Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d005958_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:2:193814484:193820330:-1 gene:Zm00001d005958 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:methyl binding domain117 description: methyl binding domain117
Sequence	ATGGGGACTGAGGTAGCAGCCGTAGTGGATCTCCGGGCGCTGACACAGTCGGATCTCGTG GCCCTAGCTGCCGCATCGCCCTACGCCGTCGACTCCCGCCGGGGCCGGCGCCGGCGCCGC GATAGCGAGTTCCTCTCTCCCCCGAAGATCGACCGCGCCGTTTTCAACGAGAGCGCAGGT TCCCGCAAACAAACCTTCTCCCGTCGCCGCGTCGCCACCAACATATCCCACAAACTAACG CCCACCACCACCGGGGCCTCCTCCTTATCTACGCCAGCTGCCCCCACCGAGGAGGACCCC GACAACCGCCTCATTGTGTTCTACCTCCAACGCCTCTTCGCGCGTGACGACCCCTCGTAC CCTGCTCCGCCTACGATTCCACCCCGACCGCAAACCCTAGCCGCGCCCGCGATAACAGCA CCTGCACCGCCCGCGCCGTCTCTGCCGCCGCCGTCTGCTGCGGCGGCAGACCCCGATAGG GTAGTGCTGAATCCAAAGGGTTTGGTGGTTGACCTGGTGAGACTCGCCGATCTTGTGGAT CCGTATGGGGAAGAGCTACGTCAGCGTACGGCAGGATTGGGGTCAGAGTCCGAGCTGCTG GGATTCATGAACGCGCTGGAAGGGCAATGGGGAAGCCGGAGGCGTCGGAGGAAGTTTGTG AATGCTGGCATGTTCGGTGACCACCTGCCCTGTGGGTGGAAACTGCTGCTTGGGCTCAAG CGAAAGGAGCGTGTCGCATGGATTAATTGCCGCCGTTATGTGAGCCCCAAAGGACATCAG TTTGCTACTTGCAAAGAAGTATCTTCCTACCTCTTGTCCCTTCTTGGATATCAGGAGGCA AAGCCAACTGCCTCTCAGATTAACAATGCAGGAGTGCATGACCTACATGTTAATTCTGTA GGTCTTCACCAGCAAACCATCTCAATTGAGGAAAAGCAAATTGCAGTGCCAGTTAATTCA GTTGCATTGTTTAATTCCTCTGGTGATTCTCATCAACAAAAACTTCAGAAGGATGAAGCT CCAATAGAAGTGAATGCAAAGGAGTGCCGGAAATGCAATTTGACGTTTCATGACCAGAGC GCCTATATGCAACATCAGTTGTCCTTTCACCAAAGGAAAGCTAAAAGGCGCAGGGTTAGT AAATCTGGAGAATTGGGTACCAACATAGATGGAAACTACGAGAAGACTCAGCAGAAGACC TCTGGAGAGGTATCTGGCAATTTTGGCCACAGCGCTGCAAATGTAAGGTATGAAGGTCTG AGTCCAGCAGAACTGTTAGATGGTCGACCATCCTTGATGGCAGTGCCATGTGGATCTCAG GAGATCACTATCTTGCCTCAACAGGGAAAAGAACCTTGTGTGTTGCCTCAACAGGGAAAA GAACCGTCTGTGTTGCCTCAACCGGGAAAAGAACCGTCTGTGTTGCCTCAACAGGGAAAA GAACCTTCTATGTTGCCTCAACAGGGGAAAGAACCTTCTGTGTTGCCTCAACAGGGAAAA GAACCTTCTGTGTTGCCTCAACAGGGAAAAGAACCTTCTGAGTTGCCTCAGCAGGGAAAA GAATCTTCAGGAGATATCTCTGTGAATCAGAAGGACCCTCTTAAGGAGATGAATGGCTTT CCTGAACAGGAAAAAGGACTTGTTGCTGGAGAACTTGTCTCTGCACATCATAAGGACCCT CTAATGGATATTACAGATGCATTTGAAATGATAAAAAAACATCCTGCCAGAGAGCCTTCC TCTGGGCATCATCTGGATACTGTCGACAATTCTGATGATCATAAAACCCACGATGAAGCA TGTGACAATGTTGTAACTTCTCTTTCTATTGATGCTGAAAGGAAATTGGGTGTTTGCAAC TCCATGAATGTTCATGAGAATATCAGCTTAAAAGATCCAGAACTTTCCAATGCAGATTAT TCCCAAAAGTTCAATAGGTCTGATGAAACTTGTGATGTACATAAAGAGGTTTCTTCAACT GTGAATGATCCTGATGAAAGAAAATGCACAGATGATTCAACGAGGTGTACTAATATGTCC TGTGATCTACTGCATGGCAAAATTGTCAGTTCTCCTGAAGAACATGATTTTAGTAACCAG CTAGAAAGTAACCCACTTTCAGTATCTAGGAATGAGCCTGATCTTAATTCAATTGGTACG GAAGTGGATGGTGGCAATATAACTTGCAATGCGGAAAACCCCAGAAGCTTCAAAAGTGAG AAATCTGCTGAGCTCAAGATTATGGATTGCGAAATGACTTCTTTTAAAGACAGTGAAATA AAAAATGATGTCAGAGTAAGGGATGTAAATCTCAATTCATGTTTGGATTCAATATCTTCT CCTATTTCTGGTGGAAACAATGAAACATCTGATACTCCTGATGATGCTATTCGATCATCC ATTATCGCCCAATGCTTCGGTACTACCTCTAATGATGACACGGCTTGTAAGGATGGAAAC TTTGCCAACCAGAACGACACCTGTAAGGGTGAAAATTTTGTCAACCAGAAAAATGTCACA ATGTACCAATCTAATTTGACCATGGAACCTATACCTCGAGCTCAAATAAATGTGGATTGT TTCACTTCTTCCTGTTCAATGACTCCTGAAATCAAGGACTATGGCAACAGAGGTGAAGAT CGTGCGAAAGAAGCACTAGTGAACTCACAAAACATGACAAGTAATGAAACTGGTTTTGAT GCTGAAGCTTATAACAGTGATATCTTCAATGGTACTATCACAGAAAGTAGTCTTGCCCAG TTGAGTAATGTCATTAGTATGAAAAATGCTTTTGCAAACTGTTACTCATTATCTGACCTA AACACACTTACTGGTGGTACTGCAACTGATGATATTGATATGCACAATATTAGGAGTTCT TTTGTCAGCTCTACCAGTCGCACTGAACCAAATGAGCACTGCACGTTGGATTTTGATATC AAGGGTTCCATGCTTGAGGCATTGGAAAAATCTGACAGTGACTTAGATAATCAATACAAT GATGCAGGCCCTTCTTGTGACTCACTACCTGCTACTGGGACAAGTGGGACTATTGATGAT TTTATGTCCATGCAAACCAATTTTGGTAGCTTTACTTCTTTGGTTCGTGCTGTTGAAGAT GTTCCACTGAGCAGGATTATTCAAGATCAGCGGTGTGATTTGCAACTTGGATTTGGTGGC CCCAAGCAGCAGATGTATCCAAGCTTTGAGCAACAGCTAAGGATGGCCTCGGCTGGAGCT CCGCCTTATGGGACCATCGGCAGGCATGACCCTATACCTGTACCAGAGCCAACATTGATG CTAGGTTATGCACCGCAGCTAGGTAACTGCCCCCCTCCGTTCCAGTTGGGCTGGGGTCCG TCTTATTCGAAGATGGTTGGCATGCTCCAATCTGTGTGCGTGTGGTGCAATAGCCCATTC CAGCATTTCGGCACCGTCGCTGAGCAGCAGGCAGATTCACTTGGTTACATTTGCCCGTCG TGCAAGGGAAAGTTTTCTGGTCATCTTGGCATCAACGGTCCATCTATTTGA

Peptide Sequence

PEP ID	Zm00001d005958_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:2:193814484:193820330:-1 gene:Zm00001d005958 transcript:Zm00001d005958_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:methyl binding domain117 description: methyl binding domain117
Sequence	MGTEVAAVVDLRALTQSDLVALAAASPYAVDSRRGRRRRRDSEFLSPPKIDRAVFNESAG SRKQTFSRRRVATNISHKLTPTTTGASSLSTPAAPTEEDPDNRLIVFYLQRLFARDDPSY PAPPTIPPRPQTLAAPAITAPAPPAPSLPPPSAAAADPDRVVLNPKGLVVDLVRLADLVD PYGEELRQRTAGLGSESELLGFMNALEGQWGSRRRRRKFVNAGMFGDHLPCGWKLLLGLK RKERVAWINCRRYVSPKGHQFATCKEVSSYLLSLLGYQEAKPTASQINNAGVHDLHVNSV GLHQQTISIEEKQIAVPVNSVALFNSSGDSHQQKLQKDEAPIEVNAKECRKCNLTFHDQS AYMQHQLSFHQRKAKRRRVSKSGELGTNIDGNYEKTQQKTSGEVSGNFGHSAANVRYEGL SPAELLDGRPSLMAVPCGSQEITILPQQGKEPCVLPQQGKEPSVLPQPGKEPSVLPQQGK EPSMLPQQGKEPSVLPQQGKEPSVLPQQGKEPSELPQQGKESSGDISVNQKDPLKEMNGF PEQEKGLVAGELVSAHHKDPLMDITDAFEMIKKHPAREPSSGHHLDTVDNSDDHKTHDEA CDNVVTSLSIDAERKLGVCNSMNVHENISLKDPELSNADYSQKFNRSDETCDVHKEVSST VNDPDERKCTDDSTRCTNMSCDLLHGKIVSSPEEHDFSNQLESNPLSVSRNEPDLNSIGT EVDGGNITCNAENPRSFKSEKSAELKIMDCEMTSFKDSEIKNDVRVRDVNLNSCLDSISS PISGGNNETSDTPDDAIRSSIIAQCFGTTSNDDTACKDGNFANQNDTCKGENFVNQKNVT MYQSNLTMEPIPRAQINVDCFTSSCSMTPEIKDYGNRGEDRAKEALVNSQNMTSNETGFD AEAYNSDIFNGTITESSLAQLSNVISMKNAFANCYSLSDLNTLTGGTATDDIDMHNIRSS FVSSTSRTEPNEHCTLDFDIKGSMLEALEKSDSDLDNQYNDAGPSCDSLPATGTSGTIDD FMSMQTNFGSFTSLVRAVEDVPLSRIIQDQRCDLQLGFGGPKQQMYPSFEQQLRMASAGA PPYGTIGRHDPIPVPEPTLMLGYAPQLGNCPPPFQLGWGPSYSKMVGMLQSVCVWCNSPF QHFGTVAEQQADSLGYICPSCKGKFSGHLGINGPSI

Transcript Sequence

Transcript ID	Zm00001d005958_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:193814484:193820330:-1 gene:Zm00001d005958 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:methyl binding domain117 description: methyl binding domain117
Sequence	GTTCGATTACGGGGCCCGCCGCGCCACTCGACATCTCAACCCACACTGGCCCACTCCTGT CTTGAACATCTCCCGTCCCCATCGTCCTCGTCGCATCCAGCACTCTGCACTCATGCGTTT CCTCCCCTCCTAAGCCAAACCCCGAATCCTCCGTCGCCCAGCAGCCGCCGGTGACGGCGA CGCTGGGCAATGGGGACTGAGGTAGCAGCCGTAGTGGATCTCCGGGCGCTGACACAGTCG GATCTCGTGGCCCTAGCTGCCGCATCGCCCTACGCCGTCGACTCCCGCCGGGGCCGGCGC CGGCGCCGCGATAGCGAGTTCCTCTCTCCCCCGAAGATCGACCGCGCCGTTTTCAACGAG AGCGCAGGTTCCCGCAAACAAACCTTCTCCCGTCGCCGCGTCGCCACCAACATATCCCAC AAACTAACGCCCACCACCACCGGGGCCTCCTCCTTATCTACGCCAGCTGCCCCCACCGAG GAGGACCCCGACAACCGCCTCATTGTGTTCTACCTCCAACGCCTCTTCGCGCGTGACGAC CCCTCGTACCCTGCTCCGCCTACGATTCCACCCCGACCGCAAACCCTAGCCGCGCCCGCG ATAACAGCACCTGCACCGCCCGCGCCGTCTCTGCCGCCGCCGTCTGCTGCGGCGGCAGAC CCCGATAGGGTAGTGCTGAATCCAAAGGGTTTGGTGGTTGACCTGGTGAGACTCGCCGAT CTTGTGGATCCGTATGGGGAAGAGCTACGTCAGCGTACGGCAGGATTGGGGTCAGAGTCC GAGCTGCTGGGATTCATGAACGCGCTGGAAGGGCAATGGGGAAGCCGGAGGCGTCGGAGG AAGTTTGTGAATGCTGGCATGTTCGGTGACCACCTGCCCTGTGGGTGGAAACTGCTGCTT GGGCTCAAGCGAAAGGAGCGTGTCGCATGGATTAATTGCCGCCGTTATGTGAGCCCCAAA GGACATCAGTTTGCTACTTGCAAAGAAGTATCTTCCTACCTCTTGTCCCTTCTTGGATAT CAGGAGGCAAAGCCAACTGCCTCTCAGATTAACAATGCAGGAGTGCATGACCTACATGTT AATTCTGTAGGTCTTCACCAGCAAACCATCTCAATTGAGGAAAAGCAAATTGCAGTGCCA GTTAATTCAGTTGCATTGTTTAATTCCTCTGGTGATTCTCATCAACAAAAACTTCAGAAG GATGAAGCTCCAATAGAAGTGAATGCAAAGGAGTGCCGGAAATGCAATTTGACGTTTCAT GACCAGAGCGCCTATATGCAACATCAGTTGTCCTTTCACCAAAGGAAAGCTAAAAGGCGC AGGGTTAGTAAATCTGGAGAATTGGGTACCAACATAGATGGAAACTACGAGAAGACTCAG CAGAAGACCTCTGGAGAGGTATCTGGCAATTTTGGCCACAGCGCTGCAAATGTAAGGTAT GAAGGTCTGAGTCCAGCAGAACTGTTAGATGGTCGACCATCCTTGATGGCAGTGCCATGT GGATCTCAGGAGATCACTATCTTGCCTCAACAGGGAAAAGAACCTTGTGTGTTGCCTCAA CAGGGAAAAGAACCGTCTGTGTTGCCTCAACCGGGAAAAGAACCGTCTGTGTTGCCTCAA CAGGGAAAAGAACCTTCTATGTTGCCTCAACAGGGGAAAGAACCTTCTGTGTTGCCTCAA CAGGGAAAAGAACCTTCTGTGTTGCCTCAACAGGGAAAAGAACCTTCTGAGTTGCCTCAG CAGGGAAAAGAATCTTCAGGAGATATCTCTGTGAATCAGAAGGACCCTCTTAAGGAGATG AATGGCTTTCCTGAACAGGAAAAAGGACTTGTTGCTGGAGAACTTGTCTCTGCACATCAT AAGGACCCTCTAATGGATATTACAGATGCATTTGAAATGATAAAAAAACATCCTGCCAGA GAGCCTTCCTCTGGGCATCATCTGGATACTGTCGACAATTCTGATGATCATAAAACCCAC GATGAAGCATGTGACAATGTTGTAACTTCTCTTTCTATTGATGCTGAAAGGAAATTGGGT GTTTGCAACTCCATGAATGTTCATGAGAATATCAGCTTAAAAGATCCAGAACTTTCCAAT GCAGATTATTCCCAAAAGTTCAATAGGTCTGATGAAACTTGTGATGTACATAAAGAGGTT TCTTCAACTGTGAATGATCCTGATGAAAGAAAATGCACAGATGATTCAACGAGGTGTACT AATATGTCCTGTGATCTACTGCATGGCAAAATTGTCAGTTCTCCTGAAGAACATGATTTT AGTAACCAGCTAGAAAGTAACCCACTTTCAGTATCTAGGAATGAGCCTGATCTTAATTCA ATTGGTACGGAAGTGGATGGTGGCAATATAACTTGCAATGCGGAAAACCCCAGAAGCTTC AAAAGTGAGAAATCTGCTGAGCTCAAGATTATGGATTGCGAAATGACTTCTTTTAAAGAC AGTGAAATAAAAAATGATGTCAGAGTAAGGGATGTAAATCTCAATTCATGTTTGGATTCA ATATCTTCTCCTATTTCTGGTGGAAACAATGAAACATCTGATACTCCTGATGATGCTATT CGATCATCCATTATCGCCCAATGCTTCGGTACTACCTCTAATGATGACACGGCTTGTAAG GATGGAAACTTTGCCAACCAGAACGACACCTGTAAGGGTGAAAATTTTGTCAACCAGAAA AATGTCACAATGTACCAATCTAATTTGACCATGGAACCTATACCTCGAGCTCAAATAAAT GTGGATTGTTTCACTTCTTCCTGTTCAATGACTCCTGAAATCAAGGACTATGGCAACAGA GGTGAAGATCGTGCGAAAGAAGCACTAGTGAACTCACAAAACATGACAAGTAATGAAACT GGTTTTGATGCTGAAGCTTATAACAGTGATATCTTCAATGGTACTATCACAGAAAGTAGT CTTGCCCAGTTGAGTAATGTCATTAGTATGAAAAATGCTTTTGCAAACTGTTACTCATTA TCTGACCTAAACACACTTACTGGTGGTACTGCAACTGATGATATTGATATGCACAATATT AGGAGTTCTTTTGTCAGCTCTACCAGTCGCACTGAACCAAATGAGCACTGCACGTTGGAT TTTGATATCAAGGGTTCCATGCTTGAGGCATTGGAAAAATCTGACAGTGACTTAGATAAT CAATACAATGATGCAGGCCCTTCTTGTGACTCACTACCTGCTACTGGGACAAGTGGGACT ATTGATGATTTTATGTCCATGCAAACCAATTTTGGTAGCTTTACTTCTTTGGTTCGTGCT GTTGAAGATGTTCCACTGAGCAGGATTATTCAAGATCAGCGGTGTGATTTGCAACTTGGA TTTGGTGGCCCCAAGCAGCAGATGTATCCAAGCTTTGAGCAACAGCTAAGGATGGCCTCG GCTGGAGCTCCGCCTTATGGGACCATCGGCAGGCATGACCCTATACCTGTACCAGAGCCA ACATTGATGCTAGGTTATGCACCGCAGCTAGGTAACTGCCCCCCTCCGTTCCAGTTGGGC TGGGGTCCGTCTTATTCGAAGATGGTTGGCATGCTCCAATCTGTGTGCGTGTGGTGCAAT AGCCCATTCCAGCATTTCGGCACCGTCGCTGAGCAGCAGGCAGATTCACTTGGTTACATT TGCCCGTCGTGCAAGGGAAAGTTTTCTGGTCATCTTGGCATCAACGGTCCATCTATTTGA AATCAGTTTCTTGTAACCTGAACTGGTGCTGCTGCCCCACCATCAATTTATAGTCTAGTT GATATGAATCGTTTTGTACTTGTAGTATGTATCCTTTAACTCGTGGCTAGTGGTGGAAAC AGGTTTATTCGAATCTTACATTTTTGGTTATTAAAACTCAACCATCAAGCAGTTGTTGCG AACAAGGAAGCTAAGTTGTTGGATACATACAAGACTGTGCTCTCAAGAGATACTGGTGGG TACTCTGCTGAAGAAAAGACCAATTGGCCTGAAGACTAAATTGTCCATCTTCAATTGCAC CAAGAGAAAGGATCTCCATTGCACTGGTGGCTGGTGCATGTTTGAGGCTTGGATGATGGC AGAAGTGTCATGTTTTTTTATGTTGAACCTTGTTTCTAAATAGTAAGTCTAGACAATTGT TCTGTTTGAAATCTGAATGAATTGTGGCTGGTTGTTGGTGGACTGGATTACAGGCAAAAG TGTCATGTTTTTTCTATCTTTAACCTTGTGTATAATATAGTAAAGGACGGATGATTGCTC TATTTGAAATATGGAGTAATGGTTGCTAGTTGCCT