Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005933_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:193264829:193267543:-1 gene:Zm00001d005933 gene_biotype:protein_coding transcript_biotype:protein_coding description:PUP1

Sequence

ATGGTCGTGGGCTCAGCGGGCGGCCCGCTGTTCCTCCGCGCCTACTTCCTCCACGGCGGC
GCCCGCAAGTGGCTCTCGGCCTTGCTCCAGACCGCCGGCTTCCCGCTCCTGCTCGTGCCG
CTCTGCGTCTCCTTCTCCCGGCGCCGCCGCCGGCGCGACGACGGCGCGCCGGCGAAGGCG
CCGTTCTTCCTCATGACGCCCCGCCTCCTGGCGGCGTCCGCGGCCATCGGCCTCATGACC
GGCCTCGACGACCTCCTCTACGCCTACGGCCTGGCCTACCTGCCGGTGTCCACGTCCTCC
ATCCTCATCTCCACGCAGCTGGCCTTCACGGCCGCCTTCGCGCTGCTGCTCGTGCGGCAG
CGGTTCACGGCCTTCTCGGTGAACGCCGTGGCGCTGCTCAGCGCCGGCGCCGCCATGCTC
GGGATGAACGCCGGCGGGGACCGCCCCGCGGGCGTGTCGCCGGCGCAGTACGGCGCCGGC
TTCGCCATGACGCTCGGCGCCGCCGCGCTCTACGGCCTCCTGCTCCCCGCCATGGAGCTC
AGCCAGGCCCAGGCGCGCGCCGGTACTGCCGCGGCTGTCACCTACACGCTCGTCATCGAG
ATGCAGCTCGTCATCGGCCTCACCGCCACCGTCTTCAGCGCCGTCGGCATGCTCGCCAAC
CATGATTTGCACGCAATCCCCGGAGAGGCGCGGGAGTTCGATCTCGGCCGGTCAGGCTAC
TACCTACTGCTGGCCGGGTCAGCCGCCACGTACCAGTGCTTCTTCCTCGGCACCATCGGC
GCCGTCTTCTTTGGCTCGGCGCTGCTCGCCGGAGTGGTCATGACCGTGCTTATCCCGGTC
ACTGAGGTGCTCGCCGTCGTGTTCTTCCACGAGCCGTTCAACGGCACCAAGGGCGTCGCC
CTCGCGCTCTCGCTCTGGGGCTTCGTCTCCTACTTCTACGGGGAGGTTCAAACATCCAAG
GCGCACCACCACCTGCCTGACAAGCCAACAAATGTCGAGCGTTTGGACCCATAG

Peptide Sequence

PEP ID

Zm00001d005933_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:193264829:193267543:-1 gene:Zm00001d005933 transcript:Zm00001d005933_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:PUP1

Sequence

MVVGSAGGPLFLRAYFLHGGARKWLSALLQTAGFPLLLVPLCVSFSRRRRRRDDGAPAKA
PFFLMTPRLLAASAAIGLMTGLDDLLYAYGLAYLPVSTSSILISTQLAFTAAFALLLVRQ
RFTAFSVNAVALLSAGAAMLGMNAGGDRPAGVSPAQYGAGFAMTLGAAALYGLLLPAMEL
SQAQARAGTAAAVTYTLVIEMQLVIGLTATVFSAVGMLANHDLHAIPGEAREFDLGRSGY
YLLLAGSAATYQCFFLGTIGAVFFGSALLAGVVMTVLIPVTEVLAVVFFHEPFNGTKGVA
LALSLWGFVSYFYGEVQTSKAHHHLPDKPTNVERLDP

Transcript Sequence

Transcript ID

Zm00001d005933_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:193264829:193267543:-1 gene:Zm00001d005933 gene_biotype:protein_coding transcript_biotype:protein_coding description:PUP1

Sequence

GAAACACCGGCGCAGGCGCAGGCGCAGGGCACCACTCATGTCGCCGGCACTACGACTACG
AGGACACTCCGCAACCCGCTCCTCGTCGTCAACTTCGTCCTCATGGTCGTGGGCTCAGCG
GGCGGCCCGCTGTTCCTCCGCGCCTACTTCCTCCACGGCGGCGCCCGCAAGTGGCTCTCG
GCCTTGCTCCAGACCGCCGGCTTCCCGCTCCTGCTCGTGCCGCTCTGCGTCTCCTTCTCC
CGGCGCCGCCGCCGGCGCGACGACGGCGCGCCGGCGAAGGCGCCGTTCTTCCTCATGACG
CCCCGCCTCCTGGCGGCGTCCGCGGCCATCGGCCTCATGACCGGCCTCGACGACCTCCTC
TACGCCTACGGCCTGGCCTACCTGCCGGTGTCCACGTCCTCCATCCTCATCTCCACGCAG
CTGGCCTTCACGGCCGCCTTCGCGCTGCTGCTCGTGCGGCAGCGGTTCACGGCCTTCTCG
GTGAACGCCGTGGCGCTGCTCAGCGCCGGCGCCGCCATGCTCGGGATGAACGCCGGCGGG
GACCGCCCCGCGGGCGTGTCGCCGGCGCAGTACGGCGCCGGCTTCGCCATGACGCTCGGC
GCCGCCGCGCTCTACGGCCTCCTGCTCCCCGCCATGGAGCTCAGCCAGGCCCAGGCGCGC
GCCGGTACTGCCGCGGCTGTCACCTACACGCTCGTCATCGAGATGCAGCTCGTCATCGGC
CTCACCGCCACCGTCTTCAGCGCCGTCGGCATGCTCGCCAACCATGATTTGCACGCAATC
CCCGGAGAGGCGCGGGAGTTCGATCTCGGCCGGTCAGGCTACTACCTACTGCTGGCCGGG
TCAGCCGCCACGTACCAGTGCTTCTTCCTCGGCACCATCGGCGCCGTCTTCTTTGGCTCG
GCGCTGCTCGCCGGAGTGGTCATGACCGTGCTTATCCCGGTCACTGAGGTGCTCGCCGTC
GTGTTCTTCCACGAGCCGTTCAACGGCACCAAGGGCGTCGCCCTCGCGCTCTCGCTCTGG
GGCTTCGTCTCCTACTTCTACGGGGAGGTTCAAACATCCAAGGCGCACCACCACCTGCCT
GACAAGCCAACAAATGTCGAGCGTTTGGACCCATAGATGATGGTGATATGGCGTTCCCGG
GAGTAAGTTTTCACCCCGTATTTGAGGAATAAGCAAGCCATATCAAATCATATTATACAA
CAATCTATATAGGGGAGTATGAATTTTCTTGTACAGTCTAATGTCTCCCATGCATGGACC
TATAGAGCATACTATGTATATATGTTGGTGTATATGTACTTAAACAAACTTGACCATGCA
AAGGTAAGATTAATCCTAGCCATTGCATCAAAA