Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005547_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:2:178261462:178270758:1 gene:Zm00001d005547 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein PHR1-LIKE 3
Sequence

ATGTTCCCGCCTGGCCTGATCCACCACCGCCCTGACGCCCCCGTTCCCGGCGATGGGGCG
ACACGCTCCGGCCCCGGCGGGCCGAGCCTTGTACTGACGGCGGACCCCAAGCCCAGGCTG
CGGTGGACGGCCGACCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCC
GAGACATCCTATCTTCTAGATGCTCAAAGTGGAATGAGCGTGTCCCCTAGAGTTCCTGCC
CAGGATATGAAAGAAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTCCAA
AGAAGACTGCATGAACAAGTGGAGGTCCAAAAGCGCGTGCAGATCAGAATGGAAGCGTTT
CAGAAGTACATCGACAGTATCCTGGAGAGCGCGTGCAAGATGGTCACCGAACAGTTCGCT
TCAAGTGGCTTCAGCATCTCTGACCCTGATCTCCCGGAGATATCCCCTGGAGGGGTGGTC
ATGTGTGGCGGCCCCACGGACACGTTGAGCTCGTCGGTGTTCAACCAGCTTTCCGTCAGC
TCCATCGGCTCGCACAGTCCAGGAGGCAAACCTTCCCCTTCCCCATCAGGCATGGAATGT
CCGCCGCTGCTCCTCCACAAGTCGCATGAGCTCAAGCGGAGGTCCTCTTGA

Peptide Sequence

PEP ID

Zm00001d005547_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:2:178261462:178270758:1 gene:Zm00001d005547 transcript:Zm00001d005547_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein PHR1-LIKE 3
Sequence

MFPPGLIHHRPDAPVPGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGP
ETSYLLDAQSGMSVSPRVPAQDMKESQEVKEALRAQMEVQRRLHEQVEVQKRVQIRMEAF
QKYIDSILESACKMVTEQFASSGFSISDPDLPEISPGGVVMCGGPTDTLSSSVFNQLSVS
SIGSHSPGGKPSPSPSGMECPPLLLHKSHELKRRSS

Transcript Sequence

Transcript ID

Zm00001d005547_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:178261462:178270758:1 gene:Zm00001d005547 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein PHR1-LIKE 3
Sequence

GAAAAGGACATCGCTCTGCACTAACAAATATCATTACCGCCAATAACGTAATGCGAGTCT
TGCAGCTTCAGCCACCAAGAGACCAGGGCTGAACTGCTGAAGCTGAGATAGGATTGAGAA
TCGCTGCCAGTGGAAAGCGGCACTAGCAGCAGGGCAGAAGCAAGAACCAGCAAGAAAGGG
GAGAGAGAAAGCGGAAGGACTTTTTCTCGGATTGGATCCTTCGCTTTTGGGGGAAGGAGA
AGGCCCCTCTCTGGCGCTAGCAGGAGCAGCGGAAGGAGGAAGAGATGTTCCCGCCTGGCC
TGATCCACCACCGCCCTGACGCCCCCGTTCCCGGCGATGGGGCGACACGCTCCGGCCCCG
GCGGGCCGAGCCTTGTACTGACGGCGGACCCCAAGCCCAGGCTGCGGTGGACGGCCGACC
TCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGACATCCTATCTTC
TAGATGCTCAAAGTGGAATGAGCGTGTCCCCTAGAGTTCCTGCCCAGGATATGAAAGAAA
GCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTCCAAAGAAGACTGCATGAAC
AAGTGGAGGTCCAAAAGCGCGTGCAGATCAGAATGGAAGCGTTTCAGAAGTACATCGACA
GTATCCTGGAGAGCGCGTGCAAGATGGTCACCGAACAGTTCGCTTCAAGTGGCTTCAGCA
TCTCTGACCCTGATCTCCCGGAGATATCCCCTGGAGGGGTGGTCATGTGTGGCGGCCCCA
CGGACACGTTGAGCTCGTCGGTGTTCAACCAGCTTTCCGTCAGCTCCATCGGCTCGCACA
GTCCAGGAGGCAAACCTTCCCCTTCCCCATCAGGCATGGAATGTCCGCCGCTGCTCCTCC
ACAAGTCGCATGAGCTCAAGCGGAGGTCCTCTTGAACTGACAAATCGGCGAAGCCTGAGG
GCGCGGTGATGGCTGTCTTTGCTAGTGTTGTCGGATATGGTGGTACTGGTGGTGACAAGG
GAAATTGGTGGTCCAGTCTTGTGGTAGCTGACTTTCTCCAGGTAGCAAGATATTGCTGTG
TTTGTTTGATCAGTCAAAGCATCAAACAGACAGACCTACGTTCATGTGAACTGCCTCATG
CATGTGCTAGATTGAAAAAAAAAGTTATCATATTTTGTCATGAGATTATGATTCTACTAG
CTAGCATCCTTAGCACACTTGAGATGTTGTTGACTCGTGTCCTAGTGTCCTCTGTGTTGA
TCCATGTATGCACAGCGATTCATGTTGGGAGTTGGGACTGGGACATGTTAACACCAGATG
TTTCAAGCTTCGTACTTTGCCTCAGTTGTCCATGCATGCAGCAGGCATCCCAGTACTTCA
CCTGCTGTTGAACTTGAAGACTAGTGTATTCAGCTTATGAAAGATTCATGCTGAGTTTGT
ACCCCCACAAA