Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d005308_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:2:169022770:169026841:1 gene:Zm00001d005308 gene_biotype:protein_coding transcript_biotype:protein_coding description:P-loop NTPase domain-containing protein LPA1 homolog 1
Sequence	ATGGCGTCGGCGAAGCTGCTGTACATTGTGGTGGTTGACGAGAACGCCTCCTCCTTCCGA TACACGCGCTCCCTCCTCCATAGCACCCTCCAGCTCATGGGATGCAAGCCACGCCACGCC TTCGAGATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGACCACCAGGGCCACGGCGAC ACGGCCACCTCCGCCCGGGTACAAAGGTACGAGGTCGCCGAAGCCACCCCGACCGCAAGC CCCCGCCAGTTCCAGTTCGAGCTATACAAGCGCCGGACCACCGTCCTCCTCCCAAGGGAC CTCTTCCTCGACCTCGTCCTCGACGCCCTCGCCCTCTACAAGTACGTTGCCCCCAACCAG CGCGCCGATCTCATGCTCGCCTGCAGGATTCGTGAACGAAAGGAATCTATCACGGTTCTT CTTTGTGGAACTAGTGGCTGTGGCAAGTCTACTCTTTCTACGTTGCTGGGAAGCAGGTTA GGAATTACAACTGTAGTTTCTACAGATTCAATACGTCACATGATGCGAAGCTTTGTTGAA GAAAAAGAAAACCCTCTTCTCTGGGCATCAACTTACCATGCAGGTGAATGTCTTGATCCA GTAGCAGTTGCTGAAGCAAAAGCTAGGAGGAAAGCAAAAAAACGCTCAGGCGTATCAAGC AGCTCAACTATTGATTATGAGAAAAGTGGGTCTCTTACCGAAAAAGTTGATGGGAAATCA ATCGGGAAGAAGCAAATGGCCGTTGAAGGTTTTAAAGCACAGAGCGAGATGGTGATTGAT AGTTTGGATCGGTTAATTACTGCGTGGGAAGATAGGAAAGAATCAGTTGTTGTCGAGGGT GTTCACTTAAGCCTTAATTTTGTGATGGGTCTAATGAGGAAACATCCTTCGATCATACCT TTCATGATCTACATCTCTAATGAGGGTAAGCACACAGAGAGGTTTGCTGTACGTGCAAAG TACATGACACTTGACCCAACAAAAAATAAGTATGTTAAATACATCAGCAACATTAGAACT ATCCAGGAGTATCTCTGCAGCAGAGCTGACAAGTACCTAGTTCCCAAGGTCAACAACACT AATGTTGATCGGAGCGTGGCTTCGATCCATGCCACTGTCTTCAGTTGCCTCCGTAGGCGA AGTAATGGAGATCAATTATACGACCCTGAAGGAAATACTATTGCTATTGTAAATGAAGAG TACAAAAACCAATGTGTGGCTAATTCCATGAGTTCCAAGGGGATGTTTAAATTGATCCAA CGTCTTGGATCCTCAAGAAAGCTCATGGCCATCATTAATGTCGACGGTTCTGTTTCTAAG GCCTGGCCAGTTGAGTCTAGTGGAGATGGAAAATGCAGTTCTGACAACAGTAATAAGAAA TCTGTGGGGAATCCAATCTATGGACCTCTAAATATTGGAAGAGCAGAGTCAGTCAATCTG CAGTTTGGCACCTTTGGAATAAGTGCCTGGCCTACTGATACAGGCTGTACAAGTCAAGCT GGAAATGCTGATGAATCATGGGTAAATGCTGCTGAAGGTAGTAGCAGTCATGTTCAATCA TCATCCGGTTCTACGAAGAAGTTGGATGGACATTGTAAAGAGGTACTAACTGCTACTTGT ACCATGGAATTAATCATCTTTGTAAGGCTAGTGTCCTATTTTGAATTTTCTTTATTACTT TTTTGGGGCTAG

Peptide Sequence

PEP ID	Zm00001d005308_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:2:169022770:169026841:1 gene:Zm00001d005308 transcript:Zm00001d005308_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:P-loop NTPase domain-containing protein LPA1 homolog 1
Sequence	MASAKLLYIVVVDENASSFRYTRSLLHSTLQLMGCKPRHAFEISRRVFDVIRGDHQGHGD TATSARVQRYEVAEATPTASPRQFQFELYKRRTTVLLPRDLFLDLVLDALALYKYVAPNQ RADLMLACRIRERKESITVLLCGTSGCGKSTLSTLLGSRLGITTVVSTDSIRHMMRSFVE EKENPLLWASTYHAGECLDPVAVAEAKARRKAKKRSGVSSSSTIDYEKSGSLTEKVDGKS IGKKQMAVEGFKAQSEMVIDSLDRLITAWEDRKESVVVEGVHLSLNFVMGLMRKHPSIIP FMIYISNEGKHTERFAVRAKYMTLDPTKNKYVKYISNIRTIQEYLCSRADKYLVPKVNNT NVDRSVASIHATVFSCLRRRSNGDQLYDPEGNTIAIVNEEYKNQCVANSMSSKGMFKLIQ RLGSSRKLMAIINVDGSVSKAWPVESSGDGKCSSDNSNKKSVGNPIYGPLNIGRAESVNL QFGTFGISAWPTDTGCTSQAGNADESWVNAAEGSSSHVQSSSGSTKKLDGHCKEVLTATC TMELIIFVRLVSYFEFSLLLFWG

Transcript Sequence

Transcript ID	Zm00001d005308_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:169022770:169026841:1 gene:Zm00001d005308 gene_biotype:protein_coding transcript_biotype:protein_coding description:P-loop NTPase domain-containing protein LPA1 homolog 1
Sequence	AGACGACGCAAGGGAAAGGAGAGCCACCGGAGCGGACCGCCACCTTCCCTTCTGCCGGCG ACCTCCAGCCACGGCGCCCATGGCGTCGGCGAAGCTGCTGTACATTGTGGTGGTTGACGA GAACGCCTCCTCCTTCCGATACACGCGCTCCCTCCTCCATAGCACCCTCCAGCTCATGGG ATGCAAGCCACGCCACGCCTTCGAGATCAGCCGCAGGGTGTTTGATGTCATCCGGGGTGA CCACCAGGGCCACGGCGACACGGCCACCTCCGCCCGGGTACAAAGGTACGAGGTCGCCGA AGCCACCCCGACCGCAAGCCCCCGCCAGTTCCAGTTCGAGCTATACAAGCGCCGGACCAC CGTCCTCCTCCCAAGGGACCTCTTCCTCGACCTCGTCCTCGACGCCCTCGCCCTCTACAA GTACGTTGCCCCCAACCAGCGCGCCGATCTCATGCTCGCCTGCAGGATTCGTGAACGAAA GGAATCTATCACGGTTCTTCTTTGTGGAACTAGTGGCTGTGGCAAGTCTACTCTTTCTAC GTTGCTGGGAAGCAGGTTAGGAATTACAACTGTAGTTTCTACAGATTCAATACGTCACAT GATGCGAAGCTTTGTTGAAGAAAAAGAAAACCCTCTTCTCTGGGCATCAACTTACCATGC AGGTGAATGTCTTGATCCAGTAGCAGTTGCTGAAGCAAAAGCTAGGAGGAAAGCAAAAAA ACGCTCAGGCGTATCAAGCAGCTCAACTATTGATTATGAGAAAAGTGGGTCTCTTACCGA AAAAGTTGATGGGAAATCAATCGGGAAGAAGCAAATGGCCGTTGAAGGTTTTAAAGCACA GAGCGAGATGGTGATTGATAGTTTGGATCGGTTAATTACTGCGTGGGAAGATAGGAAAGA ATCAGTTGTTGTCGAGGGTGTTCACTTAAGCCTTAATTTTGTGATGGGTCTAATGAGGAA ACATCCTTCGATCATACCTTTCATGATCTACATCTCTAATGAGGGTAAGCACACAGAGAG GTTTGCTGTACGTGCAAAGTACATGACACTTGACCCAACAAAAAATAAGTATGTTAAATA CATCAGCAACATTAGAACTATCCAGGAGTATCTCTGCAGCAGAGCTGACAAGTACCTAGT TCCCAAGGTCAACAACACTAATGTTGATCGGAGCGTGGCTTCGATCCATGCCACTGTCTT CAGTTGCCTCCGTAGGCGAAGTAATGGAGATCAATTATACGACCCTGAAGGAAATACTAT TGCTATTGTAAATGAAGAGTACAAAAACCAATGTGTGGCTAATTCCATGAGTTCCAAGGG GATGTTTAAATTGATCCAACGTCTTGGATCCTCAAGAAAGCTCATGGCCATCATTAATGT CGACGGTTCTGTTTCTAAGGCCTGGCCAGTTGAGTCTAGTGGAGATGGAAAATGCAGTTC TGACAACAGTAATAAGAAATCTGTGGGGAATCCAATCTATGGACCTCTAAATATTGGAAG AGCAGAGTCAGTCAATCTGCAGTTTGGCACCTTTGGAATAAGTGCCTGGCCTACTGATAC AGGCTGTACAAGTCAAGCTGGAAATGCTGATGAATCATGGGTAAATGCTGCTGAAGGTAG TAGCAGTCATGTTCAATCATCATCCGGTTCTACGAAGAAGTTGGATGGACATTGTAAAGA GGTACTAACTGCTACTTGTACCATGGAATTAATCATCTTTGTAAGGCTAGTGTCCTATTT TGAATTTTCTTTATTACTTTTTTGGGGCTAGATCAAAGAGTCATCAGCAGCATATGGCAG TGATGAAGAAGAGGAAGAAGAAGCTGATGTCCGTCCTAATTCAGGGAGTGATGAGGACCT AAGTGAAGAAGACACCATGGAGATCGATGAGGAGGTGAGATGAAGTCTTTATTTGGATTG TTACAGGCTTTTTCCTTTTTTTCTTTTATCCTAAACAGTAGGTAAAAGGATTCACCCATG TAGTTGCTTTCTCTGCACTCTACGCTCTGGATCCCTTTGTAAGCATATTTGTGGATGTTT GCATGGCAGATGGAAGGGTCTGTGGACGAGGACTGCAACAGGTCTGATGAGGAATATGAC GACCTGGCCATGCGGGACAGTTTGGAGAACGGCTATTTAACTGACGATGGTGTTTTCTGT TCTGGTTTAAGCAACTCGTCAAGCGGCAAGTTCTTTGGTGGCAATCAACTAAGCCACAGC ACGCCAAAGAAACCCCAAGAGAAGTTCGATGCTGGTGTTCCTGAGACGTCACGCTCTTAT TCTGCTGCAGTCCCTGCTGGTACAAGTAGCAAGCGGCATGCTACTAGGAAGTGGAAGCGC TCGCTCAGTGACCCCTTCCGTTCACGGCCGCACAGTGCTCCGGAATTGGTGTCAGGATGC AAGGGATCACCGCCCGTGCCTGTGGCTCCAGAGGAGAGGTAGCCGATGAGCTACAGAAGA CGTATCGTGTTATGTTTTTTAGCATAAATTGCAAATGAATTATGAATATTGTTATCTGAG GCATCATGGATGTGAAAAAAGTACTATGCAACTAACTTTTTAAGGTGTTGATTTTGTAAG AGGATGTTTGGTGAAAGGACCAAGATGTCCATAGGAATTGAATTAGGCTAATGTAATTTT TTAATAATTAAATTATATCAAATAGTTCACTC