Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005359_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:170959556:170961867:-1 gene:Zm00001d005359 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP-dependent protease Clp ATPase subunit

Sequence

ATGGGCGCCGGCGTCCTCCTCGGCGACGCCGCCGGCCTGGGGGCCCACCTCGCCGTACGC
CGCCGGAGGACGCGCCTCTACCTTCGCAACTGGGCCTCCAAGCCCCTGCGCCCCTCGGTC
TGGCTCGGCGTGGCCGCCTGTGTTTCACAGAATCGCGACCGCCGTGGCCACGTGACCAGG
TTCTCCGCCTCCGCCTCGAGCGGCAGTGACGAGCCCGGGGAGCTGTCCGAGGATGAGGCG
CAGAGGGAGTGGGAAGCGGAGCTGAATCGCCGACTGAAGGAGGCCGAGGAGATGGAGGAG
TTGGAGCGCACCGCCGAGCAGCTGCAAAGCCAGGCCGCCGCCGAGGCCCCCGAGGAGTCG
GAGGAGGAGAAGCGCGAGCGTGTCCGCCGCGAGCTCCAGAAGGTAGCGAAGGAGCAAGCG
GAGAGGAGGGAGACGGCGAAGCAAATGTTTGAGTTGGGTCAAAAGGCGTACGGGAAAGGA
ATGTATGGACGATCAATTGAATTCTTGGAGGCTGCGCTCACTATCATACGTCCCTCCTCT
CTACTCGGTGGCGAGATCCAAATTTGGCTTGCAATGGCATATGAAGCCAATAGGAGGCAC
AAGGATTGCATTGCATTGTACAAAGAGTTGGAGAGTAGCCACCCCATGATCAACATCAGG
CGCCAGGCAGCTGAGCTTAGATACATTTTAGAGGCACCCAAGTTGAAGATATCAAATGAC
GAGGTGGTCACAATACCACAAATTGGGAGCAGCTGGGATTGGTATGCTGGAACATGGAGT
GACAAAATCAAGGAACAAGAGGACAAGAAAAGGAAGATGAGTGCTGCTAGCAACCAAGTT
CAACCTTCTCCAAACATCTTTGGAGACCTCTCTTTCTTGCGACCGCCAAATGAATGGAAG
AAGAGTGCATGGGTGGTTGTTACCTTGTGGATCCTTTTGATAGGAACAGCAATCTATCTG
CAATCATGA

Peptide Sequence

PEP ID

Zm00001d005359_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:170959556:170961867:-1 gene:Zm00001d005359 transcript:Zm00001d005359_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP-dependent protease Clp ATPase subunit

Sequence

MGAGVLLGDAAGLGAHLAVRRRRTRLYLRNWASKPLRPSVWLGVAACVSQNRDRRGHVTR
FSASASSGSDEPGELSEDEAQREWEAELNRRLKEAEEMEELERTAEQLQSQAAAEAPEES
EEEKRERVRRELQKVAKEQAERRETAKQMFELGQKAYGKGMYGRSIEFLEAALTIIRPSS
LLGGEIQIWLAMAYEANRRHKDCIALYKELESSHPMINIRRQAAELRYILEAPKLKISND
EVVTIPQIGSSWDWYAGTWSDKIKEQEDKKRKMSAASNQVQPSPNIFGDLSFLRPPNEWK
KSAWVVVTLWILLIGTAIYLQS

Transcript Sequence

Transcript ID

Zm00001d005359_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:170959556:170961867:-1 gene:Zm00001d005359 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP-dependent protease Clp ATPase subunit

Sequence

GAGATTGTTCATCGAGCTGTCTTGTCCCCCTCTTGGCCTCTTCTTTCCGGCGATGGGCGC
CGGCGTCCTCCTCGGCGACGCCGCCGGCCTGGGGGCCCACCTCGCCGTACGCCGCCGGAG
GACGCGCCTCTACCTTCGCAACTGGGCCTCCAAGCCCCTGCGCCCCTCGGTCTGGCTCGG
CGTGGCCGCCTGTGTTTCACAGAATCGCGACCGCCGTGGCCACGTGACCAGGTTCTCCGC
CTCCGCCTCGAGCGGCAGTGACGAGCCCGGGGAGCTGTCCGAGGATGAGGCGCAGAGGGA
GTGGGAAGCGGAGCTGAATCGCCGACTGAAGGAGGCCGAGGAGATGGAGGAGTTGGAGCG
CACCGCCGAGCAGCTGCAAAGCCAGGCCGCCGCCGAGGCCCCCGAGGAGTCGGAGGAGGA
GAAGCGCGAGCGTGTCCGCCGCGAGCTCCAGAAGGTAGCGAAGGAGCAAGCGGAGAGGAG
GGAGACGGCGAAGCAAATGTTTGAGTTGGGTCAAAAGGCGTACGGGAAAGGAATGTATGG
ACGATCAATTGAATTCTTGGAGGCTGCGCTCACTATCATACGTCCCTCCTCTCTACTCGG
TGGCGAGATCCAAATTTGGCTTGCAATGGCATATGAAGCCAATAGGAGGCACAAGGATTG
CATTGCATTGTACAAAGAGTTGGAGAGTAGCCACCCCATGATCAACATCAGGCGCCAGGC
AGCTGAGCTTAGATACATTTTAGAGGCACCCAAGTTGAAGATATCAAATGACGAGGTGGT
CACAATACCACAAATTGGGAGCAGCTGGGATTGGTATGCTGGAACATGGAGTGACAAAAT
CAAGGAACAAGAGGACAAGAAAAGGAAGATGAGTGCTGCTAGCAACCAAGTTCAACCTTC
TCCAAACATCTTTGGAGACCTCTCTTTCTTGCGACCGCCAAATGAATGGAAGAAGAGTGC
ATGGGTGGTTGTTACCTTGTGGATCCTTTTGATAGGAACAGCAATCTATCTGCAATCATG
AATGGCTCCTGCAGCTCTGAAACAAGCCATTCACATCTCTGCGAGGCACTGGTCCATGGT
TCAACAGAACCCAGAGATGTCGCTAATATGGCCGTGTCTCAGACTGTTGCATTTGTTGTT
TTTTTTTGCTGCAGTGTAAATACTAACTACTGTAACTAGCAATACAAGCAGATGCCATCT
AGTTCAATTGATTAGAAATCAATCTGTCTGCTCATATACACTTGATGATATTGCATCTGG
AGTTGATTTGAT