Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005792_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:188843013:188845481:-1 gene:Zm00001d005792 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amidase1 description: amidase1
Sequence

ATGTCATCGTCGGCGTTCGGCGACTTCGGTCCGCTCACCGAGCGCCGCCGCGCTGAGAAG
GCGCGGCAGCAGCGCAGGCGCATCATGATCGCCGTCGGGACTGTCTCCATAATCGCCATA
CTCATCGTCATTGGCTGGTACGCGGTCATGTACAGCGGGAAGAAGTCGTCCAGCGACGGT
GACCACAACCACAAGTCTTCGTCGTCGCCGGCCAAAGGCAAGTCCAGCGGCGGATCGGAC
TCGGAATCGGAAGCGGAAACGGAAACGGAAACGGAATCGGGGTCGGATTCGAAGACGGAT
CTGAAGGCTGTGTCCAAGAGCATCAAGGCGATGTGCTCGCAGACAGACTACACGGACGCG
TGCGAGAAGAGCCTCGGCAAGGCCGCGAACGCCAGCTCGTCGTCGCCCAAGGACATCATC
CGCAGCGCCGTGGAGGTGATCGGCGACGCGATCGGCCAGGCGTTCGACCGCGCGGACCTG
ATCCTGAGCAACGACCCGCTCGTGAAGGGCGCCGTCGCCGACTGCAAGGAGGTGTTCGCG
GACGCCAAGGACGACCTCAACAGCACGCTCATGGGCGTCGACGACAAGGACGGCATCGCC
AAGCAGGGCTACCAGCTGCGCATCTGGCTCAGCGCCGTGATCGCGAACATGGAGACGTGC
ATCGACGGGTTCCCCGATGAAGAGTTCAAGACCAAGGTGAAGGAGTCGTTCACCGAGGGG
AAGGAGCTCACCAGCAACGCCCTGGCGCTCATCGAGAAGGGGTCGTCGCTCCTCTCCGCA
CTCAAGGGCGTCTCAAAACGGCGTTTGCTGGAGGAGGAGCAAGGCGCGGCGGCGGCGGCG
TCGCAAGCCGGGCCGGCACTCGACAAGGACGGCATCCCGGAGTGGGTACCCGACGGTGAG
CGGAGGGTGCTCAAGGGCGGCGGCTTCAAGAACACACTCACGCCAAACGTGGTGGTGGCG
AAGGACGGCAGCGGCAAGTTCAAGACCATCAACGAGGCGCTCTCCGCCATGCCGAAGACC
TACGACGGAAGATACGTGATCCAAGTGAAGGAAGGGGTGTACGAGGAGTACGTGACCATC
ACCAAGACTATGAAGAACGTGACCCTCTTAGGTGACGGCTCCAAGAAGTCCATCGTCACC
GGCAAGAAGAGCTTCGCCGACGGGATCACGACTTTCAAGACAGCAACCTTCATGCGTAGC
TGCGCAAGGCGACGGGTTCATGGCAATCGGGATGGGGTTCCAGAACACGGCCGGCGCGGA
GAAGCACCAGGCGGTTGCGCTGCTGGTGCAGTCGGACAAGTCCATCTTCCTCAACTGCAA
GATGGACGGGTTCCAGGACACGCTGTACGCGCACTCCAAGGCGCAGTTCTACCGCAACTG
CATCATCTCCGGCACGGTGGACTTCATCTTCGGCGACGCGGCGGCGGTGTTCCAGAACTG
CATCCTGGTGCTGCGGCGGCCCATGGACAACCAGCAGAACATCGTGACGGCGCAGGGCCG
CGCGGACGCGCGCGAGGCCACGGGGTTCGTTCTCCAGAAGTGCGAATTCCAGGCCGAGGC
CGCGCTCCGGGACGCCAAGCGCCCGGCCATCCGCAACTACCTGGGCCGGCCCTGGCGCGA
GTGCTCGCGCACCGTCGTCATGGAGTCGGAGCTCCCGGACTTCATCGACAAGGCCGGGTA
CCTGCCCTGGAACGGCGACTTCGGGCTCAAGACGCTGTGGTACGCCGAGTTCGGCAACAC
CGGGCCCGGCGCCAGCACGGCGGGGCGCGTCAGCTGGCCGGGCTTCAAGAAGGTGATCAG
CAAGGCGGACGCGACCAAGTTCACGGTCGAGAACTTCCTGCACGCTCAGCCCTGGATCGA
TCCCACAGGCACGCCGGTGAAGTACGATCTGTTCACATGAGCGCCCGGGGATCGGACCGG
ATGATGCATCTTAGCTTGTTCACGATGTGGGGGATCGGAGGAGGCTGGCGCGGTGGCACT
ACGATTGTTGGGTGTCGGAGTCGGAGGCAAGGCGACCGAGAGCACTGCATACAAGAGTGG
AAAACGATACTGTCCAGTTTTAATTCGCGTTGGTATGTATACTGGCTGCTATGTGAGTTT
TGTACCTGTACATTTATACTACGACTAAGTCTCAGTATAGCG

Peptide Sequence

PEP ID

Zm00001d005792_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:188843013:188845481:-1 gene:Zm00001d005792 transcript:Zm00001d005792_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amidase1 description: amidase1
Sequence

MSSSAFGDFGPLTERRRAEKARQQRRRIMIAVGTVSIIAILIVIGWYAVMYSGKKSSSDG
DHNHKSSSSPAKGKSSGGSDSESEAETETETESGSDSKTDLKAVSKSIKAMCSQTDYTDA
CEKSLGKAANASSSSPKDIIRSAVEVIGDAIGQAFDRADLILSNDPLVKGAVADCKEVFA
DAKDDLNSTLMGVDDKDGIAKQGYQLRIWLSAVIANMETCIDGFPDEEFKTKVKESFTEG
KELTSNALALIEKGSSLLSALKGVSKRRLLEEEQGAAAAASQAGPALDKDGIPEWVPDGE
RRVLKGGGFKNTLTPNVVVAKDGSGKFKTINEALSAMPKTYDGRYVIQVKEGVYEEYVTI
TKTMKNVTLLGDGSKKSIVTGKKSFADGITTFKTATFMRSCARRRVHGNRDGVPEHGRRG
EAPGGCAAGAVGQVHLPQLQDGRVPGHAVRALQGAVLPQLHHLRHGGLHLRRRGGGVPEL
HPGAAAAHGQPAEHRDGAGPRGRARGHGVRSPEVRIPGRGRAPGRQAPGHPQLPGPALAR
VLAHRRHGVGAPGLHRQGRVPALERRLRAQDAVVRRVRQHRARRQHGGARQLAGLQEGDQ
QGGRDQVHGRELPARSALDRSHRHAGEVRSVHMSARGSDRMMHLSLFTMWGIGGGWRGGT
TIVGCRSRRQGDREHCIQEWKTILSSFNSRWYVYWLLCEFCTCTFILRLSLSIA

Transcript Sequence

Transcript ID

Zm00001d005792_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:188843013:188845481:-1 gene:Zm00001d005792 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amidase1 description: amidase1
Sequence

GCTCCATCCTCTCTGCCTTGGGTGATGGAAGGCAGAGGGCGACGGCCAGGAGGAAGCGGT
CAATAGAAGACAAAATTTTACCCTAAAAAAGACTAGAAAAAACATCTCCGACTATGTCAT
CGTCGGCGTTCGGCGACTTCGGTCCGCTCACCGAGCGCCGCCGCGCTGAGAAGGCGCGGC
AGCAGCGCAGGCGCATCATGATCGCCGTCGGGACTGTCTCCATAATCGCCATACTCATCG
TCATTGGCTGGTACGCGGTCATGTACAGCGGGAAGAAGTCGTCCAGCGACGGTGACCACA
ACCACAAGTCTTCGTCGTCGCCGGCCAAAGGCAAGTCCAGCGGCGGATCGGACTCGGAAT
CGGAAGCGGAAACGGAAACGGAAACGGAATCGGGGTCGGATTCGAAGACGGATCTGAAGG
CTGTGTCCAAGAGCATCAAGGCGATGTGCTCGCAGACAGACTACACGGACGCGTGCGAGA
AGAGCCTCGGCAAGGCCGCGAACGCCAGCTCGTCGTCGCCCAAGGACATCATCCGCAGCG
CCGTGGAGGTGATCGGCGACGCGATCGGCCAGGCGTTCGACCGCGCGGACCTGATCCTGA
GCAACGACCCGCTCGTGAAGGGCGCCGTCGCCGACTGCAAGGAGGTGTTCGCGGACGCCA
AGGACGACCTCAACAGCACGCTCATGGGCGTCGACGACAAGGACGGCATCGCCAAGCAGG
GCTACCAGCTGCGCATCTGGCTCAGCGCCGTGATCGCGAACATGGAGACGTGCATCGACG
GGTTCCCCGATGAAGAGTTCAAGACCAAGGTGAAGGAGTCGTTCACCGAGGGGAAGGAGC
TCACCAGCAACGCCCTGGCGCTCATCGAGAAGGGGTCGTCGCTCCTCTCCGCACTCAAGG
GCGTCTCAAAACGGCGTTTGCTGGAGGAGGAGCAAGGCGCGGCGGCGGCGGCGTCGCAAG
CCGGGCCGGCACTCGACAAGGACGGCATCCCGGAGTGGGTACCCGACGGTGAGCGGAGGG
TGCTCAAGGGCGGCGGCTTCAAGAACACACTCACGCCAAACGTGGTGGTGGCGAAGGACG
GCAGCGGCAAGTTCAAGACCATCAACGAGGCGCTCTCCGCCATGCCGAAGACCTACGACG
GAAGATACGTGATCCAAGTGAAGGAAGGGGTGTACGAGGAGTACGTGACCATCACCAAGA
CTATGAAGAACGTGACCCTCTTAGGTGACGGCTCCAAGAAGTCCATCGTCACCGGCAAGA
AGAGCTTCGCCGACGGGATCACGACTTTCAAGACAGCAACCTTCATGCGTAGCTGCGCAA
GGCGACGGGTTCATGGCAATCGGGATGGGGTTCCAGAACACGGCCGGCGCGGAGAAGCAC
CAGGCGGTTGCGCTGCTGGTGCAGTCGGACAAGTCCATCTTCCTCAACTGCAAGATGGAC
GGGTTCCAGGACACGCTGTACGCGCACTCCAAGGCGCAGTTCTACCGCAACTGCATCATC
TCCGGCACGGTGGACTTCATCTTCGGCGACGCGGCGGCGGTGTTCCAGAACTGCATCCTG
GTGCTGCGGCGGCCCATGGACAACCAGCAGAACATCGTGACGGCGCAGGGCCGCGCGGAC
GCGCGCGAGGCCACGGGGTTCGTTCTCCAGAAGTGCGAATTCCAGGCCGAGGCCGCGCTC
CGGGACGCCAAGCGCCCGGCCATCCGCAACTACCTGGGCCGGCCCTGGCGCGAGTGCTCG
CGCACCGTCGTCATGGAGTCGGAGCTCCCGGACTTCATCGACAAGGCCGGGTACCTGCCC
TGGAACGGCGACTTCGGGCTCAAGACGCTGTGGTACGCCGAGTTCGGCAACACCGGGCCC
GGCGCCAGCACGGCGGGGCGCGTCAGCTGGCCGGGCTTCAAGAAGGTGATCAGCAAGGCG
GACGCGACCAAGTTCACGGTCGAGAACTTCCTGCACGCTCAGCCCTGGATCGATCCCACA
GGCACGCCGGTGAAGTACGATCTGTTCACATGAGCGCCCGGGGATCGGACCGGATGATGC
ATCTTAGCTTGTTCACGATGTGGGGGATCGGAGGAGGCTGGCGCGGTGGCACTACGATTG
TTGGGTGTCGGAGTCGGAGGCAAGGCGACCGAGAGCACTGCATACAAGAGTGGAAAACGA
TACTGTCCAGTTTTAATTCGCGTTGGTATGTATACTGGCTGCTATGTGAGTTTTGTACCT
GTACATTTATACTACGACTAAGTCTCAGTATAGCGG