Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005264_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:166202913:166214873:1 gene:Zm00001d005264 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGGAACCCCCGGCGGCGAAGGAGGCGCCGCCACTTCAGCCTGCGGCGGAGGAGGACGCG
ATGCTCTCTGCGACGGCGGCCATGGCGAAGGAAGCCGCTGTAGCGTTCCAGGGCTGCCGC
TACGCCGACTGTGCCGCAGTGCTCACGAGGCTGCTGGACAAGAAAGAGGGCGATCTCAAG
GTACACCATAACATGGCCATCACTGAATTCTTCTTGGATGATTGTCCTGATTCAAACAGG
CTGCTTAAAATTCTTGGTGATTTTAAGAGAAGAAGTGAAGAGCTTGCATGTGCATCTAGA
GAACAAGCTGATTCTGCTAATGGGGTAGGAAACAGCGCTCATTCAGGATCAAGAGGGAGT
GGTGCTTTACTACCTTTTTCCTCTACACATAATGCGTCAACTTATGGGGATGAATTTGAC
ACGACCATAATTACATTCAACATGGCTGTCATCCTATATCATCTTCATGACTATGAATCT
GCACTATCTGTTTTGGACCCACTGTACCGAAACATTGAACCAATGGACGAGCCAACTGCT
CTTCATGTATGCTTTCTATTATTGGATATTACATTAGCTTTGCAAGATGCAACAAAGGCT
GTGGATATAGTACAGTACTTGGAAAGGTCGTTTGGAGTAGCTAACACAATGAACCCGAAT
GAAAATGCAAGCATAGCTCAGCAGCAATTAGCTCAAGCGAAGCCTCCTGTGAAAATTAGC
ATGCCTCCAGATTCCGATTCAAATGCTTATGCTGGTGGATATGAGAACCTTTCGTCAGGA
ATTTTCCCAGATGAGCAAATAGAATTTGAATCTCTATGCTCTAGTTTTGATGGACATCAG
AATGTGGGCAGGCGTATCTTGAATGATTTCTCAAGGGCGTCTGCTGATCTTGCTGCTACT
GCTGCTGATTTGAAAGTTAGACTTCAGATTTACAAGGTCCGTCTTCTACTGCTCACTAGG
AACCTTAAGGTTGCGAAGCGAGAACTCAAAGTACTAATGAACATGGCACGTGGTAGGGAT
TCATCTACAGAGCTTCTCTTGAAATCTCAGCTGGAGTATGCCCGGGGGAATTATAGGAAG
GCTGTGAAGCTATTGAGCACACCAAATAATCGGACTGAACCAGCAATGCTAGCCATTTTC
CACAACAACATGGGATGTATACTCCACCAACAGAGATCGTATCACGCCTCTATATGGTGC
TTTAGCAAAGCGCTGAAATACAGCTTATCATTTCGTTCAGAGAAACCAATGAAGTTGTCT
ACATTATCACAAGACAAGTCTTGCCTTATTTCATACAACTGTGGTATCCAACATTTGATG
TGTGGGAAGCCTTTGTTAGCAGCTTCTTGTTTTCGTGAAGCCATGCCGCTCTTCTACAAG
CGACCCCTTTTCTGGCTCCGTTTTTCTGAGTGCAGCCTGCTAGCTCTAGAAAAGGGTCTC
CTGTGTGCAAATGGTGCTTCCTCATTCAACGATGAGATTGAAATCAATGTTGTGGGGTCA
GGACAATGGAGGCAGTTGATTGTCAACCCAGTGAACTCGAGAAGTAATTTAGATTCTGCA
GGTGTGACTTTAGGCGAACATAAAAATTTGGTTTCACTTGGATTTGCTAGACAGTGTCTA
CAAAATGCGCTGCTATTATTGGATGCTACTGAGAAGGAAAATTGGGTAATCGCATCTGAT
ACAGAGGATTGGGACCAAGGAACCGTACATGGATATAAAAGCTCAGGCCAGAAGAATACT
ACAAGTACAGATTCTAAAACACCTTCAGGCCCAACTCTAGCTAATGTAAATGGAGAACAA
AAGGGCACAAGCTTGAATGCTACCTTGCAGAGTTCTCTTGCTTTCTATGACGAGATCCGT
AGAAAAGAGTACATCAAAATCAGACAGGCTGTCCTGGCGAACTTGGCATTTGTTGAATTG
TGCCTTGATAATCCCTTGAAAACTTTGACGTATGCAAAGTCAGTACTGCAGGTGACAGAC
TGTTCCAGGATGTATGCGTTCCTCAGCCATGTATACGCAGCCGAAGCTCTATGTACTTTG
AACAGAACAGAGGATGCCGCCGAGAATCTATCAGTTTATATAAGAGATGGTAATCATGTC
GAGTTGCCTTATAGTGTGGAGAATTCTGAAAAGGCCTTGGTTGAGAAAGACAGTGATGGT
GAAGACTTGGTTGCTCCTGCAGTGACAAAACTCGCCACAGAAGAACCTGAGCAGCTCAGG
CCGGAGGAGGCCCGTGGTGTCCTGTATATCAACCTTGGCATGATTGCTGCAAGGCAGGGA
GAAGTTGAAAAAGCCAACTACATGGTGAGCCGTGGCCTGGCGATGTTGCCCAACAACCCC
CGGGCAGTGCTAGCATCGGTTTACGTAGACCTTTTGCAAGGGAAGTCCCAGGAAGCTGTC
GTGAAGTTGAGACGGTGTAGGAATGTGAGATTTAGACCCGCTAGCATAGCAGCCAGCAGT
CAGCAGTCGAGCTTAGAAAAGCCTCCCCTTTCATGA

Peptide Sequence

PEP ID

Zm00001d005264_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:166202913:166214873:1 gene:Zm00001d005264 transcript:Zm00001d005264_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MEPPAAKEAPPLQPAAEEDAMLSATAAMAKEAAVAFQGCRYADCAAVLTRLLDKKEGDLK
VHHNMAITEFFLDDCPDSNRLLKILGDFKRRSEELACASREQADSANGVGNSAHSGSRGS
GALLPFSSTHNASTYGDEFDTTIITFNMAVILYHLHDYESALSVLDPLYRNIEPMDEPTA
LHVCFLLLDITLALQDATKAVDIVQYLERSFGVANTMNPNENASIAQQQLAQAKPPVKIS
MPPDSDSNAYAGGYENLSSGIFPDEQIEFESLCSSFDGHQNVGRRILNDFSRASADLAAT
AADLKVRLQIYKVRLLLLTRNLKVAKRELKVLMNMARGRDSSTELLLKSQLEYARGNYRK
AVKLLSTPNNRTEPAMLAIFHNNMGCILHQQRSYHASIWCFSKALKYSLSFRSEKPMKLS
TLSQDKSCLISYNCGIQHLMCGKPLLAASCFREAMPLFYKRPLFWLRFSECSLLALEKGL
LCANGASSFNDEIEINVVGSGQWRQLIVNPVNSRSNLDSAGVTLGEHKNLVSLGFARQCL
QNALLLLDATEKENWVIASDTEDWDQGTVHGYKSSGQKNTTSTDSKTPSGPTLANVNGEQ
KGTSLNATLQSSLAFYDEIRRKEYIKIRQAVLANLAFVELCLDNPLKTLTYAKSVLQVTD
CSRMYAFLSHVYAAEALCTLNRTEDAAENLSVYIRDGNHVELPYSVENSEKALVEKDSDG
EDLVAPAVTKLATEEPEQLRPEEARGVLYINLGMIAARQGEVEKANYMVSRGLAMLPNNP
RAVLASVYVDLLQGKSQEAVVKLRRCRNVRFRPASIAASSQQSSLEKPPLS

Transcript Sequence

Transcript ID

Zm00001d005264_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:166202913:166214873:1 gene:Zm00001d005264 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

AAATTTGTAAAACACGTGAAATCAGGAATCAGGAAAGGAAAGGATTCCCCTCGTCGTCGC
TTCTTCCAAACCCTAGCGGCCTAGCCTGCCTCCTACCTCGCCCGCCGACCTATCTCTGCC
AGTCCTATTCCCCGCGGCAGCGCGGGATCTCCTCGCTCCCGTCGCTCCCTGCACCTACGG
TACAACCGCTCCATCCAAACGAGATCCAGCGGATGGAACCCCCGGCGGCGAAGGAGGCGC
CGCCACTTCAGCCTGCGGCGGAGGAGGACGCGATGCTCTCTGCGACGGCGGCCATGGCGA
AGGAAGCCGCTGTAGCGTTCCAGGGCTGCCGCTACGCCGACTGTGCCGCAGTGCTCACGA
GGCTGCTGGACAAGAAAGAGGGCGATCTCAAGGTACACCATAACATGGCCATCACTGAAT
TCTTCTTGGATGATTGTCCTGATTCAAACAGGCTGCTTAAAATTCTTGGTGATTTTAAGA
GAAGAAGTGAAGAGCTTGCATGTGCATCTAGAGAACAAGCTGATTCTGCTAATGGGGTAG
GAAACAGCGCTCATTCAGGATCAAGAGGGAGTGGTGCTTTACTACCTTTTTCCTCTACAC
ATAATGCGTCAACTTATGGGGATGAATTTGACACGACCATAATTACATTCAACATGGCTG
TCATCCTATATCATCTTCATGACTATGAATCTGCACTATCTGTTTTGGACCCACTGTACC
GAAACATTGAACCAATGGACGAGCCAACTGCTCTTCATGTATGCTTTCTATTATTGGATA
TTACATTAGCTTTGCAAGATGCAACAAAGGCTGTGGATATAGTACAGTACTTGGAAAGGT
CGTTTGGAGTAGCTAACACAATGAACCCGAATGAAAATGCAAGCATAGCTCAGCAGCAAT
TAGCTCAAGCGAAGCCTCCTGTGAAAATTAGCATGCCTCCAGATTCCGATTCAAATGCTT
ATGCTGGTGGATATGAGAACCTTTCGTCAGGAATTTTCCCAGATGAGCAAATAGAATTTG
AATCTCTATGCTCTAGTTTTGATGGACATCAGAATGTGGGCAGGCGTATCTTGAATGATT
TCTCAAGGGCGTCTGCTGATCTTGCTGCTACTGCTGCTGATTTGAAAGTTAGACTTCAGA
TTTACAAGGTCCGTCTTCTACTGCTCACTAGGAACCTTAAGGTTGCGAAGCGAGAACTCA
AAGTACTAATGAACATGGCACGTGGTAGGGATTCATCTACAGAGCTTCTCTTGAAATCTC
AGCTGGAGTATGCCCGGGGGAATTATAGGAAGGCTGTGAAGCTATTGAGCACACCAAATA
ATCGGACTGAACCAGCAATGCTAGCCATTTTCCACAACAACATGGGATGTATACTCCACC
AACAGAGATCGTATCACGCCTCTATATGGTGCTTTAGCAAAGCGCTGAAATACAGCTTAT
CATTTCGTTCAGAGAAACCAATGAAGTTGTCTACATTATCACAAGACAAGTCTTGCCTTA
TTTCATACAACTGTGGTATCCAACATTTGATGTGTGGGAAGCCTTTGTTAGCAGCTTCTT
GTTTTCGTGAAGCCATGCCGCTCTTCTACAAGCGACCCCTTTTCTGGCTCCGTTTTTCTG
AGTGCAGCCTGCTAGCTCTAGAAAAGGGTCTCCTGTGTGCAAATGGTGCTTCCTCATTCA
ACGATGAGATTGAAATCAATGTTGTGGGGTCAGGACAATGGAGGCAGTTGATTGTCAACC
CAGTGAACTCGAGAAGTAATTTAGATTCTGCAGGTGTGACTTTAGGCGAACATAAAAATT
TGGTTTCACTTGGATTTGCTAGACAGTGTCTACAAAATGCGCTGCTATTATTGGATGCTA
CTGAGAAGGAAAATTGGGTAATCGCATCTGATACAGAGGATTGGGACCAAGGAACCGTAC
ATGGATATAAAAGCTCAGGCCAGAAGAATACTACAAGTACAGATTCTAAAACACCTTCAG
GCCCAACTCTAGCTAATGTAAATGGAGAACAAAAGGGCACAAGCTTGAATGCTACCTTGC
AGAGTTCTCTTGCTTTCTATGACGAGATCCGTAGAAAAGAGTACATCAAAATCAGACAGG
CTGTCCTGGCGAACTTGGCATTTGTTGAATTGTGCCTTGATAATCCCTTGAAAACTTTGA
CGTATGCAAAGTCAGTACTGCAGGTGACAGACTGTTCCAGGATGTATGCGTTCCTCAGCC
ATGTATACGCAGCCGAAGCTCTATGTACTTTGAACAGAACAGAGGATGCCGCCGAGAATC
TATCAGTTTATATAAGAGATGGTAATCATGTCGAGTTGCCTTATAGTGTGGAGAATTCTG
AAAAGGCCTTGGTTGAGAAAGACAGTGATGGTGAAGACTTGGTTGCTCCTGCAGTGACAA
AACTCGCCACAGAAGAACCTGAGCAGCTCAGGCCGGAGGAGGCCCGTGGTGTCCTGTATA
TCAACCTTGGCATGATTGCTGCAAGGCAGGGAGAAGTTGAAAAAGCCAACTACATGGTGA
GCCGTGGCCTGGCGATGTTGCCCAACAACCCCCGGGCAGTGCTAGCATCGGTTTACGTAG
ACCTTTTGCAAGGGAAGTCCCAGGAAGCTGTCGTGAAGTTGAGACGGTGTAGGAATGTGA
GATTTAGACCCGCTAGCATAGCAGCCAGCAGTCAGCAGTCGAGCTTAGAAAAGCCTCCCC
TTTCATGATTTCTGTAGTTTACAATTACCGTTATAATCTTTTTTGGACCCTGACCCCAAT
GTGGATGATCAAAGATGGTAATGCTTCTCCTGTGTAACATATATAAGAAATGAACTCTAA
CTCCCCTTCTAGCTCCCTCCCAGATTCAGGGGTGGAATGTGTTGGAACTGTACCGTTTTA
ATTTGCCCTCTTTGGACTGAAGAGAGCCAAGTGATCAAAATAGTTTCCTATGTTTATTCA
AGAATTTGGAAAATAATG