Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d005241_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:2:165407164:165415168:-1 gene:Zm00001d005241 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 33A
Sequence	ATGGAGTATAGACTCTACCTTGAGCTCTTGAAAAGACATGGGTTCAACTTCCATCATCAG ATGAAAGCAGCAAATTTCAGAAAGATCATGGATATAATAGAGCGGAATCTTAGACTTTCC AAGATATTTGGCATCTCTACATGTGAACCAGGGGTTTTTGTTGTGCATTTCATTCTTTGT ATTATATGGCAGTTGATTGATGTTGTTCTGGATGATGAGGGCCTACTAGAGTTAACTCCA GAGAAGAATGCTCAATGGCCAACAAGGCCTGAAGATGTGAGCACATTTGAAGGAACTTTT ACTGAACAAAGAACTGAGAAGATCAAAAAGTTACAGAAGATGAACACTGTAACAACTATG GAGCTCATTGAGCATCTTCTTCGCGATAAAGTAATTACTCGTATCCTATCATTGGCACGC GAAAACATGCAATCTCACTGGGGGGCATTTACTAACCGGTTGCACTTGCTTGCAACAAAC TCATCTACCTTGCAAAATTCAGCAATATCCTTGGAACCATTTCAGCATTTGATTCTAGGT GATTGTGATGCATATGGTGAAACTAAACATAATGTGCATAAAAGATTCCACCAAATAGTG GCTTCTAACCCTCTATCTTCACCAAATGGACGATGTCTTGGTGCTAGCTATTCTGCACTA TGGATTCCTATTGATATGTATCTTGAGGATTGTCTCGATTGTTCAATTGCTGCAACAAAT TCTATTGAGATTTTAAGTGGTTTGGTCAAGGCTCTTCAAGCAGTCAATAGGTCGACTTGG CATGATGCTTTCTTGGCCCTCTGGGTAGCTTCACTTCGCCTTGTACAAAGAGAAAGAGAA CCAATTGAAGGTCCTGTACCTCACCTAGACACCCGGCTGTGCATGTTGTTGTCTATCACA ACACTTGCGATTGCTGACATAATTATGGAAGCAGATTCACTTTGCAATGAAACAGAACTC AACAGTCATGTGAATGAGAAGAAAGCAATTGGTAATCTACGCAATGAATTGATGCTAAGC TTACAGATACTTGGTGATTATGAAAGCTTGCTGGTTCCTCCTTCATGTGTCATCCCAGCA GCTAATCAAGCTGCTACTAAAGCTGCAATGTTCATTTCTGGAATCAGTATAAACAATGGC TACATGGATAATGTCAATGGGATGAACTATACTGGAAATATGCGACATTTGATTGTGGAG TCATGTATCTCAAGGCAGTTGCTGGATACATCAGCTTACTATTGGCCTGGTTATATCATG AATCATGCCAACTCTACATCTCATACACTCCCTAGTCAACTTGCTGGTTGGTCATCCTTC ATGAAGGGTGCACCACTGACTCAACCACTGGTTAATATGTTGGTATCAACTCCTGCTTCC AGCTTGGCAGAGGTCGACAAGTTATTTGAAGTTGCAGTTGATGGGTCAGATGACGACAGC ATTTCAGCTGCCACTGTTTTATGTGGAGCCACCCTTTTACGAGGTTGGAATTTTCAGGAG CATACAGTTCGGTTAGTTGTTAAACTGCTCTCACCATCTGATCCAATTGATAATTCTGGA AGAGAGAGCCAATTGATAAAGCTTGGTCCAATGCTCAATGTTATTCTTTCAGGAATATCG GCCGTGGACTATGCTCCAATCTTCTCGTTCCATGGCCTGATTCCAGAGCTGGCTGCTTCT CTTATGGCAATCTGTGAAGTATTTGGGTGTCTTTCTCCAAGTGTTTCCTGGACACTGAGA ACTGGAGAGGAAATATCTGCTCACACAGTCTTCTCGAATGCATTTATTCTTCTGTTGAGA CTTTGGAAGTTTAACCATCCACCACTTGAGTATTGCATAATGGGAGATGGTGCTCCAGTT GGCTCGCAGCTAACTCCTGAGTATCTTCTGCTGTTACGGAATTCCCAGGTCCTATCTTCC AGCAGTTTGTCAAAACAACGAAACGGACAAAGGCAATCACAAGTATCAACTTCACACCCA TCATCTGGAAATCCTATTTTTATGGACTCGTTTCCAAAGTTGAAGTTATGGTACCAGCAG CACCAAGCTTGTCTGGCCTCAACTCTCTCTGGACTTGCTCATGGGACACCTGTACGTAAC AATGTGGATAGCCTTCTTAATCAGATGTTCAGAAAAGCTAATAAAGGAGGCACATCAATA GGTTCTTTATCTGGAAGTAGCAGCATAAGTAATTCTTCCAGTCCTGGTGGGGATGATTCA CATCTTTGGCCTCAGTTGCCAGCTTGGGAGATACTGGAGGCTGTTCCTTTTGTGGTTGAT GCTGCTCTTACTGCTTGTTCCCATGGAAGACTATTTCCACGTGAACTGGCCACAGGCCTG AAGGATCTGGCTGATTTCCTCCCTGCATCTCTTGCTACAATAGTAAGCTACTTTTCCGCT GAGGTGACGCGGGGTGTCTGGAAGCCTGCATCCATGAATGGATCAGATTGGCCTAGCCCC TCTGTGAACCTATCCATGGTTGATGAGCACATCAAGAAAATCGTAGCTGCTACCGGTGTT GATGTTCCAAAGCTAGTTACAGGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCT GCTTTCGTGAGCCTCACAATCACATACAAGCTTGACAAGGCATCAGAGTGTTTCCTCAAC CTTGCTGGTCCAGCTCTAGAGAACCTGGCTGCAAGCTGCCCTTGGCCAAGCATGGCAATC GTTGCAGCACTGTGGACCCAGAAGGTGAAGCGATGGAGCGATTTCCTAATATTTTCAGCT TCGCGCACTGTGTTCCACCACAACAACGATGCAGTCGTCCAGCTCCTCCGAAGTTGCTTC GCCGCTACCCTTGGCATGTCTTCGACATCAGTATGCAGCTGTGGAGGTGTCGCCAGCCTT CTGGGCCACGGGTACTGCCCTGGTGGTTTCTCGCCAGTTGCGCCAGGAATCCTCTACCTC CGGATATTCCGGTGCATCAAGGACTGCTCCATACTCGCCGAGGACATACTCTCCCTTCTG ATGCTCTCAGTGAAGGATATCGCAGAAACAACTGTGCCCAGACAAAGGCCAGACAAGCTA AAGAAGACCAAGTACGGGATGAGGCATGGCCAGGTATCTCTTTCCGCTGCAATGACGCAG GTGAAGGTGGCGGCATCTCTGGGGGCGACACTCGTCTGGCTATCCGGCGGCACGGCTCTC GTCCAGTCCCTGATCCAGGAGATGCTGCCGTCTTGGTTCCTGTCCGCGCAGAACCTGGAT CAGGGCGGGGCTAGCGGAGGCGTGGTGTACAAGCTAGGCGGGCACGCGTTGGCCTACTTC GCGGTGTACTCGGGGATGTTGGCCTGGGGCATCGACCAGACGCCCGTGTCCCGGCGCCGC GAGAGGGTCATGCGGTCGCACCTGGGGTTCCTGGCGAGCGCGCTGGCCGGGAAGATCTTC CTCGGCTGCGACCTCTCCCTGTGGCGAGCCTACGTCTCTGGGTTCCTAGGACTGGTGGTT GAATGCACCCCGTGCTGGGTGCAGGAGGTGGACCTGAGGGTGCTCAAGCGCCTGAGCAGC GGCCTCCGGCACTGGGGCGAGGATGAGCTCGCGGTGGCGCTCCTCCGCCGCGCCGGTCCC GAGGCTATGGGCACAGCCGCGGAGATGATCTTGGGCAGGGAGTTGTGA

Peptide Sequence

PEP ID	Zm00001d005241_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:2:165407164:165415168:-1 gene:Zm00001d005241 transcript:Zm00001d005241_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 33A
Sequence	MEYRLYLELLKRHGFNFHHQMKAANFRKIMDIIERNLRLSKIFGISTCEPGVFVVHFILC IIWQLIDVVLDDEGLLELTPEKNAQWPTRPEDVSTFEGTFTEQRTEKIKKLQKMNTVTTM ELIEHLLRDKVITRILSLARENMQSHWGAFTNRLHLLATNSSTLQNSAISLEPFQHLILG DCDAYGETKHNVHKRFHQIVASNPLSSPNGRCLGASYSALWIPIDMYLEDCLDCSIAATN SIEILSGLVKALQAVNRSTWHDAFLALWVASLRLVQREREPIEGPVPHLDTRLCMLLSIT TLAIADIIMEADSLCNETELNSHVNEKKAIGNLRNELMLSLQILGDYESLLVPPSCVIPA ANQAATKAAMFISGISINNGYMDNVNGMNYTGNMRHLIVESCISRQLLDTSAYYWPGYIM NHANSTSHTLPSQLAGWSSFMKGAPLTQPLVNMLVSTPASSLAEVDKLFEVAVDGSDDDS ISAATVLCGATLLRGWNFQEHTVRLVVKLLSPSDPIDNSGRESQLIKLGPMLNVILSGIS AVDYAPIFSFHGLIPELAASLMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLR LWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLSKQRNGQRQSQVSTSHP SSGNPIFMDSFPKLKLWYQQHQACLASTLSGLAHGTPVRNNVDSLLNQMFRKANKGGTSI GSLSGSSSISNSSSPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGL KDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVDEHIKKIVAATGV DVPKLVTGGSSSGTLPLPLAAFVSLTITYKLDKASECFLNLAGPALENLAASCPWPSMAI VAALWTQKVKRWSDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCSCGGVASL LGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRQRPDKL KKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSAQNLD QGGASGGVVYKLGGHALAYFAVYSGMLAWGIDQTPVSRRRERVMRSHLGFLASALAGKIF LGCDLSLWRAYVSGFLGLVVECTPCWVQEVDLRVLKRLSSGLRHWGEDELAVALLRRAGP EAMGTAAEMILGREL

Transcript Sequence

Transcript ID	Zm00001d005241_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:165407164:165415168:-1 gene:Zm00001d005241 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 33A
Sequence	GGGCTGCCCCGGCGGCCGCCGCTTGGAAGTACGCGGAGGCCGCGCTCGCGGCGCGGCTTG CGTCCCCGGCGCTCCTCCTCGCGCTCCTCTCCACCAGGGTAATTCCTCACCGGCTTTCCA GGCCAATGGAGTATAGACTCTACCTTGAGCTCTTGAAAAGACATGGGTTCAACTTCCATC ATCAGATGAAAGCAGCAAATTTCAGAAAGATCATGGATATAATAGAGCGGAATCTTAGAC TTTCCAAGATATTTGGCATCTCTACATGTGAACCAGGGGTTTTTGTTGTGCATTTCATTC TTTGTATTATATGGCAGTTGATTGATGTTGTTCTGGATGATGAGGGCCTACTAGAGTTAA CTCCAGAGAAGAATGCTCAATGGCCAACAAGGCCTGAAGATGTGAGCACATTTGAAGGAA CTTTTACTGAACAAAGAACTGAGAAGATCAAAAAGTTACAGAAGATGAACACTGTAACAA CTATGGAGCTCATTGAGCATCTTCTTCGCGATAAAGTAATTACTCGTATCCTATCATTGG CACGCGAAAACATGCAATCTCACTGGGGGGCATTTACTAACCGGTTGCACTTGCTTGCAA CAAACTCATCTACCTTGCAAAATTCAGCAATATCCTTGGAACCATTTCAGCATTTGATTC TAGGTGATTGTGATGCATATGGTGAAACTAAACATAATGTGCATAAAAGATTCCACCAAA TAGTGGCTTCTAACCCTCTATCTTCACCAAATGGACGATGTCTTGGTGCTAGCTATTCTG CACTATGGATTCCTATTGATATGTATCTTGAGGATTGTCTCGATTGTTCAATTGCTGCAA CAAATTCTATTGAGATTTTAAGTGGTTTGGTCAAGGCTCTTCAAGCAGTCAATAGGTCGA CTTGGCATGATGCTTTCTTGGCCCTCTGGGTAGCTTCACTTCGCCTTGTACAAAGAGAAA GAGAACCAATTGAAGGTCCTGTACCTCACCTAGACACCCGGCTGTGCATGTTGTTGTCTA TCACAACACTTGCGATTGCTGACATAATTATGGAAGCAGATTCACTTTGCAATGAAACAG AACTCAACAGTCATGTGAATGAGAAGAAAGCAATTGGTAATCTACGCAATGAATTGATGC TAAGCTTACAGATACTTGGTGATTATGAAAGCTTGCTGGTTCCTCCTTCATGTGTCATCC CAGCAGCTAATCAAGCTGCTACTAAAGCTGCAATGTTCATTTCTGGAATCAGTATAAACA ATGGCTACATGGATAATGTCAATGGGATGAACTATACTGGAAATATGCGACATTTGATTG TGGAGTCATGTATCTCAAGGCAGTTGCTGGATACATCAGCTTACTATTGGCCTGGTTATA TCATGAATCATGCCAACTCTACATCTCATACACTCCCTAGTCAACTTGCTGGTTGGTCAT CCTTCATGAAGGGTGCACCACTGACTCAACCACTGGTTAATATGTTGGTATCAACTCCTG CTTCCAGCTTGGCAGAGGTCGACAAGTTATTTGAAGTTGCAGTTGATGGGTCAGATGACG ACAGCATTTCAGCTGCCACTGTTTTATGTGGAGCCACCCTTTTACGAGGTTGGAATTTTC AGGAGCATACAGTTCGGTTAGTTGTTAAACTGCTCTCACCATCTGATCCAATTGATAATT CTGGAAGAGAGAGCCAATTGATAAAGCTTGGTCCAATGCTCAATGTTATTCTTTCAGGAA TATCGGCCGTGGACTATGCTCCAATCTTCTCGTTCCATGGCCTGATTCCAGAGCTGGCTG CTTCTCTTATGGCAATCTGTGAAGTATTTGGGTGTCTTTCTCCAAGTGTTTCCTGGACAC TGAGAACTGGAGAGGAAATATCTGCTCACACAGTCTTCTCGAATGCATTTATTCTTCTGT TGAGACTTTGGAAGTTTAACCATCCACCACTTGAGTATTGCATAATGGGAGATGGTGCTC CAGTTGGCTCGCAGCTAACTCCTGAGTATCTTCTGCTGTTACGGAATTCCCAGGTCCTAT CTTCCAGCAGTTTGTCAAAACAACGAAACGGACAAAGGCAATCACAAGTATCAACTTCAC ACCCATCATCTGGAAATCCTATTTTTATGGACTCGTTTCCAAAGTTGAAGTTATGGTACC AGCAGCACCAAGCTTGTCTGGCCTCAACTCTCTCTGGACTTGCTCATGGGACACCTGTAC GTAACAATGTGGATAGCCTTCTTAATCAGATGTTCAGAAAAGCTAATAAAGGAGGCACAT CAATAGGTTCTTTATCTGGAAGTAGCAGCATAAGTAATTCTTCCAGTCCTGGTGGGGATG ATTCACATCTTTGGCCTCAGTTGCCAGCTTGGGAGATACTGGAGGCTGTTCCTTTTGTGG TTGATGCTGCTCTTACTGCTTGTTCCCATGGAAGACTATTTCCACGTGAACTGGCCACAG GCCTGAAGGATCTGGCTGATTTCCTCCCTGCATCTCTTGCTACAATAGTAAGCTACTTTT CCGCTGAGGTGACGCGGGGTGTCTGGAAGCCTGCATCCATGAATGGATCAGATTGGCCTA GCCCCTCTGTGAACCTATCCATGGTTGATGAGCACATCAAGAAAATCGTAGCTGCTACCG GTGTTGATGTTCCAAAGCTAGTTACAGGAGGAAGCTCTTCAGGTACACTTCCGTTACCAT TGGCTGCTTTCGTGAGCCTCACAATCACATACAAGCTTGACAAGGCATCAGAGTGTTTCC TCAACCTTGCTGGTCCAGCTCTAGAGAACCTGGCTGCAAGCTGCCCTTGGCCAAGCATGG CAATCGTTGCAGCACTGTGGACCCAGAAGGTGAAGCGATGGAGCGATTTCCTAATATTTT CAGCTTCGCGCACTGTGTTCCACCACAACAACGATGCAGTCGTCCAGCTCCTCCGAAGTT GCTTCGCCGCTACCCTTGGCATGTCTTCGACATCAGTATGCAGCTGTGGAGGTGTCGCCA GCCTTCTGGGCCACGGGTACTGCCCTGGTGGTTTCTCGCCAGTTGCGCCAGGAATCCTCT ACCTCCGGATATTCCGGTGCATCAAGGACTGCTCCATACTCGCCGAGGACATACTCTCCC TTCTGATGCTCTCAGTGAAGGATATCGCAGAAACAACTGTGCCCAGACAAAGGCCAGACA AGCTAAAGAAGACCAAGTACGGGATGAGGCATGGCCAGGTATCTCTTTCCGCTGCAATGA CGCAGGTGAAGGTGGCGGCATCTCTGGGGGCGACACTCGTCTGGCTATCCGGCGGCACGG CTCTCGTCCAGTCCCTGATCCAGGAGATGCTGCCGTCTTGGTTCCTGTCCGCGCAGAACC TGGATCAGGGCGGGGCTAGCGGAGGCGTGGTGTACAAGCTAGGCGGGCACGCGTTGGCCT ACTTCGCGGTGTACTCGGGGATGTTGGCCTGGGGCATCGACCAGACGCCCGTGTCCCGGC GCCGCGAGAGGGTCATGCGGTCGCACCTGGGGTTCCTGGCGAGCGCGCTGGCCGGGAAGA TCTTCCTCGGCTGCGACCTCTCCCTGTGGCGAGCCTACGTCTCTGGGTTCCTAGGACTGG TGGTTGAATGCACCCCGTGCTGGGTGCAGGAGGTGGACCTGAGGGTGCTCAAGCGCCTGA GCAGCGGCCTCCGGCACTGGGGCGAGGATGAGCTCGCGGTGGCGCTCCTCCGCCGCGCCG GTCCCGAGGCTATGGGCACAGCCGCGGAGATGATCTTGGGCAGGGAGTTGTGACGCCGAT GCGCGCGCGCGCCGCGCGGCGTATGCTGTTCGTCAGCGATGATGCAGTTTTTGTATATAA TCGGTTAAAATCTGGCCATGTGTATGCTCACGGGTAATATTTGAATGATTTTATCTGTAA AACTGTTAAGACGTTTTGATCTCTC