Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005269_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:166454066:166466651:1 gene:Zm00001d005269 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein NEDD1
Sequence

ATGTATAACTGCAAAGATGAACATTTGGCATCGATCAGCATGAAGGGGGACCTGATTCTT
CATAATCTTGCTTCTGGAGCACGTGTTTCTGAACTTAGCGATCCAAACGGACAGGTTCTG
AGAGTGCTTGATTATTCACGAAATAGTAGGCATTTATTGGTGACAGCTGGAGATGATGGT
TCTGTGCATCTTTGGGATACAACTGCAAAGTCTCCTAAGGTTTCATGGCTGAAGCAACAT
TCTGCACCCACAAGTGGTGTTTGTATTTCACCATCCAGTGATAAGATAATTGCTACAGTG
GGCCTTGATAAGAAGTTATACACTTTAGATTCAGGGTCAAGACGGCCGGCCCACACTATT
CCTCATGAGGCCCCATTCTCCTCATTGGCGTATAATGATGATGGTACTATAATAGCAGCG
GGCACTAACAGTGGACGTGTGGTGTTCTATGATATTCGAGGAAAACCAAAGCCATTGACC
ATCCTTCGTGCATATAATACTTCTGAGGCTGTGACAGGTTTATGCTGGCAACGGTCGAAG
CCTGTCGTTGTTAATGAGAACAGTTCTTCTGAAGTTGCTCTTCTTGGGGGAACTAATGAA
GAGTCTGTTCTTATGCCAGATCCCTTGCCTTCAGCAACACCTACAGGCCTTGGTTCTGGG
GTGGCCACTACAAGTCTTCTCTCTTTGACAGCAAACACAAGTGGCTATCTTTCGGCCTCA
AATTCTTCTACTATGGAGGAAACACCATATAGAACTCGTCCGCTGACTGGTGGACCGTTA
TCAAAGCTACAGGCTCCTCTTAGTAACTATAATCTGAAGGATGATATGGATGTATTTTCT
CCACTTGTTGATGTCCAGCCTTTCACACCATCTAGTGGCAACTGGTGGGATGAGCATGGA
AGTGATGATGCAAAAAAGGATGATAAACCAGGAGAAAAGAAATTTTCAACAACCAGGAAG
TATTCGTATATGGAAGGCAATGATGAGCCACATCCGATTGCAGATTGGCGGTCTACTGCA
AGACAGGATAGCATCTCATCTGTGACTACTACATCCATGCCATCATGGAAGAGCGAACTG
TCTGTATCTTCGCCAGAGCCAGCAACTGGAAATGCATTACCAGACAGGCTTACTCAACGT
CAACTGATCTCACGCTTTGGGTCTTCAGCCTTTCCAACTGGTGGCTTGGCATTTACAGCC
TCACAAGATCCAGCTTCAGCACCCAGTCACTCACTGAAGGGTTCTCTTACAAGTAACATT
TTAATGAATCTACAAAACAAGGGCATCTTGAACAATGTATCCTCTTCCCTGGACGCATCC
TCTCCTAATCTTCAGAGTTCACTTCCCTCATCATATGTTTCAAAAACTATGCCATCTGTG
ATTCCTGATCAACTAGGAGCAGCACAATCCACTTCTTTGTGGAGACCCACAACATATACT
GATAGAATGAGCTCATCATCTGTTTTTAGTGATGGATTAGCTTCAGCATTTGGCTCACCC
AAATCAAAGAAGACAGGAGCAGAAGCAAAAGATGAGTTGCTCAGTAACATTTTGTCAAGA
CAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATGGGGTAGTGCCACCA
CAACTGGCGAACACAGGTTCTTCATCTGATCAACTCGGCGCTTCTTCCTTCTCACTTCAG
TATGTGCAGCGCATGCTTGAAGAATCTCTTGGGTCTGTCCAGAAGTCCATCCATGAGGAT
GTGAGAAATCTCCACATTGAACTTTTAAGACAGTTTCACATGCACGAGATGGAAATGTCA
GGCGTGCTGAACTTGGTCCTGGAAAAGGTGGAAGGCCTGACAAAAGAAGTGCAGCAACTA
AGAAGGGAGAACCAACAGCTCAGGCAGCAGCTTCTCTAA

Peptide Sequence

PEP ID

Zm00001d005269_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:166454066:166466651:1 gene:Zm00001d005269 transcript:Zm00001d005269_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein NEDD1
Sequence

MYNCKDEHLASISMKGDLILHNLASGARVSELSDPNGQVLRVLDYSRNSRHLLVTAGDDG
SVHLWDTTAKSPKVSWLKQHSAPTSGVCISPSSDKIIATVGLDKKLYTLDSGSRRPAHTI
PHEAPFSSLAYNDDGTIIAAGTNSGRVVFYDIRGKPKPLTILRAYNTSEAVTGLCWQRSK
PVVVNENSSSEVALLGGTNEESVLMPDPLPSATPTGLGSGVATTSLLSLTANTSGYLSAS
NSSTMEETPYRTRPLTGGPLSKLQAPLSNYNLKDDMDVFSPLVDVQPFTPSSGNWWDEHG
SDDAKKDDKPGEKKFSTTRKYSYMEGNDEPHPIADWRSTARQDSISSVTTTSMPSWKSEL
SVSSPEPATGNALPDRLTQRQLISRFGSSAFPTGGLAFTASQDPASAPSHSLKGSLTSNI
LMNLQNKGILNNVSSSLDASSPNLQSSLPSSYVSKTMPSVIPDQLGAAQSTSLWRPTTYT
DRMSSSSVFSDGLASAFGSPKSKKTGAEAKDELLSNILSRQTAAGSSSAIPLASNGVVPP
QLANTGSSSDQLGASSFSLQYVQRMLEESLGSVQKSIHEDVRNLHIELLRQFHMHEMEMS
GVLNLVLEKVEGLTKEVQQLRRENQQLRQQLL

Transcript Sequence

Transcript ID

Zm00001d005269_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:166454066:166466651:1 gene:Zm00001d005269 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein NEDD1
Sequence

GATATCTCTGTTCCTGTGGAAGTGGCCATATTGTTAGGATATGGGATTTGCAGCGTAAGA
GATGTATCAAATGGCTAAGCGGTCACACTGACACAATTACTGGCGTAATGTATAACTGCA
AAGATGAACATTTGGCATCGATCAGCATGAAGGGGGACCTGATTCTTCATAATCTTGCTT
CTGGAGCACGTGTTTCTGAACTTAGCGATCCAAACGGACAGGTTCTGAGAGTGCTTGATT
ATTCACGAAATAGTAGGCATTTATTGGTGACAGCTGGAGATGATGGTTCTGTGCATCTTT
GGGATACAACTGCAAAGTCTCCTAAGGTTTCATGGCTGAAGCAACATTCTGCACCCACAA
GTGGTGTTTGTATTTCACCATCCAGTGATAAGATAATTGCTACAGTGGGCCTTGATAAGA
AGTTATACACTTTAGATTCAGGGTCAAGACGGCCGGCCCACACTATTCCTCATGAGGCCC
CATTCTCCTCATTGGCGTATAATGATGATGGTACTATAATAGCAGCGGGCACTAACAGTG
GACGTGTGGTGTTCTATGATATTCGAGGAAAACCAAAGCCATTGACCATCCTTCGTGCAT
ATAATACTTCTGAGGCTGTGACAGGTTTATGCTGGCAACGGTCGAAGCCTGTCGTTGTTA
ATGAGAACAGTTCTTCTGAAGTTGCTCTTCTTGGGGGAACTAATGAAGAGTCTGTTCTTA
TGCCAGATCCCTTGCCTTCAGCAACACCTACAGGCCTTGGTTCTGGGGTGGCCACTACAA
GTCTTCTCTCTTTGACAGCAAACACAAGTGGCTATCTTTCGGCCTCAAATTCTTCTACTA
TGGAGGAAACACCATATAGAACTCGTCCGCTGACTGGTGGACCGTTATCAAAGCTACAGG
CTCCTCTTAGTAACTATAATCTGAAGGATGATATGGATGTATTTTCTCCACTTGTTGATG
TCCAGCCTTTCACACCATCTAGTGGCAACTGGTGGGATGAGCATGGAAGTGATGATGCAA
AAAAGGATGATAAACCAGGAGAAAAGAAATTTTCAACAACCAGGAAGTATTCGTATATGG
AAGGCAATGATGAGCCACATCCGATTGCAGATTGGCGGTCTACTGCAAGACAGGATAGCA
TCTCATCTGTGACTACTACATCCATGCCATCATGGAAGAGCGAACTGTCTGTATCTTCGC
CAGAGCCAGCAACTGGAAATGCATTACCAGACAGGCTTACTCAACGTCAACTGATCTCAC
GCTTTGGGTCTTCAGCCTTTCCAACTGGTGGCTTGGCATTTACAGCCTCACAAGATCCAG
CTTCAGCACCCAGTCACTCACTGAAGGGTTCTCTTACAAGTAACATTTTAATGAATCTAC
AAAACAAGGGCATCTTGAACAATGTATCCTCTTCCCTGGACGCATCCTCTCCTAATCTTC
AGAGTTCACTTCCCTCATCATATGTTTCAAAAACTATGCCATCTGTGATTCCTGATCAAC
TAGGAGCAGCACAATCCACTTCTTTGTGGAGACCCACAACATATACTGATAGAATGAGCT
CATCATCTGTTTTTAGTGATGGATTAGCTTCAGCATTTGGCTCACCCAAATCAAAGAAGA
CAGGAGCAGAAGCAAAAGATGAGTTGCTCAGTAACATTTTGTCAAGACAAACAGCAGCTG
GCTCTTCATCTGCAATCCCTTTAGCAAGCAATGGGGTAGTGCCACCACAACTGGCGAACA
CAGGTTCTTCATCTGATCAACTCGGCGCTTCTTCCTTCTCACTTCAGTATGTGCAGCGCA
TGCTTGAAGAATCTCTTGGGTCTGTCCAGAAGTCCATCCATGAGGATGTGAGAAATCTCC
ACATTGAACTTTTAAGACAGTTTCACATGCACGAGATGGAAATGTCAGGCGTGCTGAACT
TGGTCCTGGAAAAGGTGGAAGGCCTGACAAAAGAAGTGCAGCAACTAAGAAGGGAGAACC
AACAGCTCAGGCAGCAGCTTCTCTAATATGTGCCTTTGGGCGCCTCTCTGGCAATCTTAT
GCTGTGGAAGAGTGCAATTTGCTCAGGAGTCCTAGGTAGGCCCAAACCTATGTAGAGGCC
TGGCGATGGTTGATTCTCATATTGGTTGGAAGCTCGTGTTTGACTTTGACACGGTTTCCG
ATGTAGCTTTTGTTAATATAATTCCTTGATTAGGCTCAAAATACTCTCTTAACGATGGTA
TATGATATTTTGTGATGTGAGTAGATTATTACTCTTTGTCCAGTTTATAAGGCGTCTTCT
GAAATTGGCACAATTTCTTAAATTACACTTGATCACTTATTTATTTTATTCTCTTTGTTT
CTGAAT