Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005502_T015
CDS Infomation

cds chromosome:B73_RefGen_v4:2:176557056:176561166:1 gene:Zm00001d005502 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SMG7
Sequence

ATGGAGGAAAAGCATGCAAATGCCAGGTCTTTCTTCTGGAGCCAATGCATCTCATTTATG
AATAAGTTGATCCTTACCAACCTTGCATCTGTGAATGATGATGATGACGAGGCTTGCTTT
TCTAATATGAGCATTTATGAGGAGGGTGAAACTGGCAACAGGTTTGCCCTTTGGGAAGAT
CTTGAATTGAGAGGTTTTCTGCCCTTGCTTCCTGCACATACCATTTTGGATTTCTCAAGC
AAACACACATTTGGAAGCACCAAGGAGAAGAAAGCACGGGTTCAGCGAATTTTTGCTGCA
GGAAAGTCACTGCTTAACTTTGTTCAGATTGATCAGTTGAGAATTTATTTTGATTCATCA
TCGAAGAAGTTTGTTATGGCCAAGAACCCTCCTGTTTCTAAAACTAACACCCCTCTTCAC
GAATCTCCTGATGCACTTAAAACAAGTGGCACTGAAATGGATTATGAGGCTGCTAGAAGA
TTTGATTCAGTTTCTTCTAATATGGGCACACTGCAGTCTAAAGTGCAGTTTTGTCCTGAT
GGTGACGATGATGAAGAAATTGTTTTCAAGCCAACAGCTTCCGAAAAGTTTCCGAAAGCT
CCTTCAGATCTGTTGGTTAATGGATACACTCATCCTGTACCTATGTCTACTGCTGGCTGG
CCAACCAATGCTAGTTTAGTGCCTGTTCAGAGCACTGGATCAATGACTGCAACTGGTTGG
CCACCCAATGGTGGGTCAAATGCTTTTCCAAGTACTGCATCTCTATCAGCTGCTGGTAAT
TACAACATTAACCAGTCGCTTCCCAGGTCTTCCGTTGGTTGGGCTGTCAATGGTGAGCAA
AGTGTTATTCCTAGCATTGCTCCAAGATTTGAACTCGTGCAGCCTGTTGAAGAGCCTGTT
TCCAGCTGGACAAGCAGTGGTGCACAGCATGTTGGTACTCAGCACAAGCACACAGGTTTA
ACTTTCCCAGATGTTGTGTCTGAACCACTTGTATCTGCATCAATGGTTCAACGTTTCAGT
AGCACTGATTATTCGAAATTTCTCAGTGAACAAGAAATGCTCTTAGTGAATGGACTGAAT
ACTGTCAACTTAACTGGAAATGGCTATTTAAAGCAGAGACTGCAGCCTGGATTGAGTGGT
TTACAGTCTATGGGGTATTCATCTCAGACACCTATTGAACCTGGTGGTACCACTGCAAAC
TCGATGCATAATCATCTGAAAATTACTGGAGAGAATGTGCCCTCTACACTTGATTCAGTT
GTACCTTCAATAGCTCCATTAGGTGGCATGCCAATGAAATTCACAGAAGCGCCACTAACT
GCTTCAAAGAAGAACCCTGTTAGTCGTCCATCAAAGCCTGTTGGGCCACCTCCAGGATTT
GATCATGTAGCCCCAAAGCGCCAAGATGATTCTATTCCAGTTGAAAAACTGCAGATCCCA
CAGGTTGATGATTACAGCTGGCTAGATGGTTATCAGCAATCGATTGATCATGTTCACAAC
TTAAGAACTGTTTATTCTGGTGTCAGTGACAGCACTGCATTTGCCACTCCATTCCCCTTC
CCTGGGAAACAACAGTTATCTGGGATGCATGCACAAGGGGCTACAAATGAAAAGACATGG
CAAGATTTCCGTCTTTTTGAGCCTTCAAAACAGAACATGCTCCAAAATTACCACCAAAGA
AATCAGCAAAATGGTCAAATAGCTGAACAAGAGCCAGCAAATTCTGTCTGGTCTAGCAGT
TACCATGTGTGA

Peptide Sequence

PEP ID

Zm00001d005502_P015
PEP Infomation

pep chromosome:B73_RefGen_v4:2:176557056:176561166:1 gene:Zm00001d005502 transcript:Zm00001d005502_T015 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SMG7
Sequence

MEEKHANARSFFWSQCISFMNKLILTNLASVNDDDDEACFSNMSIYEEGETGNRFALWED
LELRGFLPLLPAHTILDFSSKHTFGSTKEKKARVQRIFAAGKSLLNFVQIDQLRIYFDSS
SKKFVMAKNPPVSKTNTPLHESPDALKTSGTEMDYEAARRFDSVSSNMGTLQSKVQFCPD
GDDDEEIVFKPTASEKFPKAPSDLLVNGYTHPVPMSTAGWPTNASLVPVQSTGSMTATGW
PPNGGSNAFPSTASLSAAGNYNINQSLPRSSVGWAVNGEQSVIPSIAPRFELVQPVEEPV
SSWTSSGAQHVGTQHKHTGLTFPDVVSEPLVSASMVQRFSSTDYSKFLSEQEMLLVNGLN
TVNLTGNGYLKQRLQPGLSGLQSMGYSSQTPIEPGGTTANSMHNHLKITGENVPSTLDSV
VPSIAPLGGMPMKFTEAPLTASKKNPVSRPSKPVGPPPGFDHVAPKRQDDSIPVEKLQIP
QVDDYSWLDGYQQSIDHVHNLRTVYSGVSDSTAFATPFPFPGKQQLSGMHAQGATNEKTW
QDFRLFEPSKQNMLQNYHQRNQQNGQIAEQEPANSVWSSSYHV

Transcript Sequence

Transcript ID

Zm00001d005502_T015
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:176557056:176561166:1 gene:Zm00001d005502 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein SMG7
Sequence

TGCTCCAAAGTGCGTTTACGGCTGCTTTTGACTTTGTTGGACGAATTCTCAGAAGGTGTT
CAGAGCTCCATGATATTGCATCAAGCTTCTATCTGCCAGCCATTTTGGTCTATATTGAAT
GGCTGGCGTCCCATCCAGAGTTGGCTGTTGATTCAGAGATGGAGGAAAAGCATGCAAATG
CCAGGTCTTTCTTCTGGAGCCAATGCATCTCATTTATGAATAAGTTGATCCTTACCAACC
TTGCATCTGTGAATGATGATGATGACGAGGCTTGCTTTTCTAATATGAGCATTTATGAGG
AGGGTGAAACTGGCAACAGGTTTGCCCTTTGGGAAGATCTTGAATTGAGAGGTTTTCTGC
CCTTGCTTCCTGCACATACCATTTTGGATTTCTCAAGCAAACACACATTTGGAAGCACCA
AGGAGAAGAAAGCACGGGTTCAGCGAATTTTTGCTGCAGGAAAGTCACTGCTTAACTTTG
TTCAGATTGATCAGTTGAGAATTTATTTTGATTCATCATCGAAGAAGTTTGTTATGGCCA
AGAACCCTCCTGTTTCTAAAACTAACACCCCTCTTCACGAATCTCCTGATGCACTTAAAA
CAAGTGGCACTGAAATGGATTATGAGGCTGCTAGAAGATTTGATTCAGTTTCTTCTAATA
TGGGCACACTGCAGTCTAAAGTGCAGTTTTGTCCTGATGGTGACGATGATGAAGAAATTG
TTTTCAAGCCAACAGCTTCCGAAAAGTTTCCGAAAGCTCCTTCAGATCTGTTGGTTAATG
GATACACTCATCCTGTACCTATGTCTACTGCTGGCTGGCCAACCAATGCTAGTTTAGTGC
CTGTTCAGAGCACTGGATCAATGACTGCAACTGGTTGGCCACCCAATGGTGGGTCAAATG
CTTTTCCAAGTACTGCATCTCTATCAGCTGCTGGTAATTACAACATTAACCAGTCGCTTC
CCAGGTCTTCCGTTGGTTGGGCTGTCAATGGTGAGCAAAGTGTTATTCCTAGCATTGCTC
CAAGATTTGAACTCGTGCAGCCTGTTGAAGAGCCTGTTTCCAGCTGGACAAGCAGTGGTG
CACAGCATGTTGGTACTCAGCACAAGCACACAGGTTTAACTTTCCCAGATGTTGTGTCTG
AACCACTTGTATCTGCATCAATGGTTCAACGTTTCAGTAGCACTGATTATTCGAAATTTC
TCAGTGAACAAGAAATGCTCTTAGTGAATGGACTGAATACTGTCAACTTAACTGGAAATG
GCTATTTAAAGCAGAGACTGCAGCCTGGATTGAGTGGTTTACAGTCTATGGGGTATTCAT
CTCAGACACCTATTGAACCTGGTGGTACCACTGCAAACTCGATGCATAATCATCTGAAAA
TTACTGGAGAGAATGTGCCCTCTACACTTGATTCAGTTGTACCTTCAATAGCTCCATTAG
GTGGCATGCCAATGAAATTCACAGAAGCGCCACTAACTGCTTCAAAGAAGAACCCTGTTA
GTCGTCCATCAAAGCCTGTTGGGCCACCTCCAGGATTTGATCATGTAGCCCCAAAGCGCC
AAGATGATTCTATTCCAGTTGAAAAACTGCAGATCCCACAGGTTGATGATTACAGCTGGC
TAGATGGTTATCAGCAATCGATTGATCATGTTCACAACTTAAGAACTGTTTATTCTGGTG
TCAGTGACAGCACTGCATTTGCCACTCCATTCCCCTTCCCTGGGAAACAACAGTTATCTG
GGATGCATGCACAAGGGGCTACAAATGAAAAGACATGGCAAGATTTCCGTCTTTTTGAGC
CTTCAAAACAGAACATGCTCCAAAATTACCACCAAAGAAATCAGCAAAATGGTCAAATAG
CTGAACAAGAGCCAGCAAATTCTGTCTGGTCTAGCAGTTACCATGTGTGATTCAGTAACT
TGTACCAGGATGATTGCTGGTTTGAAGATGTTACAGTTTCATTTATATTTTGTTTTGCTG
GGGACTATTGGATTAAGTGGCACAGCCTGATCTATTGAGCTTGGCCCGTACCTGCAGCAC
TCTGTTAAATTTCTTTTGAGCATGGTGGTCTTTGAAGCATGACAATGGCTGCTCTTAGGT
TTGGGATTGCCACCATCTTCTGGGACAAAGAGGGAGTGGAGGATGATTGATCTGTCGGCA
GTCTGATGGGGATGAATTATACGAGGTCTTCAACGCTGACACAAAGGGTTAATGAAACAA
ACTCGAATCCAGTGATTATAGGCGCTCCGCACGGACCATATGATTCATCTCTCGTTGGAC
ATGTAGCTACAAGAATGGTGTCAGTGGGCGGTTGCTGCCGCAACTAAAAGTCCATTCAGT
GTGGATGTCAGTTGGGCTACGCTATCTAAGAATAAAAAGTTTGAGGAACAACGAGCATGT
TGCCAAGTAGTTTCTTAAGTATAAGTTACTGCGTCTAGTTATATTGTTCCTTTCCTTTCG
GAAACAATGTGTCATGTTGCTGTCGCGCTAGTTGCAAGTTGCAATTAAACGTTTGGAACA
GTTTGTCATGTTATTTGTGTGGCTTCTATATGGCTATATGTTTGCTGGAACTGTATGGAC
CAACCCTCGGTGCTACCTACAAAAGTCTATGATTTGAC