Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005085_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:2:157727976:157732248:1 gene:Zm00001d005085 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

ATGAGCATAGAAAAGGCAGTTGAGTTTGATGATTACTGCCATAGTCACCAGCCGCCAATT
GCTTTCATTAAGTCGGAAGTTTGTGGCCTTTTTGGCAGTGTTTTCTGTGATTTTGGTCCT
GAGTTTACTGTTTTGGATGTCGATGGTGAGGAGCCACATACAGGAATTGTGGCATCAATC
AGCAATGACAACCCAGCACTTGTTTCTTGTGTGGATGATGAGCGTCTGGAGTTCCAGGAT
GGTGATCTAGTTGTTTTCTCTGAAGTGCATGGAATGACCGAACTCAATGATGGAAAACCA
AGAAAGATTAAGAATGCAAGGCCTTATTCTTTTACTCTAGAAGAAGACACCACCTCATAT
GGCACTTACATTAGAGGCGGTATTGTCACACAGGTGAAGCCACCAAAGGTTCTTAATTTC
AAAACCTTGAAGGAGGCAATCAAGGAGCCAGGAGAATTTCTCATGAGTGATTTCTCCAAG
TTCGACCGCCCACCTCTTGTGCATTTGGCCTTCCAAGCTTTGGACAAGTTTAGGACTGAG
TTGACACGATTCCCTATTGCTGGGTCAGCTGATGATGTACAGAAGCTGATAGACCTTGCT
ATTAGTATTAATGAAACTCTTGGTGATAGTAAGCTTGAAGAAATTGACAAGAAAGTCTTG
CAGCATTTTGCAAGTGGTTCGAGGGCTGTTTTGAATCCTATGGCTGCAATGTTTGGTGGT
ATTGTAGGTCAGGAGGTTGTTAAAGCATGTTCAGGGAAATTCCATCCACTGTACCAGTTC
TTCTACTTTGATTCTGTCGAATCTCTGCCAGTTGAACCGTTGGAGCCTAGTGATTTGAAG
CCAGAGAACAGTAGATATGATGCGCAAATTAGTGTCTTTGGGGCTAAGCTTCAAAAGAAA
CTGGAGCAGTCAAAAATCTTCATGGTTGGTTCTGGGGCTCTTGGATGTGAATTCTTGAAG
AACCTTGCGTTAATGGGTATTTCTTGCAGTCAAAATGGGAAGCTGACTGTGACAGATGAT
GATGTTATAGAGAAAAGCAATCTCAGTCGCCAGTTTCTCTTCCGTGACTGGAACATCGGA
CAGCCCAAGTCCACAGTTGCTGCAACCGCTGCTATGGCAATTAATCCTAAGCTTCATGTG
GAGGCCCTTCAGAATAGAGCAAGTCCTGAGACTGAAAATGTGTTTAATGATGCCTTTTGG
GAGAGTTTGGATGCTGTTGTTAATGCATTGGACAATGTCACTGCAAGAATGTACATTGAT
TCCAGATGTGTATATTTTCAGAAACCACTTCTTGAATCGGGTACTCTGGGTGCCAAGTGC
AACACACAGATGGTCATTCCTCACCTAACAGAAAACTATGGGGCATCCAGGGATCCACCA
GAAAAGCAGGCACCTATGTGCACTGTACATTCATTTCCTCACAATATTGATCACTGCCTT
ACGTGGGCCAGGTCTGAGTTTGAGGGTCTACTTGAGAAGACTCCCACTGAAGTAAATGCT
TTCCTGTCGAACCCTGGTGGATATGCAACCGCAGCAAGAACTGCTGGTGATGCACAGGCT
AGGGATCAACTTGAGCGAGTTATTGAATGCCTTGAGACAGACAAGTGTGAGACATTCCAA
GATTGTATTACCTGGGCCCGGCTTAAGTTTGAGGATTATTTCTCCAACCGTGTAAAGCAG
CTGACATTCACTTTCCCCGAAGATGCAATGACTAGCTCGGGTGCTCCTTTCTGGTCTGCT
CCTAAGCGGTTCCCGCGACCTCTGGAGTTCTCGTCTTCCGACTCAAGTCACCTTAACTTC
TTGTTGGCTGCATCTGTATTAAGGGCAGAGACATTTGGAATACACATACCTGATTGGGCT
AAGAACCCAAAGAAACTGGCTGAAGCTGTGGACAAGGTCATTGTTCCGGATTTCCAACCA
AAACAGGGTGTTAAGATAGAGACAGACGAGAAGGCTACTAGCCTATCCTCTGCGTCTGTT
GATGATGCTGCTGTCATTGAAGAGCTTATTGCAAAGCTGGAAGAAATTTTTAAAACATTG
CCACCAAGATTCCATATGAACCCTATACAGTTTGAGAAGGATGATGATACCAATTTCCAT
ATGGACTTGATCGCTGGTTTTGCCAACATGCGGGCTAGGAACTACAGCATCCCTGAAGTT
GACAAGTTGAAGGCGAAGTTCATAGCGGGAAGAATCATCCCAGCCATCGCCACCTCAACT
GCAATGGCCACTGGCCTTGTCTGCCTGGAGCTTTACAAAGTCCTCGCTGGTGGGCACAAG
GTCGAAGACTACCGGAACACATTTGCAAACCTGGCAATCCCCCTCTTCTCCATGGCGGAA
CCTGTGCCACCCAAGACCATTAAGCACCAAGACATGTCGTGGACTGTCTGGGACCGCTGG
ACCATAACCGGCAACATCACGCTGAGGGGGCTCCTGGGGTGGCTCAAGGAGAAGGGCTTG
AACGCCTACAGCATATCCTGTGGGACCTCGCTGCTGTACAACTCCATGTTCCCCAGGCAC
AAGGACCGGCTGGACAAGAAGGTGGTGGATGTGGCCAGGGAGGTGGCCAAGGTGGAGGTG
CCATCATACCGCCGCCATCTGGACGTTGTGGTGGCCTGTGAGGATGACGACGACAATGAT
GTCGACGTCCCACTTGTGTCCATTTACTTTCGGTAA

Peptide Sequence

PEP ID

Zm00001d005085_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:2:157727976:157732248:1 gene:Zm00001d005085 transcript:Zm00001d005085_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

MSIEKAVEFDDYCHSHQPPIAFIKSEVCGLFGSVFCDFGPEFTVLDVDGEEPHTGIVASI
SNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKNARPYSFTLEEDTTSY
GTYIRGGIVTQVKPPKVLNFKTLKEAIKEPGEFLMSDFSKFDRPPLVHLAFQALDKFRTE
LTRFPIAGSADDVQKLIDLAISINETLGDSKLEEIDKKVLQHFASGSRAVLNPMAAMFGG
IVGQEVVKACSGKFHPLYQFFYFDSVESLPVEPLEPSDLKPENSRYDAQISVFGAKLQKK
LEQSKIFMVGSGALGCEFLKNLALMGISCSQNGKLTVTDDDVIEKSNLSRQFLFRDWNIG
QPKSTVAATAAMAINPKLHVEALQNRASPETENVFNDAFWESLDAVVNALDNVTARMYID
SRCVYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCL
TWARSEFEGLLEKTPTEVNAFLSNPGGYATAARTAGDAQARDQLERVIECLETDKCETFQ
DCITWARLKFEDYFSNRVKQLTFTFPEDAMTSSGAPFWSAPKRFPRPLEFSSSDSSHLNF
LLAASVLRAETFGIHIPDWAKNPKKLAEAVDKVIVPDFQPKQGVKIETDEKATSLSSASV
DDAAVIEELIAKLEEIFKTLPPRFHMNPIQFEKDDDTNFHMDLIAGFANMRARNYSIPEV
DKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLAGGHKVEDYRNTFANLAIPLFSMAE
PVPPKTIKHQDMSWTVWDRWTITGNITLRGLLGWLKEKGLNAYSISCGTSLLYNSMFPRH
KDRLDKKVVDVAREVAKVEVPSYRRHLDVVVACEDDDDNDVDVPLVSIYFR

Transcript Sequence

Transcript ID

Zm00001d005085_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:157727976:157732248:1 gene:Zm00001d005085 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

AATTAATGTGTCAACTGCTTAGTAGAAAAGGCAAGTGGAAAGCCACAAAATGGTTTATCT
GCATTTGTTGATTCACATTATCAGTGTTAATGCATTTTATTCTTGCATATATTCTTCCAT
GCTAGCATTGTGCTATAGGGTTTTATATGTTTTTTCTAGGTTTAATGAAGTTTCAAAGCC
ATGTTCCTTTTTTGAAATGGTGGCAATTATTTTTCACAATACAACATGTTATGTTTGAGT
GAGTTCCAGTGGATATGGGTGTCTATAGCTCCATCTTTTCATGGAGCTTGAGCTGGGGGA
TTGATTGAGGGTATTTGGGTGATTCACCTGCTTCCTAGTTTAGGTTGGCTAATATTAAAT
GCTTAAACCACTTTATTTTAGCCTGCAAACTCCATAGCCTGAGAATTCAGGAGCAGGTTC
TATCCCAGATAGGGTTTCACTTGAAAATAATTTTCTTGTCAATGGGGATTAGTTGATTTA
ATTTATTGAGCCTTGTTGAAATATGTTAATATTTGTTTCTTGATTAGACTGCCGTGGTTT
TTACTGATATGAGCATAGAAAAGGCAGTTGAGTTTGATGATTACTGCCATAGTCACCAGC
CGCCAATTGCTTTCATTAAGTCGGAAGTTTGTGGCCTTTTTGGCAGTGTTTTCTGTGATT
TTGGTCCTGAGTTTACTGTTTTGGATGTCGATGGTGAGGAGCCACATACAGGAATTGTGG
CATCAATCAGCAATGACAACCCAGCACTTGTTTCTTGTGTGGATGATGAGCGTCTGGAGT
TCCAGGATGGTGATCTAGTTGTTTTCTCTGAAGTGCATGGAATGACCGAACTCAATGATG
GAAAACCAAGAAAGATTAAGAATGCAAGGCCTTATTCTTTTACTCTAGAAGAAGACACCA
CCTCATATGGCACTTACATTAGAGGCGGTATTGTCACACAGGTGAAGCCACCAAAGGTTC
TTAATTTCAAAACCTTGAAGGAGGCAATCAAGGAGCCAGGAGAATTTCTCATGAGTGATT
TCTCCAAGTTCGACCGCCCACCTCTTGTGCATTTGGCCTTCCAAGCTTTGGACAAGTTTA
GGACTGAGTTGACACGATTCCCTATTGCTGGGTCAGCTGATGATGTACAGAAGCTGATAG
ACCTTGCTATTAGTATTAATGAAACTCTTGGTGATAGTAAGCTTGAAGAAATTGACAAGA
AAGTCTTGCAGCATTTTGCAAGTGGTTCGAGGGCTGTTTTGAATCCTATGGCTGCAATGT
TTGGTGGTATTGTAGGTCAGGAGGTTGTTAAAGCATGTTCAGGGAAATTCCATCCACTGT
ACCAGTTCTTCTACTTTGATTCTGTCGAATCTCTGCCAGTTGAACCGTTGGAGCCTAGTG
ATTTGAAGCCAGAGAACAGTAGATATGATGCGCAAATTAGTGTCTTTGGGGCTAAGCTTC
AAAAGAAACTGGAGCAGTCAAAAATCTTCATGGTTGGTTCTGGGGCTCTTGGATGTGAAT
TCTTGAAGAACCTTGCGTTAATGGGTATTTCTTGCAGTCAAAATGGGAAGCTGACTGTGA
CAGATGATGATGTTATAGAGAAAAGCAATCTCAGTCGCCAGTTTCTCTTCCGTGACTGGA
ACATCGGACAGCCCAAGTCCACAGTTGCTGCAACCGCTGCTATGGCAATTAATCCTAAGC
TTCATGTGGAGGCCCTTCAGAATAGAGCAAGTCCTGAGACTGAAAATGTGTTTAATGATG
CCTTTTGGGAGAGTTTGGATGCTGTTGTTAATGCATTGGACAATGTCACTGCAAGAATGT
ACATTGATTCCAGATGTGTATATTTTCAGAAACCACTTCTTGAATCGGGTACTCTGGGTG
CCAAGTGCAACACACAGATGGTCATTCCTCACCTAACAGAAAACTATGGGGCATCCAGGG
ATCCACCAGAAAAGCAGGCACCTATGTGCACTGTACATTCATTTCCTCACAATATTGATC
ACTGCCTTACGTGGGCCAGGTCTGAGTTTGAGGGTCTACTTGAGAAGACTCCCACTGAAG
TAAATGCTTTCCTGTCGAACCCTGGTGGATATGCAACCGCAGCAAGAACTGCTGGTGATG
CACAGGCTAGGGATCAACTTGAGCGAGTTATTGAATGCCTTGAGACAGACAAGTGTGAGA
CATTCCAAGATTGTATTACCTGGGCCCGGCTTAAGTTTGAGGATTATTTCTCCAACCGTG
TAAAGCAGCTGACATTCACTTTCCCCGAAGATGCAATGACTAGCTCGGGTGCTCCTTTCT
GGTCTGCTCCTAAGCGGTTCCCGCGACCTCTGGAGTTCTCGTCTTCCGACTCAAGTCACC
TTAACTTCTTGTTGGCTGCATCTGTATTAAGGGCAGAGACATTTGGAATACACATACCTG
ATTGGGCTAAGAACCCAAAGAAACTGGCTGAAGCTGTGGACAAGGTCATTGTTCCGGATT
TCCAACCAAAACAGGGTGTTAAGATAGAGACAGACGAGAAGGCTACTAGCCTATCCTCTG
CGTCTGTTGATGATGCTGCTGTCATTGAAGAGCTTATTGCAAAGCTGGAAGAAATTTTTA
AAACATTGCCACCAAGATTCCATATGAACCCTATACAGTTTGAGAAGGATGATGATACCA
ATTTCCATATGGACTTGATCGCTGGTTTTGCCAACATGCGGGCTAGGAACTACAGCATCC
CTGAAGTTGACAAGTTGAAGGCGAAGTTCATAGCGGGAAGAATCATCCCAGCCATCGCCA
CCTCAACTGCAATGGCCACTGGCCTTGTCTGCCTGGAGCTTTACAAAGTCCTCGCTGGTG
GGCACAAGGTCGAAGACTACCGGAACACATTTGCAAACCTGGCAATCCCCCTCTTCTCCA
TGGCGGAACCTGTGCCACCCAAGACCATTAAGCACCAAGACATGTCGTGGACTGTCTGGG
ACCGCTGGACCATAACCGGCAACATCACGCTGAGGGGGCTCCTGGGGTGGCTCAAGGAGA
AGGGCTTGAACGCCTACAGCATATCCTGTGGGACCTCGCTGCTGTACAACTCCATGTTCC
CCAGGCACAAGGACCGGCTGGACAAGAAGGTGGTGGATGTGGCCAGGGAGGTGGCCAAGG
TGGAGGTGCCATCATACCGCCGCCATCTGGACGTTGTGGTGGCCTGTGAGGATGACGACG
ACAATGATGTCGACGTCCCACTTGTGTCCATTTACTTTCGGTAAAGAGGGGCTCACCGCC
CGTTTACATGTTGATCCTGTGCGATATTTGTCAATGTTTGTCTCAGAAGGATCAAGTGTA
TAATTTGCGATAGCAACCGTGAACTAGATTGTGTTTAAGCACATACTGATGATTTCCTGT
GCTGCCATCTGGTTAGACTTGGCTGGGAATTGTCGCTGAGATTTGGACCACTGTTATGGA
ATTCTTAAGCATAACATTATG