Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005349_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:170601641:170603719:1 gene:Zm00001d005349 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGTCCGCCGCGGCGGCGCTTTTACCACGGCCACCACCGCCAAATCCTGCCGCCACCGTC
CATTCACTCTTCGCCTACCTATCCGACCCGGCCGCCCTCCACCACCTACCCGCCCCGCTC
CTTGCCTTCTCCCAACTCCGCCACCTGCTGCCGCCCGCCGCCGCCACCCAACTCCTCCTT
CGCCCCATCGCCTCGCTCCTCCAACTCCACCGCTCCGACCTCCGCATAGGCCTCCAGCTT
CACGGGCTCTCCCTGTCCCTCGGCCTCTCCTGCTACTCGCACTTACTGCCCCGCCTCCTC
TCCTTCTACTCACACCACCCGTCGCTCCTCCCCGCCGCCTCCTCCCTCGCCGCCGGTTCC
ACGTGCCCCGAACCCTACAATGTCCTCATCTCCAACTGCCTCAACCACGGCCTCCCGCAC
CACGCGCTGGCCGCGTACCATGAGATGATCGACAAGGATGCCGTTCCCCCTGATGCCTTC
ACTTACCCCAAAGTGCTCCGTGCCTGTGCCGAGACCGGGAACCTCGCTCTCGGGCGGGCG
GTGCACGTGCGCGCCGTGGACGCCGGCATGGACGGGCACCTGTTTTTCCAGAACGCACTG
GTGTCCATGTACGCCAAGTGTTGGGACCTTGCGGCTGCGCGCACGGTGTTCGACGGAATG
GAACATAGGGATGTGGTGTCGTGGAACTCGATGATCTCTGGCTACGCTGCATCTGGACAG
TGGAGAAAGGCAGTAGAGCTATTTCTTCGAATGCAGGCTGAGGGTGCGGAGATGAACTCA
GTGACATGGAACACGATCGCCGGCGGTTACATTCAGATGCATGATTACAGGGCAGCAGTT
GGATTAATTCGGGATATGGTGAGAGGTGGTGCGAGCATTGATTTTGTGACTTTGGTGATT
GGATCAAACGCATGCTCACGGGCAGGATGGTTGAGGCTTGGGAAAGAGATACATGGGTTG
GCAGTCCGAATGCAATGTCACGAAATCGACAGTGTGATCAATGCAGTGATCACAATGTAT
GCCAGGTGCAACGATATGGAGCGTGCTCTCATGCTGTTCAAGATGATAAGATGCCCGGGT
CTAGTAGCATGGAATACAACGATAGCTGGTTTTGCATTATTGGATGATGCAGAAGCAGCT
TCTAGACTTTTCCGTGAAATGGTGGTATGCGGTGATGTGCAACCGAATTATGTTACTGTG
GTCACCTACCTTGCCTTGTGTGCCCGTGTTGCTAACCTGCAGCATGGGCGGGAGCTTCAC
ACGCACATTGTTAAGCAAGGATTCAAAGGGTATCGTCTACTGTGGAACTCTCTTATTGAT
ATGTACTCAAAATCAGGGAGGCTTTCAGTGGCTCAAAATGTATTTGATACTATGGATGAC
CCTGACATGATATCCTTCACTTCAATGATAGCAGGATATGGAATGCAAGGAAAAGGAATT
ATTTCTCTGCGCTTTTTCAAACAGATGATTGACAGTGGGATCATGCCAGATGCCATCATC
ATGGTTACTGTACTCTCTGCTTGTAGCCACTCTGGGCTTGTGGGTGAAGGGGAAGAGCTT
TTTGACAAGATGGTGAAGTCATATGGTATAAAGCCCCAGATGGAGCACTATTCTTGCATG
GTTGATCTATATGCACGTGCTGGACTATTGGAAAAGGCGGAAGAATTGCTCAACCAGACT
CCCTTCCCTCCGACATCAACAATGGTTGCAGCATTAGTAGGAGCTTGCCATGAGCAAGGT
AACATAATAATTGGTGAAAGGTCAGCAAGAAGGCTCTTGGAGATGAAGACAGAGAACGCT
GGGCACTTCGTTCTGATTGCTAACATGTATGCAGCTGCAGGTTGCTGGAATGAGCTAGCA
ACAGTCAGAAAACTGATGAGAGATCTGGGTGTCATGAAAGCACCTGGGTTAGCATGGGCC
GACCTTGGTAACGGGTTTACCCCTTTTCTGGTTGGGGATAGGTCGAACCCTCTAGCTCCA
GAAATCTATGAGGTTTTGGATGAACTAACTGAACAAATGAGTAATATGAATAATTGCAGT
GATCCGGACATACTATCCATGGAGGAACACATGGAGTAA

Peptide Sequence

PEP ID

Zm00001d005349_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:170601641:170603719:1 gene:Zm00001d005349 transcript:Zm00001d005349_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MSAAAALLPRPPPPNPAATVHSLFAYLSDPAALHHLPAPLLAFSQLRHLLPPAAATQLLL
RPIASLLQLHRSDLRIGLQLHGLSLSLGLSCYSHLLPRLLSFYSHHPSLLPAASSLAAGS
TCPEPYNVLISNCLNHGLPHHALAAYHEMIDKDAVPPDAFTYPKVLRACAETGNLALGRA
VHVRAVDAGMDGHLFFQNALVSMYAKCWDLAAARTVFDGMEHRDVVSWNSMISGYAASGQ
WRKAVELFLRMQAEGAEMNSVTWNTIAGGYIQMHDYRAAVGLIRDMVRGGASIDFVTLVI
GSNACSRAGWLRLGKEIHGLAVRMQCHEIDSVINAVITMYARCNDMERALMLFKMIRCPG
LVAWNTTIAGFALLDDAEAASRLFREMVVCGDVQPNYVTVVTYLALCARVANLQHGRELH
THIVKQGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDPDMISFTSMIAGYGMQGKGI
ISLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVGEGEELFDKMVKSYGIKPQMEHYSCM
VDLYARAGLLEKAEELLNQTPFPPTSTMVAALVGACHEQGNIIIGERSARRLLEMKTENA
GHFVLIANMYAAAGCWNELATVRKLMRDLGVMKAPGLAWADLGNGFTPFLVGDRSNPLAP
EIYEVLDELTEQMSNMNNCSDPDILSMEEHME

Transcript Sequence

Transcript ID

Zm00001d005349_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:170601641:170603719:1 gene:Zm00001d005349 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGTCCGCCGCGGCGGCGCTTTTACCACGGCCACCACCGCCAAATCCTGCCGCCACCGTC
CATTCACTCTTCGCCTACCTATCCGACCCGGCCGCCCTCCACCACCTACCCGCCCCGCTC
CTTGCCTTCTCCCAACTCCGCCACCTGCTGCCGCCCGCCGCCGCCACCCAACTCCTCCTT
CGCCCCATCGCCTCGCTCCTCCAACTCCACCGCTCCGACCTCCGCATAGGCCTCCAGCTT
CACGGGCTCTCCCTGTCCCTCGGCCTCTCCTGCTACTCGCACTTACTGCCCCGCCTCCTC
TCCTTCTACTCACACCACCCGTCGCTCCTCCCCGCCGCCTCCTCCCTCGCCGCCGGTTCC
ACGTGCCCCGAACCCTACAATGTCCTCATCTCCAACTGCCTCAACCACGGCCTCCCGCAC
CACGCGCTGGCCGCGTACCATGAGATGATCGACAAGGATGCCGTTCCCCCTGATGCCTTC
ACTTACCCCAAAGTGCTCCGTGCCTGTGCCGAGACCGGGAACCTCGCTCTCGGGCGGGCG
GTGCACGTGCGCGCCGTGGACGCCGGCATGGACGGGCACCTGTTTTTCCAGAACGCACTG
GTGTCCATGTACGCCAAGTGTTGGGACCTTGCGGCTGCGCGCACGGTGTTCGACGGAATG
GAACATAGGGATGTGGTGTCGTGGAACTCGATGATCTCTGGCTACGCTGCATCTGGACAG
TGGAGAAAGGCAGTAGAGCTATTTCTTCGAATGCAGGCTGAGGGTGCGGAGATGAACTCA
GTGACATGGAACACGATCGCCGGCGGTTACATTCAGATGCATGATTACAGGGCAGCAGTT
GGATTAATTCGGGATATGGTGAGAGGTGGTGCGAGCATTGATTTTGTGACTTTGGTGATT
GGATCAAACGCATGCTCACGGGCAGGATGGTTGAGGCTTGGGAAAGAGATACATGGGTTG
GCAGTCCGAATGCAATGTCACGAAATCGACAGTGTGATCAATGCAGTGATCACAATGTAT
GCCAGGTGCAACGATATGGAGCGTGCTCTCATGCTGTTCAAGATGATAAGATGCCCGGGT
CTAGTAGCATGGAATACAACGATAGCTGGTTTTGCATTATTGGATGATGCAGAAGCAGCT
TCTAGACTTTTCCGTGAAATGGTGGTATGCGGTGATGTGCAACCGAATTATGTTACTGTG
GTCACCTACCTTGCCTTGTGTGCCCGTGTTGCTAACCTGCAGCATGGGCGGGAGCTTCAC
ACGCACATTGTTAAGCAAGGATTCAAAGGGTATCGTCTACTGTGGAACTCTCTTATTGAT
ATGTACTCAAAATCAGGGAGGCTTTCAGTGGCTCAAAATGTATTTGATACTATGGATGAC
CCTGACATGATATCCTTCACTTCAATGATAGCAGGATATGGAATGCAAGGAAAAGGAATT
ATTTCTCTGCGCTTTTTCAAACAGATGATTGACAGTGGGATCATGCCAGATGCCATCATC
ATGGTTACTGTACTCTCTGCTTGTAGCCACTCTGGGCTTGTGGGTGAAGGGGAAGAGCTT
TTTGACAAGATGGTGAAGTCATATGGTATAAAGCCCCAGATGGAGCACTATTCTTGCATG
GTTGATCTATATGCACGTGCTGGACTATTGGAAAAGGCGGAAGAATTGCTCAACCAGACT
CCCTTCCCTCCGACATCAACAATGGTTGCAGCATTAGTAGGAGCTTGCCATGAGCAAGGT
AACATAATAATTGGTGAAAGGTCAGCAAGAAGGCTCTTGGAGATGAAGACAGAGAACGCT
GGGCACTTCGTTCTGATTGCTAACATGTATGCAGCTGCAGGTTGCTGGAATGAGCTAGCA
ACAGTCAGAAAACTGATGAGAGATCTGGGTGTCATGAAAGCACCTGGGTTAGCATGGGCC
GACCTTGGTAACGGGTTTACCCCTTTTCTGGTTGGGGATAGGTCGAACCCTCTAGCTCCA
GAAATCTATGAGGTTTTGGATGAACTAACTGAACAAATGAGTAATATGAATAATTGCAGT
GATCCGGACATACTATCCATGGAGGAACACATGGAGTAA