Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005154_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:161423330:161427064:1 gene:Zm00001d005154 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence

ATGGGTGCTGCTGGCAATGTCAGCAATCCGTATTGTTCGCATGTCAGAGAAGGAGCGGAC
AAAAGTAGTGACCCAAGATTAGGTCCAGATTTTACTGCAGCTGAAGTGCAAGCGGATCCT
GTCAATGGTGATTTATCTTTGAGTCATGTGAAACTGGAGCAGTCATGGTCTAGTGTACAA
GCATTCATTGCTGAGCATGTGACCCTTAAGGATATTGATTTGGATTGGAGCAAGGAGGTT
GTTGGGCTGGATGGTTTCAGATATGTAGGCTGCAATGACCTAAAGGATGTTGCACTGAAT
AGCTTGCACACGTTCTTCAAGACTGCAGTTGATATGTTATCCTGTGAAGGGAACACCGAG
GATGCTGTTGTAAATGCTGTTGTGCACTCTGCACTCTGTTATCAGTTTGATGGACCTATA
ACTAAGATCGCTGAACATGCACGCACATTGCTACAGAGTGGCAATCATTTGGTTGATCAT
TCCTACAGTGAAAATGTTGACACAGTTCTGCACATGCTGGGTTTGTATTTCCTTTGCAAT
GCATCAAGGTTGCTTAAGAAATACTGTCCATTTTTCACCTTGGGAGATGCATTGTGGTGC
ATTCTGCTGTGTGACATGGATATATCTATAGCTCGTGCAGCTTTTTTTCCCATGAGTGGT
TATGGGAATGGACAATCAGAAGGCTATGCTCATAGTCAGAGTGACTTATGTGAAGATCAT
GATATTGTAAATGAGTTATCAGAAGAATATAGTTGCAGTGCCACAGAATCGCCTGCACAA
TTCGAGCCACCTGAATATGAAGCAGTACAAATGATGTGGAGCAATTTTCTGACAAATTAT
ATAGTTTCATTTCAAAAGTTTGAAAGGAAAAACCAAGATGCTCCTTTTGCTCAAGATGAA
AATTCTCCTTCAGTGCCTAGATCTGTTAACAAAAAGGAAACCAAAGGCAACCGTAGTAAG
ACAAATTCCATGAAATCCCAGAAAGACTCCGGGAAGGGTTTGGTAGTTTTCAAGAACATC
CCACAAGTCAAGGGTATTATAAGTAGAACATCTTTACGAATGATAAAAGAGAACAAAACA
TTAACTGCATTCCTTGCATCTGCACAGAGCACTTTGGCAGGCACTTCAGAGGTAGCCAGT
GAAAAGGACTCACAAACACCCATGTTAGTTCCAACTAAACCACATCCTGGACCTTTCTCA
GTCAAAAAACGATATTCTCCAGCAGTGGTTTCAATTGGATCACTTTCTTCTCCTAGCTGT
TCCTCCAATTCATCATCCAGTGCAAAGGGCAAGGCAGAGCCTAGGCAGTGGATGGAACCT
GATGTTGTACACTTCTCTCTCCCAAATACTCCTGCAGAGGGCTTTGAATTTCATTTCTCA
CGTGAAGGCTTGCAGACCACTTGGATTCCAAAAGATAGAAAAGAGGAGCTGGCTCTAAAA
CTAGTCCAGCGCTTGGGTGAGTTAAAGCTGGAGGTGCAAGTCTGGACAGATTGGGCTAAT
GAGAGGGTGATGCAGTCAACAAATAGGCTGGTAAATGAAAGGACTGTACTTTTATCTCTT
AAAAAGGATAAGGCAGACTTTGAAGAGCCTGATGTGTTTACAAGAAAGAAGCTTGAGGAG
ACAAAAAGGGCAATAGACAGTACTTCTTGTGAGCTTGATCGTGTTAATTCCCTTGTCCAG
GAGCTTACAGATAAGGTTTCACTTTGTAGGCGTGAGAAGAAAGCTGTCCAGCGACAAGGA
GAGCAATATGACGCAAGCTTGGCTAGCATTTTAAGCAAGAAAACTGTGTCTATGAACAGA
CTGAAGTCCATGGAGACAGAGAAGATCCTTTTGCAGGAGGAGATTGCTGCTGAAAGGAGT
AAACTATCCAAGCTTCTGCAAAGTCTTGAGCAAGCTAGAAGACATGAAGTCGGATTAAAG
AAAAGGTGCCAGGAAGGAGAGAAGATGATAGATGCACTTACAAAGAAGGTTAACTTTGAA
AGAACTGAGCTCGAGAGGATTGAGACATCAGGAAGAGCAAGGTCTAGTTGTCTGTTGCTG
GAAGCGCGCAACCACCAGGAATGGCTGCAGACCAATATCAAGAATCTGAGACAGCAGGTA
GGTGAGATGTCTAGCAGAAGCAAGCCTCTGAGCGTCGCAAACTTCATGCGCCACCCAGGT
TTTGTGATCGATGATTCTGTACAGCGGGAGCAGGAATGTGCCATGTGCTTGGAAGAGGAG
GTTTCGGTGGTTTTCCTGCCATGCAGGCATCAGATTATTTGTGCAGGCTGCAACCAACGC
CATGGAGATGGTGGCATGACCGAATGCCCATCCTGCAGATCTCCCATAGAGCGTAGGATC
TGTGCTCGCTTTACCGACAGTTAG

Peptide Sequence

PEP ID

Zm00001d005154_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:161423330:161427064:1 gene:Zm00001d005154 transcript:Zm00001d005154_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence

MGAAGNVSNPYCSHVREGADKSSDPRLGPDFTAAEVQADPVNGDLSLSHVKLEQSWSSVQ
AFIAEHVTLKDIDLDWSKEVVGLDGFRYVGCNDLKDVALNSLHTFFKTAVDMLSCEGNTE
DAVVNAVVHSALCYQFDGPITKIAEHARTLLQSGNHLVDHSYSENVDTVLHMLGLYFLCN
ASRLLKKYCPFFTLGDALWCILLCDMDISIARAAFFPMSGYGNGQSEGYAHSQSDLCEDH
DIVNELSEEYSCSATESPAQFEPPEYEAVQMMWSNFLTNYIVSFQKFERKNQDAPFAQDE
NSPSVPRSVNKKETKGNRSKTNSMKSQKDSGKGLVVFKNIPQVKGIISRTSLRMIKENKT
LTAFLASAQSTLAGTSEVASEKDSQTPMLVPTKPHPGPFSVKKRYSPAVVSIGSLSSPSC
SSNSSSSAKGKAEPRQWMEPDVVHFSLPNTPAEGFEFHFSREGLQTTWIPKDRKEELALK
LVQRLGELKLEVQVWTDWANERVMQSTNRLVNERTVLLSLKKDKADFEEPDVFTRKKLEE
TKRAIDSTSCELDRVNSLVQELTDKVSLCRREKKAVQRQGEQYDASLASILSKKTVSMNR
LKSMETEKILLQEEIAAERSKLSKLLQSLEQARRHEVGLKKRCQEGEKMIDALTKKVNFE
RTELERIETSGRARSSCLLLEARNHQEWLQTNIKNLRQQVGEMSSRSKPLSVANFMRHPG
FVIDDSVQREQECAMCLEEEVSVVFLPCRHQIICAGCNQRHGDGGMTECPSCRSPIERRI
CARFTDS

Transcript Sequence

Transcript ID

Zm00001d005154_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:161423330:161427064:1 gene:Zm00001d005154 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence

TTGGTTTTTTCAGATAAGCATACCCTGGCAATGGGTGCTGCTGGCAATGTCAGCAATCCG
TATTGTTCGCATGTCAGAGAAGGAGCGGACAAAAGTAGTGACCCAAGATTAGGTCCAGAT
TTTACTGCAGCTGAAGTGCAAGCGGATCCTGTCAATGGTGATTTATCTTTGAGTCATGTG
AAACTGGAGCAGTCATGGTCTAGTGTACAAGCATTCATTGCTGAGCATGTGACCCTTAAG
GATATTGATTTGGATTGGAGCAAGGAGGTTGTTGGGCTGGATGGTTTCAGATATGTAGGC
TGCAATGACCTAAAGGATGTTGCACTGAATAGCTTGCACACGTTCTTCAAGACTGCAGTT
GATATGTTATCCTGTGAAGGGAACACCGAGGATGCTGTTGTAAATGCTGTTGTGCACTCT
GCACTCTGTTATCAGTTTGATGGACCTATAACTAAGATCGCTGAACATGCACGCACATTG
CTACAGAGTGGCAATCATTTGGTTGATCATTCCTACAGTGAAAATGTTGACACAGTTCTG
CACATGCTGGGTTTGTATTTCCTTTGCAATGCATCAAGGTTGCTTAAGAAATACTGTCCA
TTTTTCACCTTGGGAGATGCATTGTGGTGCATTCTGCTGTGTGACATGGATATATCTATA
GCTCGTGCAGCTTTTTTTCCCATGAGTGGTTATGGGAATGGACAATCAGAAGGCTATGCT
CATAGTCAGAGTGACTTATGTGAAGATCATGATATTGTAAATGAGTTATCAGAAGAATAT
AGTTGCAGTGCCACAGAATCGCCTGCACAATTCGAGCCACCTGAATATGAAGCAGTACAA
ATGATGTGGAGCAATTTTCTGACAAATTATATAGTTTCATTTCAAAAGTTTGAAAGGAAA
AACCAAGATGCTCCTTTTGCTCAAGATGAAAATTCTCCTTCAGTGCCTAGATCTGTTAAC
AAAAAGGAAACCAAAGGCAACCGTAGTAAGACAAATTCCATGAAATCCCAGAAAGACTCC
GGGAAGGGTTTGGTAGTTTTCAAGAACATCCCACAAGTCAAGGGTATTATAAGTAGAACA
TCTTTACGAATGATAAAAGAGAACAAAACATTAACTGCATTCCTTGCATCTGCACAGAGC
ACTTTGGCAGGCACTTCAGAGGTAGCCAGTGAAAAGGACTCACAAACACCCATGTTAGTT
CCAACTAAACCACATCCTGGACCTTTCTCAGTCAAAAAACGATATTCTCCAGCAGTGGTT
TCAATTGGATCACTTTCTTCTCCTAGCTGTTCCTCCAATTCATCATCCAGTGCAAAGGGC
AAGGCAGAGCCTAGGCAGTGGATGGAACCTGATGTTGTACACTTCTCTCTCCCAAATACT
CCTGCAGAGGGCTTTGAATTTCATTTCTCACGTGAAGGCTTGCAGACCACTTGGATTCCA
AAAGATAGAAAAGAGGAGCTGGCTCTAAAACTAGTCCAGCGCTTGGGTGAGTTAAAGCTG
GAGGTGCAAGTCTGGACAGATTGGGCTAATGAGAGGGTGATGCAGTCAACAAATAGGCTG
GTAAATGAAAGGACTGTACTTTTATCTCTTAAAAAGGATAAGGCAGACTTTGAAGAGCCT
GATGTGTTTACAAGAAAGAAGCTTGAGGAGACAAAAAGGGCAATAGACAGTACTTCTTGT
GAGCTTGATCGTGTTAATTCCCTTGTCCAGGAGCTTACAGATAAGGTTTCACTTTGTAGG
CGTGAGAAGAAAGCTGTCCAGCGACAAGGAGAGCAATATGACGCAAGCTTGGCTAGCATT
TTAAGCAAGAAAACTGTGTCTATGAACAGACTGAAGTCCATGGAGACAGAGAAGATCCTT
TTGCAGGAGGAGATTGCTGCTGAAAGGAGTAAACTATCCAAGCTTCTGCAAAGTCTTGAG
CAAGCTAGAAGACATGAAGTCGGATTAAAGAAAAGGTGCCAGGAAGGAGAGAAGATGATA
GATGCACTTACAAAGAAGGTTAACTTTGAAAGAACTGAGCTCGAGAGGATTGAGACATCA
GGAAGAGCAAGGTCTAGTTGTCTGTTGCTGGAAGCGCGCAACCACCAGGAATGGCTGCAG
ACCAATATCAAGAATCTGAGACAGCAGGTAGGTGAGATGTCTAGCAGAAGCAAGCCTCTG
AGCGTCGCAAACTTCATGCGCCACCCAGGTTTTGTGATCGATGATTCTGTACAGCGGGAG
CAGGAATGTGCCATGTGCTTGGAAGAGGAGGTTTCGGTGGTTTTCCTGCCATGCAGGCAT
CAGATTATTTGTGCAGGCTGCAACCAACGCCATGGAGATGGTGGCATGACCGAATGCCCA
TCCTGCAGATCTCCCATAGAGCGTAGGATCTGTGCTCGCTTTACCGACAGTTAGACCGCA
TGGTTAAACACTGTTTTGCACTGTTGTAAAGTGAAGTTTAAATATGGGGATGAGAATGAG
TAAGCTGTTGGAGATAGTCTTAAGATGTGAATGTACAATCCTTGAAGAATCATAGTTTTT
TTTTTTTGCCTTTGTTTCGATGTACCATGGTCTAAAATCGAATTAGAGCCCAAGAGCAAT