Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005431_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:2:173738300:173758928:1 gene:Zm00001d005431 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase GBA2 type family protein
Sequence

ATGTCACCTGTGATGGCCAATCAATTTTCGATCTTTGTCACTCGGGGAGGAACCAAGAAA
TACGCTTCAGTTTTGTCGCCTGGTCAACTTGATGGTTTGAAGAAATCTACTGATGATGGT
ATATCATCCTGGGACTGGAAATTAAAGGGTGATCGTTCAACGTATCATGCTTTGTTTCCT
CGAGCATGGACTGTTTATGATGGCGAGCCAGATCCTGAACTGAAAGTATCCTGCCGTCAA
ATATCTCCATTTATTCCCCATGATTACCAGGAGAGCAGCCTTCCTACCTCTGTTTTTGTA
TACACTCTAGTGAATACTGGAAAGGAAAGAGCAAAAGTTAGCCTATTGATGACTTGGGCG
AATTCTATAGGAGGACTTTCACATCATTCTGGGGATCATGTAAATGAGCCATTCGTAGGG
AAAAATGGAGTTTCTGGTGTTCTTCTACATCACAAGACAGCCAATAATAATCCTCCTGTA
ACATTTGCAATTGCGGCATGTGAAAATCAAAATGTAAATGTCACAGTATTGCCTGTTTTT
GGGCTTTCTGGAGAAAGTTCTGTTACTGCTAGGGGAATGTGGGGCACAATGGTTCAGGAT
GGTTCCTTTGATCAAGATAATCTCAATACTGGTCCTAGCATGCCTTCTTTGCTGGGCGAT
ACAGTTTGTGCAGCAGTTTCTGCTTCCACCTGGGTTGAACCACATGGAAGATGTGCAGTT
GTATTTGCATTGGCTTGGTCTTCTCCTCAGGTTAAATTTAAAAAGGGGAGTACATACTAC
AGGAGATATACAAAGTTTTATGGAACTTCTCCAAGATCAGCAGTAAATTTGGTAGAGGAC
GCTTTGATGAAGTATAAACATTGGGAAGAAGAGATTGATAAGTGGCAGACCCCGGTTCTC
CAAGATGAGAGGCTTCCAGAATGGTACAAGATTACACTCTTTAATGAGCTGTACTTCCTA
GTTGCTGGTGGAACCGTTTGGATTGATAGTGGATCTTTGGTGTCTGATGCTGATAACAAG
TCGAATCCAGAGGAAAGTAATTTGTCACATGAGATCGATGACAAAGAAAATGTTGGGAAA
TTTTTGTACCTTGAAGGAATAGAATACTTCATGTGGTGCACCTATGATGTACACTTCTAT
GCCTCCTTTGCTCTTTTGGATCTGTTTCCTAAGATTGAATTGAGCATTCAACGTGATTTT
GCTAGAGCTGTTTTGCGGGAAGATAACAGAAGAGTCAGATTTCTTGCTGATGGTACCTGG
GGTATTCGTAAAGTAATCGGTGCTGTCGCCCATGATCTTGGAGCACATGATCCTTGGCAT
GAATTGAATGCTTACAACATACATGACACAAGTAGATGGAAAGATCTTAATCCCAAGTTC
GTTCTTCAGATTTACAGGGATTTTGCTGCAACAGGTGACAAGTCATTTGGCAAGGATGTC
TGGCCTGCAGTCTGTACTGCTATGGAATACATGGAACAATTCGATCATGATGGTGATGGT
ATGATTGAAAATGATGGATTTCCTGATCAAACTTACGATGCTTGGACAGTTCAAGGAGTA
AGTGCATATTGTGGTTGCCTCTGGCTTGCTGCCCTTCAAGCTGCGGCAGCACTGGCCGGA
AGCCTTGGACATGATGACTATGCTGAGAGGTGCATGACAAGATTTGTGAAAGCTAAAACT
GTATTTGAAGCCAGGTTATGGAATGGTTCACACTTCAATTATGACAGTGGTACAAGTTAT
AGTAGCCGTTCCATCCAGGCAGATCAGCTGGCTGGACAATGGTATACTGCATCGTCAGGT
TTGCCTCCTCTATTTGATGAGGATAGGATAAAATGCACGCTTCAGAAAATATTTGACTAC
AATGTGATGAGGGTGAAAGGAGGACGTATGGGAGCCGTGAATGGTATGCATCCAAATGGG
AAGGTAGATGAAACCTGTATGCAGTCAAGAGAAATCTGGACAGGAGTAACATATAGTTTA
GCAGCAACGATGCTGCTCCATGGAATGGAGCATCAGGCCTTCACTACTGCAGAAGGCATT
TATACTGCAGGATGGTCTGAAGAGGGCTATGGGTACTGGTTCCAAACTCCAGAAGCATGG
ACAATTGATGGCCATTACAGGTCACTAATTTATATGCGCCCCCTTGCAATCTGGGCAATG
CAGTGGGCCTTGTCGCCTCCAAGGTCGATACTGGAGGCGCCGAAGGTAAATACAATGGAC
AGAGCTCACATTTCTCCAGGCACCTTCCAATTTCTCCAGGATAGCGTTAGAAAGATGACA
CCAAAAAACGGTTGTTTTGGAAACACTGTAATTAACTTGGATTGCTGA

Peptide Sequence

PEP ID

Zm00001d005431_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:2:173738300:173758928:1 gene:Zm00001d005431 transcript:Zm00001d005431_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase GBA2 type family protein
Sequence

MSPVMANQFSIFVTRGGTKKYASVLSPGQLDGLKKSTDDGISSWDWKLKGDRSTYHALFP
RAWTVYDGEPDPELKVSCRQISPFIPHDYQESSLPTSVFVYTLVNTGKERAKVSLLMTWA
NSIGGLSHHSGDHVNEPFVGKNGVSGVLLHHKTANNNPPVTFAIAACENQNVNVTVLPVF
GLSGESSVTARGMWGTMVQDGSFDQDNLNTGPSMPSLLGDTVCAAVSASTWVEPHGRCAV
VFALAWSSPQVKFKKGSTYYRRYTKFYGTSPRSAVNLVEDALMKYKHWEEEIDKWQTPVL
QDERLPEWYKITLFNELYFLVAGGTVWIDSGSLVSDADNKSNPEESNLSHEIDDKENVGK
FLYLEGIEYFMWCTYDVHFYASFALLDLFPKIELSIQRDFARAVLREDNRRVRFLADGTW
GIRKVIGAVAHDLGAHDPWHELNAYNIHDTSRWKDLNPKFVLQIYRDFAATGDKSFGKDV
WPAVCTAMEYMEQFDHDGDGMIENDGFPDQTYDAWTVQGVSAYCGCLWLAALQAAAALAG
SLGHDDYAERCMTRFVKAKTVFEARLWNGSHFNYDSGTSYSSRSIQADQLAGQWYTASSG
LPPLFDEDRIKCTLQKIFDYNVMRVKGGRMGAVNGMHPNGKVDETCMQSREIWTGVTYSL
AATMLLHGMEHQAFTTAEGIYTAGWSEEGYGYWFQTPEAWTIDGHYRSLIYMRPLAIWAM
QWALSPPRSILEAPKVNTMDRAHISPGTFQFLQDSVRKMTPKNGCFGNTVINLDC

Transcript Sequence

Transcript ID

Zm00001d005431_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:173738300:173758928:1 gene:Zm00001d005431 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase GBA2 type family protein
Sequence

ATAGATAGGAAAGAAATAAAGATAAGGGTTAAAGCTTTCTCGTAGCCTCCTCAGAACATA
CGGGCGATTGTCTTTTCGCCGGTGAGCCATTAATTCCGTCGAGCTGATTTCTTCTTGCTG
GTTTTGCCGGTTTTATTTTTTTCTTTTATTGGTAATTCTTGGCCGTGGCGACTGACGATT
CCTTTTGGCGCTTGTAATAGCACAAGCATAGCTAAAGTCGTCCCGTTTCCTCCTGGTTTC
AATCTGTTTGGAACTTTTGTTAGTTCCGGTCCATAGGGGGAATCGTACTATCCTGTGGTC
AAAATTGTCGCTTCTTTCTTTTGTCGCTCTCTCTATACACACCAAAAAGAAGGAAAAAAA
ACCACGATTTTTTCTCCCAACTTTGAGTAATTACCGAGTGTTTCTTCAAGTCGGAGCTCG
GCTCTGTGCTTAGCCGGGACCCTATACTTGGGGTTTTGGCGGGTCCATCGGAATGGTCAG
CGGGAATCTGCTCTACCGGAGGAAGCGCTCGTGGCGTGCCGATGAGTTCGTGAGCCGGAG
CACGCTGCAATTGCTCGACTTTGATGATGGCTCACCACCAGAGCATGCATGGAGAAGGAA
ACTAAGTAGTCATGCTAATAGATTGAAGGAGTTCAATGTCACATTCAGAGAAGCAATTAG
AATGATGAAACTTGGTCTCCGACTTTGGTCATACATTCGGGAAGAAGCTTCTCACGGAAG
GCTTGACAAATTACCAATTGGCAGAAAGCACCAATCGATCCATTCACTAGAGAGGGCAAC
AAGCCCTCAGCCTCGCAAGGAGTACCTCTTGGAGTGGTAGTATTTCAAGAGGCTTTAGGG
GAGAATTCAAGCATTGGCAGATAACTCCTGGTTCTTGTGAAATGTCACCTGTGATGGCCA
ATCAATTTTCGATCTTTGTCACTCGGGGAGGAACCAAGAAATACGCTTCAGTTTTGTCGC
CTGGTCAACTTGATGGTTTGAAGAAATCTACTGATGATGGTATATCATCCTGGGACTGGA
AATTAAAGGGTGATCGTTCAACGTATCATGCTTTGTTTCCTCGAGCATGGACTGTTTATG
ATGGCGAGCCAGATCCTGAACTGAAAGTATCCTGCCGTCAAATATCTCCATTTATTCCCC
ATGATTACCAGGAGAGCAGCCTTCCTACCTCTGTTTTTGTATACACTCTAGTGAATACTG
GAAAGGAAAGAGCAAAAGTTAGCCTATTGATGACTTGGGCGAATTCTATAGGAGGACTTT
CACATCATTCTGGGGATCATGTAAATGAGCCATTCGTAGGGAAAAATGGAGTTTCTGGTG
TTCTTCTACATCACAAGACAGCCAATAATAATCCTCCTGTAACATTTGCAATTGCGGCAT
GTGAAAATCAAAATGTAAATGTCACAGTATTGCCTGTTTTTGGGCTTTCTGGAGAAAGTT
CTGTTACTGCTAGGGGAATGTGGGGCACAATGGTTCAGGATGGTTCCTTTGATCAAGATA
ATCTCAATACTGGTCCTAGCATGCCTTCTTTGCTGGGCGATACAGTTTGTGCAGCAGTTT
CTGCTTCCACCTGGGTTGAACCACATGGAAGATGTGCAGTTGTATTTGCATTGGCTTGGT
CTTCTCCTCAGGTTAAATTTAAAAAGGGGAGTACATACTACAGGAGATATACAAAGTTTT
ATGGAACTTCTCCAAGATCAGCAGTAAATTTGGTAGAGGACGCTTTGATGAAGTATAAAC
ATTGGGAAGAAGAGATTGATAAGTGGCAGACCCCGGTTCTCCAAGATGAGAGGCTTCCAG
AATGGTACAAGATTACACTCTTTAATGAGCTGTACTTCCTAGTTGCTGGTGGAACCGTTT
GGATTGATAGTGGATCTTTGGTGTCTGATGCTGATAACAAGTCGAATCCAGAGGAAAGTA
ATTTGTCACATGAGATCGATGACAAAGAAAATGTTGGGAAATTTTTGTACCTTGAAGGAA
TAGAATACTTCATGTGGTGCACCTATGATGTACACTTCTATGCCTCCTTTGCTCTTTTGG
ATCTGTTTCCTAAGATTGAATTGAGCATTCAACGTGATTTTGCTAGAGCTGTTTTGCGGG
AAGATAACAGAAGAGTCAGATTTCTTGCTGATGGTACCTGGGGTATTCGTAAAGTAATCG
GTGCTGTCGCCCATGATCTTGGAGCACATGATCCTTGGCATGAATTGAATGCTTACAACA
TACATGACACAAGTAGATGGAAAGATCTTAATCCCAAGTTCGTTCTTCAGATTTACAGGG
ATTTTGCTGCAACAGGTGACAAGTCATTTGGCAAGGATGTCTGGCCTGCAGTCTGTACTG
CTATGGAATACATGGAACAATTCGATCATGATGGTGATGGTATGATTGAAAATGATGGAT
TTCCTGATCAAACTTACGATGCTTGGACAGTTCAAGGAGTAAGTGCATATTGTGGTTGCC
TCTGGCTTGCTGCCCTTCAAGCTGCGGCAGCACTGGCCGGAAGCCTTGGACATGATGACT
ATGCTGAGAGGTGCATGACAAGATTTGTGAAAGCTAAAACTGTATTTGAAGCCAGGTTAT
GGAATGGTTCACACTTCAATTATGACAGTGGTACAAGTTATAGTAGCCGTTCCATCCAGG
CAGATCAGCTGGCTGGACAATGGTATACTGCATCGTCAGGTTTGCCTCCTCTATTTGATG
AGGATAGGATAAAATGCACGCTTCAGAAAATATTTGACTACAATGTGATGAGGGTGAAAG
GAGGACGTATGGGAGCCGTGAATGGTATGCATCCAAATGGGAAGGTAGATGAAACCTGTA
TGCAGTCAAGAGAAATCTGGACAGGAGTAACATATAGTTTAGCAGCAACGATGCTGCTCC
ATGGAATGGAGCATCAGGCCTTCACTACTGCAGAAGGCATTTATACTGCAGGATGGTCTG
AAGAGGGCTATGGGTACTGGTTCCAAACTCCAGAAGCATGGACAATTGATGGCCATTACA
GGTCACTAATTTATATGCGCCCCCTTGCAATCTGGGCAATGCAGTGGGCCTTGTCGCCTC
CAAGGTCGATACTGGAGGCGCCGAAGGTAAATACAATGGACAGAGCTCACATTTCTCCAG
GCACCTTCCAATTTCTCCAGGATAGCGTTAGAAAGATGACACCAAAAAACGGTTGTTTTG
GAAACACTGTAATTAACTTGGATTGCTGATGTGACGGTAGCACTTGTATCTCGCACTGTC
CAATGTATGTTTACGGAGCACCTCATTTAGAAAATGTTGAGTGTGAAACGGGTGCTATAT
TCTGTTCAGCCTTTGCAGTTATGTGGTGTACCTCTCTGATGTAAATTGCATCTCACAGTG
GGCCGGACTTTGTAAATTGTTGTACAGAAAACGTACATATGATAATGCCGTGTTACCCTG
ATATT