Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d005004_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:153295095:153299657:1 gene:Zm00001d005004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

ATGGAAGACCAATCGCCTGACCATATATCAGTCGGTTCAGCACAAAAGAAGTCTAGTACT
TCCTCACGAGGCCGGCACCGTAATTTCTCATCATCAACATGCAAAGATTTTCTCCGGAAG
TTTGTGGACAGTGAACTTTTAACTTCAAGCCTAGAGGATTGGTTCTCTGGTCACAGTGAA
GATTGTGGTTTCAGGAAGCCATCTTTTGATGTTCCTTTCGACCTTACAGAATTACAGAGT
TTTGATTACGCTCTGGAGAGTGTTACTTTTCAGCAGCTAGTACGGATGCCAAATGCCCTA
TATGCATCGACATCAGATGTTTTTGAAGCTACTGCATATCTTGCTTTAGAGGATTTCCTT
CATGCAAGCATTAAAGGACTGTGGCAAACTTTCTGGGGTCCTGATGAATCAATGCCATTT
TCAGTTGCCTGTATACACAGCACAAGCTCCAAATTTTATCCTGCTGAGAAGGCTATTAGC
AGTGGAAAACTCGATGGTGTTTGTGCAACCGCTATACTACTCAAGAATTTGAAGCATTCA
CAAGGAAGATGGGACCATATTGTCGTCTTGGCTTTGTTGAGACCTGATATTGGAATGGTT
TCTGCACATGGTGACCAGGAGCCGTCTCCTGCTGTTTTAGGGGAGGCACTGTTCTTTGCT
TTGCGTGTCCTACTATCTCGAAGCCTTGGCAGATCCTCCACTGTTCTTCGCAATTCAGAC
TGTGTTTACTTGCTTCTTGTTGATTCACAGTTTGGCGGAGTGGTAAAAGTGCAAGGTGAT
TTGAACAAGCTGGATTTTGACCTAAACAATGTTTATGACTGTGCTGCTGAATGGATAAAG
AAACATGCCAACATTTCAGTTTCTTCCATAGATCGAGTATGGAACAAACTTGGGAATGCT
AACTGGGGAGACATCGGGACCCTTCAGGTTCTCATTGCAATGTTTCACTCAATGATCCAA
TTTTATGGAGAGCCTAAGTATTCTCTTGATGAGCTGGCAACGGAACATAGTTCAAGGCTA
CAAAGTCGAAGATCAGAAAGACATTTGGTTGACAGACAAGCTAATGGTAATGGTTTATTT
CGATTCCAACAGCGGAGTCGTTCTCCTGAAATTGTTGAAGTACAGGAGGAAGCAGCTGTC
GATGTGAAACCACATGAAACCTTAAGGATTGAAATAGGATCTGTTGTGTTGATGGATGAT
GCTTACATGCAGAAAGGTTTTCAGATCAATGACATCCTAACAGACAGTGATCCTCCTATT
TATACTTCTACTCCTGTAGAAGAACCTACCAGAACCTATTTGCTGTATGTGGGCTCCAGC
CCTTCTCATTTGGAACCGGCATGGGAGGATATGAACTCCTGGTACCAAGTACAGAGGCAG
ACAAAAGTACTGACTGTGATGAAGCAAAGATGCATTTCTAGCAGATATATACCACAGATG
GTATCTTCTGGACGGCTCGTCCATCCAGGCCCATGTAACAAGCCTAACTCAAATGGAAGT
TGTGGCCATCCATGGTGCAGTACTCCAATGCTTGTCACCTCACCAGTCGGTGAGACCATT
TCAAATCTGATAAGGAATGGACTGTTTGGTGTTGAGGAGGCTCTGAGATGTTGCCATGAC
TGTTTATCTGCTCTCGCCGCCGCCGCAGCAGCAGGAATCCGCCATGGTGATATCCGGCCA
GAGAATGTGATCCGTGTCAATAACGGCTCAAGGCATCCATATTTCGTGCTTATTGGATGG
GGCCATGCTATCCTAGAAGATAGAGACCGGCCTGTGATGAATCTATTCTTCTCATCCACG
TTTGCGCTCCAGGAAGGAAAACTATGTGGAGCATCTGACGCAGAAAGTTTAATCTATCTT
CTATATTTCTCTTGTGGTGGAGTTTGCCCTGAGCTTGACTCTGTTGAAAGTGCACTTCAG
TGGAGGGAGACTTCGTGGTCGAGGAGAGTCATACAGCAGAAGTTGGGCGACATCTCTGCG
GTGCTGAAAGCTTTTGCGGATTATGTTGACAGCCTTTGTGGAACCCCGTACCCGATGGAC
TATGAGATCTGGTTGAAACGGCTTCGAAGAACAATGAACGAAGATCATGGGAAGGAGGTC
GACACATCCTCGAGTTAA

Peptide Sequence

PEP ID

Zm00001d005004_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:153295095:153299657:1 gene:Zm00001d005004 transcript:Zm00001d005004_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

MEDQSPDHISVGSAQKKSSTSSRGRHRNFSSSTCKDFLRKFVDSELLTSSLEDWFSGHSE
DCGFRKPSFDVPFDLTELQSFDYALESVTFQQLVRMPNALYASTSDVFEATAYLALEDFL
HASIKGLWQTFWGPDESMPFSVACIHSTSSKFYPAEKAISSGKLDGVCATAILLKNLKHS
QGRWDHIVVLALLRPDIGMVSAHGDQEPSPAVLGEALFFALRVLLSRSLGRSSTVLRNSD
CVYLLLVDSQFGGVVKVQGDLNKLDFDLNNVYDCAAEWIKKHANISVSSIDRVWNKLGNA
NWGDIGTLQVLIAMFHSMIQFYGEPKYSLDELATEHSSRLQSRRSERHLVDRQANGNGLF
RFQQRSRSPEIVEVQEEAAVDVKPHETLRIEIGSVVLMDDAYMQKGFQINDILTDSDPPI
YTSTPVEEPTRTYLLYVGSSPSHLEPAWEDMNSWYQVQRQTKVLTVMKQRCISSRYIPQM
VSSGRLVHPGPCNKPNSNGSCGHPWCSTPMLVTSPVGETISNLIRNGLFGVEEALRCCHD
CLSALAAAAAAGIRHGDIRPENVIRVNNGSRHPYFVLIGWGHAILEDRDRPVMNLFFSST
FALQEGKLCGASDAESLIYLLYFSCGGVCPELDSVESALQWRETSWSRRVIQQKLGDISA
VLKAFADYVDSLCGTPYPMDYEIWLKRLRRTMNEDHGKEVDTSSS

Transcript Sequence

Transcript ID

Zm00001d005004_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:153295095:153299657:1 gene:Zm00001d005004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

AACAAACAGTCGGGCTGGCACTGGCAGTCCCAGTCAAAGCTCTCTCCGCTCTGCCGTCGC
TCGCCACCGGAATTCGGGGATCGGTGGGAAGAACAAAGAAAAGAAAAGAAATCGCCGATC
GATTTCTCCCGAAATAAACCCCCCCACCTTTTTTCTACCTCCTTCCGTCTGTTTCCGGAG
GGCGACTGATGTCTTTTCTCGGGGCTGGGGCGGCCGTCCAGCGACCACGGAGCTGCTGCG
CCTGCGCGGAGGCAGTTGGGGAGGAGTAGTCGCTCTACCCCTACCACTCCCGCTCCAATC
TAGCGACGACGACGACGACGACGACCCGCCCGCCCCATGGAAGACCAATCGCCTGACCAT
ATATCAGTCGGTTCAGCACAAAAGAAGTCTAGTACTTCCTCACGAGGCCGGCACCGTAAT
TTCTCATCATCAACATGCAAAGATTTTCTCCGGAAGTTTGTGGACAGTGAACTTTTAACT
TCAAGCCTAGAGGATTGGTTCTCTGGTCACAGTGAAGATTGTGGTTTCAGGAAGCCATCT
TTTGATGTTCCTTTCGACCTTACAGAATTACAGAGTTTTGATTACGCTCTGGAGAGTGTT
ACTTTTCAGCAGCTAGTACGGATGCCAAATGCCCTATATGCATCGACATCAGATGTTTTT
GAAGCTACTGCATATCTTGCTTTAGAGGATTTCCTTCATGCAAGCATTAAAGGACTGTGG
CAAACTTTCTGGGGTCCTGATGAATCAATGCCATTTTCAGTTGCCTGTATACACAGCACA
AGCTCCAAATTTTATCCTGCTGAGAAGGCTATTAGCAGTGGAAAACTCGATGGTGTTTGT
GCAACCGCTATACTACTCAAGAATTTGAAGCATTCACAAGGAAGATGGGACCATATTGTC
GTCTTGGCTTTGTTGAGACCTGATATTGGAATGGTTTCTGCACATGGTGACCAGGAGCCG
TCTCCTGCTGTTTTAGGGGAGGCACTGTTCTTTGCTTTGCGTGTCCTACTATCTCGAAGC
CTTGGCAGATCCTCCACTGTTCTTCGCAATTCAGACTGTGTTTACTTGCTTCTTGTTGAT
TCACAGTTTGGCGGAGTGGTAAAAGTGCAAGGTGATTTGAACAAGCTGGATTTTGACCTA
AACAATGTTTATGACTGTGCTGCTGAATGGATAAAGAAACATGCCAACATTTCAGTTTCT
TCCATAGATCGAGTATGGAACAAACTTGGGAATGCTAACTGGGGAGACATCGGGACCCTT
CAGGTTCTCATTGCAATGTTTCACTCAATGATCCAATTTTATGGAGAGCCTAAGTATTCT
CTTGATGAGCTGGCAACGGAACATAGTTCAAGGCTACAAAGTCGAAGATCAGAAAGACAT
TTGGTTGACAGACAAGCTAATGGTAATGGTTTATTTCGATTCCAACAGCGGAGTCGTTCT
CCTGAAATTGTTGAAGTACAGGAGGAAGCAGCTGTCGATGTGAAACCACATGAAACCTTA
AGGATTGAAATAGGATCTGTTGTGTTGATGGATGATGCTTACATGCAGAAAGGTTTTCAG
ATCAATGACATCCTAACAGACAGTGATCCTCCTATTTATACTTCTACTCCTGTAGAAGAA
CCTACCAGAACCTATTTGCTGTATGTGGGCTCCAGCCCTTCTCATTTGGAACCGGCATGG
GAGGATATGAACTCCTGGTACCAAGTACAGAGGCAGACAAAAGTACTGACTGTGATGAAG
CAAAGATGCATTTCTAGCAGATATATACCACAGATGGTATCTTCTGGACGGCTCGTCCAT
CCAGGCCCATGTAACAAGCCTAACTCAAATGGAAGTTGTGGCCATCCATGGTGCAGTACT
CCAATGCTTGTCACCTCACCAGTCGGTGAGACCATTTCAAATCTGATAAGGAATGGACTG
TTTGGTGTTGAGGAGGCTCTGAGATGTTGCCATGACTGTTTATCTGCTCTCGCCGCCGCC
GCAGCAGCAGGAATCCGCCATGGTGATATCCGGCCAGAGAATGTGATCCGTGTCAATAAC
GGCTCAAGGCATCCATATTTCGTGCTTATTGGATGGGGCCATGCTATCCTAGAAGATAGA
GACCGGCCTGTGATGAATCTATTCTTCTCATCCACGTTTGCGCTCCAGGAAGGAAAACTA
TGTGGAGCATCTGACGCAGAAAGTTTAATCTATCTTCTATATTTCTCTTGTGGTGGAGTT
TGCCCTGAGCTTGACTCTGTTGAAAGTGCACTTCAGTGGAGGGAGACTTCGTGGTCGAGG
AGAGTCATACAGCAGAAGTTGGGCGACATCTCTGCGGTGCTGAAAGCTTTTGCGGATTAT
GTTGACAGCCTTTGTGGAACCCCGTACCCGATGGACTATGAGATCTGGTTGAAACGGCTT
CGAAGAACAATGAACGAAGATCATGGGAAGGAGGTCGACACATCCTCGAGTTAATAACAC
AGCGCCATTTTCTCGCAAATCCGAGATTCGGAAGATCAAGTGATTGGCCTGTTACCTGTT
TTTGTTGTTGTAGATAATTTATTTGTGAAAGGTCCATAGGTCATAGTCTGTCCATCGTTT
TGATATACCGTTGCTTGGATATAAGGGTATTCTGAAGTTGCAATCTGCTGCTGCTATCCT
CAATGGGATCACTGCCCAGTGTTTACTATCCCGTGTGCTTGCCCTAAGCCCTTCCTTCGC
ACAGGTGATCCTTGAGGATATCAGCAACATGATGTATTTTGTGAATCTTGGGTAAATTGG
TGAGCCTCCGCTCTGGTTGCCTTGAGAGATTCTGGTCCCGTTTTATCCGGTTCTGGTAGG
CTTCAGGGTGATTTGTTTTTCTTGTGATCGGTGTCAGAACTTGTTAATCAGTTGGTGAAT
GTGTACCTCTAACTGTGTGGTATCAATCTTTTGCCAAGCAGTTTAGGCCTGTTTCCCACA
CAAAGGTTGGATCTAGAAACCATTGAACTGAACCTAGAGTATTTATTCCATTAAATACAG
AATATTATTATTT