Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005981_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:2:194592886:194596990:-1 gene:Zm00001d005981 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 4
Sequence

ATGCCGCGAGTCCGCCGGCGGTGCCGGGGCGCGATGCTGCTGCTCCTCGTCGCGTCGGTG
CTCGCGCCCCTCGTGCTGTACGGCGGCTCCCCCGTCTCTGTCGCGCCCCTCCCGGACTCC
ACCGTGGCGAGCGGCGCGTTCGACCCGGAGGGCGCGTCCAATCTGGTGTGGTCGCACATG
GCAGCGTCCGCGGTGTCTCTGGCCAAAGGTTTGATAACTGAAAGGCTCGGGGAGCACAAA
AACCGTGTGCTATCAGCAACTGATCACTGGCAGGTGGTTGAGGCAGGGAGCAGGAACCGT
GCATCTGGAAAATCAGGTACTGCTGGGGTCAGGGAGGACCATCACTTGCCGAATTCGGAA
GAGGAAGGTGACCTGGTTGTCGTGGAGAGTGGCAGTGCTAGGTTTGGGCAGGAGGACGTC
ATTAAGGAGGTTGTGGGAAGCCAGAGAAGGGCAGATGGATCTGGTGAGCCCGGGGATAGC
ATGGAGGTGGACGAGCAGAAGGCAAAAGAAGTTGGGATAGAGTTGCCTCACGCAACTGAT
GTGCTGCACAAAAACGGGTCAGATGGACTAGAAATGAACGATGTTTCTGGATTGCGCACT
GTTGGAATCCTGAATACATCTTCTGCGAAGGAAAGTGACGTTCATAGTTTATCCAATAAG
ATGAAACATCCTAATATTTCCAGAGAGCAGCAAACAAGGACAAGTAACAGTAATGCTGCT
CACCATGCAACAAATAGTATTACTGATCAAACCACAGCTTTGCCAGATGCTACAATTCGC
ATCATCAAGAACCAGCTTACGACAGCAAAGATGTACCTTGGATTGTTTGCTTCTAGGGGT
AATCATGGCTTCACAAGGGAGCTCCGTGCACGGATGAGGGATATACAACGAGCACTAGGC
GATGCAAGGAGTGATCGGCAATTACCTCATAATGTCCACAGCAAAACTAGAGCAATGGAG
CAGACACTGGTGAAGGTCAGGAAAATTCATGATGGCTGCTCAAGTGCTGTGAATAGGCTC
CATACTGTCCTTCACTCAACAGAGCAGCAACTCGAATCAAACAAAAGACAAGCTAACTAT
CTAGCACAAGTGGCTGCAAAATCTCTACCCAAGGGTCTCCATTGCCTTACACTGCGGCTT
ACAAATGAGTACTATTTCACTAACTCAAAGAATAAAGACTTTCCCTACGTGGAGAAGCTG
GAAGACCCCAAACTCTATCATTATGCCTTGTTTTCAGACAATGTATTGGCTGCTGCAGTG
GTTGTTAACTCAACTCTTGTCCATGCTAAGAAACCAGAAAAACATGTATTCCACATTGTG
ACAGATAGTCTTAACTATGCTGCAATGAAAATGTGGTTCCTGGCTAATCCCTTTGGTAAA
GCCGCTATTCAGGTTCAGAACATTGAAGAGTTTACATGGTTAAACTCAAGCTACAGTCCA
GTGCTGAAGCAGTTGGAAACGCGGTTTATGATTGATTACTACTTCAGAACTGGGCATGCT
AGGCACGATGAAAATCCCAAGTTTCGGAACCCCAAGTACTTGTCAATTCTCAACCATCTG
AGGTTCTATCTCCCTGAGATCTTCCCAAGACTTAACAAGGTGTTATTTCTGGATGATGAT
ACTGTAGTGCAGCGAGACCTAAGTGCGCTTTGGTTGGTAGATCTCAAAGGCAAGGTTAAT
GGTGCTGTCGAGACCTGTAGACAGGACTTCCATAGGTTTGATAAGTACCTCAACTTCTCA
AACCCTCTTATTGCCAAGAATTTTGATCCACATGCTTGTGGTTGGGCATATGGCATGAAC
ATGTTTGATTTGTCCGACTGGAGAAAGCAAAACATCACTGAGGTCTACCATACCTGGCAG
AAGTTGAATGAAAACAGGCTATTGTGGAAGCTAGGTACCCTCCCTGCTGGCCTTGTAACC
TTTTGGAACCGCACGTTCCCTCTCGATCGTTCGTGGCATCAATTAGGACTTGGGTACAAC
CCAAATGTCAACGTTAAGGATATCAGGCGAGCGGCTGTCATCCACTACAACGGAAACCTG
AAGCCCTGGCTTGAGATTGGATTGCCGAAATACCGCAAGTACTGGTCAGCACACGTCAAT
TACGATCAAGTGTTTCTACGGGAGTGCAACATAAACCCCTGA

Peptide Sequence

PEP ID

Zm00001d005981_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:2:194592886:194596990:-1 gene:Zm00001d005981 transcript:Zm00001d005981_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 4
Sequence

MPRVRRRCRGAMLLLLVASVLAPLVLYGGSPVSVAPLPDSTVASGAFDPEGASNLVWSHM
AASAVSLAKGLITERLGEHKNRVLSATDHWQVVEAGSRNRASGKSGTAGVREDHHLPNSE
EEGDLVVVESGSARFGQEDVIKEVVGSQRRADGSGEPGDSMEVDEQKAKEVGIELPHATD
VLHKNGSDGLEMNDVSGLRTVGILNTSSAKESDVHSLSNKMKHPNISREQQTRTSNSNAA
HHATNSITDQTTALPDATIRIIKNQLTTAKMYLGLFASRGNHGFTRELRARMRDIQRALG
DARSDRQLPHNVHSKTRAMEQTLVKVRKIHDGCSSAVNRLHTVLHSTEQQLESNKRQANY
LAQVAAKSLPKGLHCLTLRLTNEYYFTNSKNKDFPYVEKLEDPKLYHYALFSDNVLAAAV
VVNSTLVHAKKPEKHVFHIVTDSLNYAAMKMWFLANPFGKAAIQVQNIEEFTWLNSSYSP
VLKQLETRFMIDYYFRTGHARHDENPKFRNPKYLSILNHLRFYLPEIFPRLNKVLFLDDD
TVVQRDLSALWLVDLKGKVNGAVETCRQDFHRFDKYLNFSNPLIAKNFDPHACGWAYGMN
MFDLSDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYN
PNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP

Transcript Sequence

Transcript ID

Zm00001d005981_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:194592886:194596990:-1 gene:Zm00001d005981 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 4
Sequence

TCCGTATAGCGGCGGCAGGCCCGCTGGAGCTGGCGGCGAGGGCAATGCCGCGAGTCCGCC
GGCGGTGCCGGGGCGCGATGCTGCTGCTCCTCGTCGCGTCGGTGCTCGCGCCCCTCGTGC
TGTACGGCGGCTCCCCCGTCTCTGTCGCGCCCCTCCCGGACTCCACCGTGGCGAGCGGCG
CGTTCGACCCGGAGGGCGCGTCCAATCTGGTGTGGTCGCACATGGCAGCGTCCGCGGTGT
CTCTGGCCAAAGGTTTGATAACTGAAAGGCTCGGGGAGCACAAAAACCGTGTGCTATCAG
CAACTGATCACTGGCAGGTGGTTGAGGCAGGGAGCAGGAACCGTGCATCTGGAAAATCAG
GTACTGCTGGGGTCAGGGAGGACCATCACTTGCCGAATTCGGAAGAGGAAGGTGACCTGG
TTGTCGTGGAGAGTGGCAGTGCTAGGTTTGGGCAGGAGGACGTCATTAAGGAGGTTGTGG
GAAGCCAGAGAAGGGCAGATGGATCTGGTGAGCCCGGGGATAGCATGGAGGTGGACGAGC
AGAAGGCAAAAGAAGTTGGGATAGAGTTGCCTCACGCAACTGATGTGCTGCACAAAAACG
GGTCAGATGGACTAGAAATGAACGATGTTTCTGGATTGCGCACTGTTGGAATCCTGAATA
CATCTTCTGCGAAGGAAAGTGACGTTCATAGTTTATCCAATAAGATGAAACATCCTAATA
TTTCCAGAGAGCAGCAAACAAGGACAAGTAACAGTAATGCTGCTCACCATGCAACAAATA
GTATTACTGATCAAACCACAGCTTTGCCAGATGCTACAATTCGCATCATCAAGAACCAGC
TTACGACAGCAAAGATGTACCTTGGATTGTTTGCTTCTAGGGGTAATCATGGCTTCACAA
GGGAGCTCCGTGCACGGATGAGGGATATACAACGAGCACTAGGCGATGCAAGGAGTGATC
GGCAATTACCTCATAATGTCCACAGCAAAACTAGAGCAATGGAGCAGACACTGGTGAAGG
TCAGGAAAATTCATGATGGCTGCTCAAGTGCTGTGAATAGGCTCCATACTGTCCTTCACT
CAACAGAGCAGCAACTCGAATCAAACAAAAGACAAGCTAACTATCTAGCACAAGTGGCTG
CAAAATCTCTACCCAAGGGTCTCCATTGCCTTACACTGCGGCTTACAAATGAGTACTATT
TCACTAACTCAAAGAATAAAGACTTTCCCTACGTGGAGAAGCTGGAAGACCCCAAACTCT
ATCATTATGCCTTGTTTTCAGACAATGTATTGGCTGCTGCAGTGGTTGTTAACTCAACTC
TTGTCCATGCTAAGAAACCAGAAAAACATGTATTCCACATTGTGACAGATAGTCTTAACT
ATGCTGCAATGAAAATGTGGTTCCTGGCTAATCCCTTTGGTAAAGCCGCTATTCAGGTTC
AGAACATTGAAGAGTTTACATGGTTAAACTCAAGCTACAGTCCAGTGCTGAAGCAGTTGG
AAACGCGGTTTATGATTGATTACTACTTCAGAACTGGGCATGCTAGGCACGATGAAAATC
CCAAGTTTCGGAACCCCAAGTACTTGTCAATTCTCAACCATCTGAGGTTCTATCTCCCTG
AGATCTTCCCAAGACTTAACAAGGTGTTATTTCTGGATGATGATACTGTAGTGCAGCGAG
ACCTAAGTGCGCTTTGGTTGGTAGATCTCAAAGGCAAGGTTAATGGTGCTGTCGAGACCT
GTAGACAGGACTTCCATAGGTTTGATAAGTACCTCAACTTCTCAAACCCTCTTATTGCCA
AGAATTTTGATCCACATGCTTGTGGTTGGGCATATGGCATGAACATGTTTGATTTGTCCG
ACTGGAGAAAGCAAAACATCACTGAGGTCTACCATACCTGGCAGAAGTTGAATGAAAACA
GGCTATTGTGGAAGCTAGGTACCCTCCCTGCTGGCCTTGTAACCTTTTGGAACCGCACGT
TCCCTCTCGATCGTTCGTGGCATCAATTAGGACTTGGGTACAACCCAAATGTCAACGTTA
AGGATATCAGGCGAGCGGCTGTCATCCACTACAACGGAAACCTGAAGCCCTGGCTTGAGA
TTGGATTGCCGAAATACCGCAAGTACTGGTCAGCACACGTCAATTACGATCAAGTGTTTC
TACGGGAGTGCAACATAAACCCCTGAACAGCAAATAGTGGGTGCCAGCAGGTTGGCGGTA
GGCTTGGATCATACAAACAGTTAGTAGCCAAAG