Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d004960_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:2:150751734:150757090:-1 gene:Zm00001d004960 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-isopropylmalate synthase 1 chloroplastic
Sequence	ATGGCCTTCTCCGCTAAACCCCACTGCTCCTGCTCCACCACCACCAAACCCCCCACCCCC GTCGCCCACCTCTCTCCACCCCCGTCCCTCTCCGTCCGCGCCGCCGCCTGCGCCCCGCGC TCCGCCTATGGCCTCTCTGCCGCCGGCGTGGGCGGCGGCAAGGCGTCCCCCAGTACCGTT CGCCTCCGCGCTCGGGCCCAGCGCATCCGCGCGTCGCAGCAGCAGCCGCGGCGGCGCCCT GAATACGTGCCGAACCGCATCGACGACCCCAACTACGTGCGCATCTTCGACACCACGCTC CGCGACGGGGAGCAGTCCCCGGGCGCCACCATGACGAGCGCCGAGAAGCTCGTCGTCGCG CGCCAGCTGGCCCGCCTCGGCGTCGACATCATCGAGGCGGGGTTCCCGGCCTCCTCCCCC GACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGCAACCCGCCCACCGCCGGC GCTGGGACCGCCCACGTGCCCGTCATCTGCGGCCTGTCGCGGTGCAACAGGAAGGACATC GACGCCGCATGGGAGGCCGTCAGGCACGCTCGGAGGCCCCGGATCCACACTTTCATCGCC ACCAGCGAGATCCATATGCAGCATAAGCTCAGGAAGACGCCCGAGCAGGTCGTCGCTATT GCCAGGGAGATGGTGGCGTACGCGCGCAGCCTCGGGTGCCCCGATGTTGAATTCAGCCCT GAGGATGCCGGCAGGTCAAATCGAGAATTCCTGTATCATATACTGGAGGAAGTCATTAAA GCTGGAGCAACCACTCTTAATATCCCAGACACTGTCGGATACACTCTTCCTTATGAATTT GGGAAATTAATTGCTGACATAAAGGCAAACACTTCTGGAATTGAAAATGCTATCATTTCC ACTCATTGCCAGAATGACCTTGGTCTTGCGACTGCCAACACATTAGCGGGTGCTCGCTCA GGAGCAAGACAGTTAGAGGTGACTATTAATGGTATTGGTGAAAGAGCTGGAAATGCTTCA TTGGAAGAGGTTGTCATGGCAATTAAATGTCGTGGGGAGCTCTTAGATGGTCTATATACG GGAATTAATTCCCAGCATATTACTTTGACAAGCAAAATGGTACAAGAGCATAGTGGACTT CATGTGCAACCACATAAGGCTATTGTTGGTGCCAATGCCTTTGCTCATGAAAGTGGAATT CATCAGGATGGCATGCTTAAATATAAAGGAACATATGAAATAATATCGCCTGATGATATT GGTTTAACACGTGCAAATGAATTTGGTATTGTTCTTGGGAAACTCAGCGGAAGGCATGCA GTGAGATCTAAGCTAGTGGAGCTTGGATATGAAATCAGTGACAAGGAATTTGAAGATTTC TTTAAACGCTACAAAGAGGTCGCAGAGAAGAAAAAGCGTGTAACTGATGAAGACATAGAA GCGTTATTGTCAGATGAGATATTCCAGCCTAAGGTTATTTGGTCCCTTGCTGATGTACAG GCAACATGTGGAACACTTGGCTTATCTACAGCAACAGTGAAACTGATAGCACCAGATGGA GAGGAGAGAATAGCATGTTCAGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTATT GACCAAATAATCCAGATCCCAACTGTTCTCCGAGAATATGGTATGACCTCAGTCACCGAA GGCATCGACGCAATCGCAACAACCCGGGTGGTTGTCACCGGAGATGTGACCAACAACTCC AAACATGCCTTGACTGGCCGCGCTTTCAACCGCTCCTTCAGCGGGAGCGGGGCAGCAATG GACATCGTCGTCTCCAGTGTCAGAGCTTACCTGAGTGCCCTGAACAAGATGTGTAGCTTT GCTGGTGCCGCGAAAGCCAGCGGCGAGGTACCTGAGAGTGCAAGCGTCCAAAGCGCAGAG TGA

Peptide Sequence

PEP ID	Zm00001d004960_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:2:150751734:150757090:-1 gene:Zm00001d004960 transcript:Zm00001d004960_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-isopropylmalate synthase 1 chloroplastic
Sequence	MAFSAKPHCSCSTTTKPPTPVAHLSPPPSLSVRAAACAPRSAYGLSAAGVGGGKASPSTV RLRARAQRIRASQQQPRRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVA RQLARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNPPTAGAGTAHVPVICGLSRCNRKDI DAAWEAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAREMVAYARSLGCPDVEFSP EDAGRSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTSGIENAIIS THCQNDLGLATANTLAGARSGARQLEVTINGIGERAGNASLEEVVMAIKCRGELLDGLYT GINSQHITLTSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDI GLTRANEFGIVLGKLSGRHAVRSKLVELGYEISDKEFEDFFKRYKEVAEKKKRVTDEDIE ALLSDEIFQPKVIWSLADVQATCGTLGLSTATVKLIAPDGEERIACSVGTGPVDAAYKAI DQIIQIPTVLREYGMTSVTEGIDAIATTRVVVTGDVTNNSKHALTGRAFNRSFSGSGAAM DIVVSSVRAYLSALNKMCSFAGAAKASGEVPESASVQSAE

Transcript Sequence

Transcript ID	Zm00001d004960_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:150751734:150757090:-1 gene:Zm00001d004960 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-isopropylmalate synthase 1 chloroplastic
Sequence	TCTGCTTCTTCAAACCACTCGCATTTCCACATCAACATCAACACGAGGCCCTGCCGCCGC CGCCGCCCGCCCGCCCCCTCCTAAACCCCGGCGACCAACCATGGCCTTCTCCGCTAAACC CCACTGCTCCTGCTCCACCACCACCAAACCCCCCACCCCCGTCGCCCACCTCTCTCCACC CCCGTCCCTCTCCGTCCGCGCCGCCGCCTGCGCCCCGCGCTCCGCCTATGGCCTCTCTGC CGCCGGCGTGGGCGGCGGCAAGGCGTCCCCCAGTACCGTTCGCCTCCGCGCTCGGGCCCA GCGCATCCGCGCGTCGCAGCAGCAGCCGCGGCGGCGCCCTGAATACGTGCCGAACCGCAT CGACGACCCCAACTACGTGCGCATCTTCGACACCACGCTCCGCGACGGGGAGCAGTCCCC GGGCGCCACCATGACGAGCGCCGAGAAGCTCGTCGTCGCGCGCCAGCTGGCCCGCCTCGG CGTCGACATCATCGAGGCGGGGTTCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCG CTCCATCGCCATCGAGGTCGGCAACCCGCCCACCGCCGGCGCTGGGACCGCCCACGTGCC CGTCATCTGCGGCCTGTCGCGGTGCAACAGGAAGGACATCGACGCCGCATGGGAGGCCGT CAGGCACGCTCGGAGGCCCCGGATCCACACTTTCATCGCCACCAGCGAGATCCATATGCA GCATAAGCTCAGGAAGACGCCCGAGCAGGTCGTCGCTATTGCCAGGGAGATGGTGGCGTA CGCGCGCAGCCTCGGGTGCCCCGATGTTGAATTCAGCCCTGAGGATGCCGGCAGGTCAAA TCGAGAATTCCTGTATCATATACTGGAGGAAGTCATTAAAGCTGGAGCAACCACTCTTAA TATCCCAGACACTGTCGGATACACTCTTCCTTATGAATTTGGGAAATTAATTGCTGACAT AAAGGCAAACACTTCTGGAATTGAAAATGCTATCATTTCCACTCATTGCCAGAATGACCT TGGTCTTGCGACTGCCAACACATTAGCGGGTGCTCGCTCAGGAGCAAGACAGTTAGAGGT GACTATTAATGGTATTGGTGAAAGAGCTGGAAATGCTTCATTGGAAGAGGTTGTCATGGC AATTAAATGTCGTGGGGAGCTCTTAGATGGTCTATATACGGGAATTAATTCCCAGCATAT TACTTTGACAAGCAAAATGGTACAAGAGCATAGTGGACTTCATGTGCAACCACATAAGGC TATTGTTGGTGCCAATGCCTTTGCTCATGAAAGTGGAATTCATCAGGATGGCATGCTTAA ATATAAAGGAACATATGAAATAATATCGCCTGATGATATTGGTTTAACACGTGCAAATGA ATTTGGTATTGTTCTTGGGAAACTCAGCGGAAGGCATGCAGTGAGATCTAAGCTAGTGGA GCTTGGATATGAAATCAGTGACAAGGAATTTGAAGATTTCTTTAAACGCTACAAAGAGGT CGCAGAGAAGAAAAAGCGTGTAACTGATGAAGACATAGAAGCGTTATTGTCAGATGAGAT ATTCCAGCCTAAGGTTATTTGGTCCCTTGCTGATGTACAGGCAACATGTGGAACACTTGG CTTATCTACAGCAACAGTGAAACTGATAGCACCAGATGGAGAGGAGAGAATAGCATGTTC AGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTATTGACCAAATAATCCAGATCCC AACTGTTCTCCGAGAATATGGTATGACCTCAGTCACCGAAGGCATCGACGCAATCGCAAC AACCCGGGTGGTTGTCACCGGAGATGTGACCAACAACTCCAAACATGCCTTGACTGGCCG CGCTTTCAACCGCTCCTTCAGCGGGAGCGGGGCAGCAATGGACATCGTCGTCTCCAGTGT CAGAGCTTACCTGAGTGCCCTGAACAAGATGTGTAGCTTTGCTGGTGCCGCGAAAGCCAG CGGCGAGGTACCTGAGAGTGCAAGCGTCCAAAGCGCAGAGTGAGCTTGGCGACGATTTGG TTCTCATGTGGACTGGGCGGCGTAAGAGCCAGAGCAACTGTTAAAGAGGGTGACATTTCG TTTCTGTATTAGGCTGTTCAATGTTGGGGGTTTTGCCTTGTCAGTGTGGTGTGACTGTAC TGTTCTTTTTTTGGAGGATAGCCCAGCTTGGAACGTGCAGGCAATTTTGGACCTAGGTAG TGTACAATTTGTATCTTATATGAACAATACTTCCAATAATCGAAAGACT