Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d004898_T017
CDS Infomation	cds chromosome:B73_RefGen_v4:2:147703237:147707274:-1 gene:Zm00001d004898 gene_biotype:protein_coding transcript_biotype:protein_coding description:ERAD-associated E3 ubiquitin-protein ligase HRD1A
Sequence	ATGGTCGCTGCACTGCTTCTTGTTAAGGCACTGCACTGGCTCGCGCAGAAGAGGGTCGAG TACATCGAGACCACACCCTCCGTGCCCTTGCTCTCGCACATCAGGATTGTATCCTTCATG GTTTTCCTGCTCACGGTCGATTGCCTCTTCCTGTCAAACTCACTCAGGTCACTCATACAG AAGCGGGAGGCGTCTGTTGCCATCTTCTTCTCCTTTGAATATACGATACTAGCAACATCC ACTTTATCAACATTTGTGAAGTACATATTCTATGTCAGTGACATGCTAATGGAAGGTCAA TGGGAGAGAAAGGCAGTTTATACATTTTACTTGGAGCTCATCAGTGACCTTGTGCACTTG TCATTATACATGCTCTTCTTCATAGCTATCTTCTTGAACTATGGTGTCCCGCTGCACTTG ATTCGTGAGCTATATGAGACCTTCCGCAGCTTCAGAATTCGCATTGCAGATTACATACGT TACAGAAAGATCACTTCCAACATGAATGAACGCTTTCCAGAAGCTACATCAGAAGAGCTC GATGCGAGTGATGCTACATGTATTATTTGCCGTGAGGAGATGACTACAGCAAAGAAACTG CTCTGTGGGCATCTGTTCCATGTGCATTGTCTGAGGTCATGGCTAGAGCGCCAACACACT TGCCCCACGTGCAGAGCTCCAATCGTTCCTGCAGATAATGGACGTGCTGCATCATCACGA CAACATGGAGCCCAGGCTGGGGTTCAACCTGGTACTGCCACTCCATCCTCAGAAGGAGCA CCAGGTGAGAACATGAGCAGGCGCCAAGCAAAACTTGAAGCTGCTGCTGCAGCAGCTTCT TTATATGGAAGATCTTTTGTTTATCCTCCAGCAAACACCCTAAACAGGTCTGGTTCTCCC CAGCCTACATCAAGTGCACCACAATCTGAAGCCAGTAGCTCCAATCATCAGTCACAAAAA GACCAAGAAACACAGCTCCAAAACAGCAGCGATGGTTTAGTGCCTCTGCCTTTTAGTGCA GATGGTGTTGTTGGTTCAGGAACAAGCACAAGAGATCTTGAAAATTCACTGCAGAAGGCA CAAGAAAACTTTATTAAGAGCCAGATTGAGATGTTACAAATCCAACTGCAAATGGTGCAG CGTGGCGCTGCTGGGTTGAGCAGTAGCGAGAACACTGAGCACACAGAAGACTGA

Peptide Sequence

PEP ID	Zm00001d004898_P017
PEP Infomation	pep chromosome:B73_RefGen_v4:2:147703237:147707274:-1 gene:Zm00001d004898 transcript:Zm00001d004898_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:ERAD-associated E3 ubiquitin-protein ligase HRD1A
Sequence	MVAALLLVKALHWLAQKRVEYIETTPSVPLLSHIRIVSFMVFLLTVDCLFLSNSLRSLIQ KREASVAIFFSFEYTILATSTLSTFVKYIFYVSDMLMEGQWERKAVYTFYLELISDLVHL SLYMLFFIAIFLNYGVPLHLIRELYETFRSFRIRIADYIRYRKITSNMNERFPEATSEEL DASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIVPADNGRAASSR QHGAQAGVQPGTATPSSEGAPGENMSRRQAKLEAAAAAASLYGRSFVYPPANTLNRSGSP QPTSSAPQSEASSSNHQSQKDQETQLQNSSDGLVPLPFSADGVVGSGTSTRDLENSLQKA QENFIKSQIEMLQIQLQMVQRGAAGLSSSENTEHTED

Transcript Sequence

Transcript ID	Zm00001d004898_T017
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:147703237:147707274:-1 gene:Zm00001d004898 gene_biotype:protein_coding transcript_biotype:protein_coding description:ERAD-associated E3 ubiquitin-protein ligase HRD1A
Sequence	GCGCCTGGTAATTTTGGATCATTCGTTTCTTCTAGGCGACCCAGTGCTGTTCTGGTGCGG TTTCATTGCGGAAGTTTTGTTGTGGGATTTTCCGGTGGCGAAGATGATCCGACTACCCAT GTACGCGGCGTTCAGCCTGGCAGCTCGCCAGGCGTCTCTTCCTCGGCTCCCTCCGGGAGG CCGAGGTCGAGCGCCTCAACGAGCAGTCCTGGCGGGAGGTCATCGAGATTCTCTTCGCCG TCACCATCTTCCGGCAGGACTTCTCGGTGTCCTTCCTTGCCATGGTCGCTGCACTGCTTC TTGTTAAGGCACTGCACTGGCTCGCGCAGAAGAGGGTCGAGTACATCGAGACCACACCCT CCGTGCCCTTGCTCTCGCACATCAGGATTGTATCCTTCATGGTTTTCCTGCTCACGGTCG ATTGCCTCTTCCTGTCAAACTCACTCAGGTCACTCATACAGAAGCGGGAGGCGTCTGTTG CCATCTTCTTCTCCTTTGAATATACGATACTAGCAACATCCACTTTATCAACATTTGTGA AGTACATATTCTATGTCAGTGACATGCTAATGGAAGGTCAATGGGAGAGAAAGGCAGTTT ATACATTTTACTTGGAGCTCATCAGTGACCTTGTGCACTTGTCATTATACATGCTCTTCT TCATAGCTATCTTCTTGAACTATGGTGTCCCGCTGCACTTGATTCGTGAGCTATATGAGA CCTTCCGCAGCTTCAGAATTCGCATTGCAGATTACATACGTTACAGAAAGATCACTTCCA ACATGAATGAACGCTTTCCAGAAGCTACATCAGAAGAGCTCGATGCGAGTGATGCTACAT GTATTATTTGCCGTGAGGAGATGACTACAGCAAAGAAACTGCTCTGTGGGCATCTGTTCC ATGTGCATTGTCTGAGGTCATGGCTAGAGCGCCAACACACTTGCCCCACGTGCAGAGCTC CAATCGTTCCTGCAGATAATGGACGTGCTGCATCATCACGACAACATGGAGCCCAGGCTG GGGTTCAACCTGGTACTGCCACTCCATCCTCAGAAGGAGCACCAGGTGAGAACATGAGCA GGCGCCAAGCAAAACTTGAAGCTGCTGCTGCAGCAGCTTCTTTATATGGAAGATCTTTTG TTTATCCTCCAGCAAACACCCTAAACAGGTCTGGTTCTCCCCAGCCTACATCAAGTGCAC CACAATCTGAAGCCAGTAGCTCCAATCATCAGTCACAAAAAGACCAAGAAACACAGCTCC AAAACAGCAGCGATGGTTTAGTGCCTCTGCCTTTTAGTGCAGATGGTGTTGTTGGTTCAG GAACAAGCACAAGAGATCTTGAAAATTCACTGCAGAAGGCACAAGAAAACTTTATTAAGA GCCAGATTGAGATGTTACAAATCCAACTGCAAATGGTGCAGCGTGGCGCTGCTGGGTTGA GCAGTAGCGAGAACACTGAGCACACAGAAGACTGACTGAATCTGTAAACAGGCACTCCTG CATCGTGGAGTAATAATGAGAATACTGAGCACACGCAGCTGAATCTGTAAATAGGCGGAG ATGAGGATGGGGATAAAAGAAAGCAATCAAAGAATTGGCTATACCTGGGGGAAACTGATG TTTTGCCTGGATTTTGGTAGGCTTGTTGACTATGCTTTCCTGTTACTGTGTTAGTGCCTT CTTGCCAGCGTTAGATGTTTCTCTACGTGTGGTGGTTTCTGTAGGTTGGGTACATCTAA