Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004812_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:2:140809536:140813969:1 gene:Zm00001d004812 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium dependent protein kinase11 description: calcium dependent protein kinase11
Sequence

ATGCAGCCGGACCCGAGCGGGAACGCCAATGCGAAGACGAAACTGCCGCAGCTGGTGACG
GCGCCGGCTCCGTCGTCGGGGCGTCCGGCGTCCGTGCTTCCGTACAAGACGGCGAACGTG
CGGGACCACTACCGCATCGGCAAGAAACTGGGGCAGGGGCAGTTCGGCACCACGTACCAG
TGCGTGGGCAAGGCGGACGGCGCTGAGTACGCATGCAAGTCCATCCCCAAGCGCAAGCTG
CTGTGCCGGGAGGACTACGAGGACGTCTACCGCGAGATCCAGATCATGCACCACCTCTCC
GAGCACCCCAACGTCGTCCGCATCCGCGGCGCCTACGAGGACGCGCTCTTCGTGCACATC
GTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCGTCGCCAAGGGCCACTAC
AGTGAGCGCGCGGCTGCGAAGCTCATCAAGACCATTGTCGGGGTCGTGGAGGGATGTCAC
TCGCTCGGCGTCATGCACCGGGACCTCAAGCCGGAGAATTTTCTCTTTGCCAGCACCGCC
GAGGAAGCCCCACTCAAGGCCACTGACTTTGGGCTTTCCATGTTCTACAAGCCCGGTGAT
AAATTCTCTGATGTCGTTGGAAGTCCATACTATGTTGCACCAGAGGTGCTTCAGAAATGC
TATGGTCCAGAAGCTGATGTGTGGAGCGCAGGAGTAATTCTGTACATTTTGCTTTGTGGT
GTGCCCCCGTTTTGGGCAGAAACTGAGGCTGGAATCTTCAGGCAGATTCTGCGAGGCAAA
CTTGATTTTGAATCTGAACCCTGGCCTAGTATTTCTGATAGTGCTAAGGATCTGGTCTGC
AATATGCTTACACGGGATCCTAAAAAGAGATTTAGTGCTCATGAGGTTCTCTGTCACGCA
TGGATTGTTGACGATGCCGTGGCACCTGATAAGCCTATTGATTCTGCTGTTCTCTCAAGG
CTGAAGCATTTTTCGGCAATGAACAAGCTCAAGAAGATGGCATTAAGGGTTATTGCTGAA
AGCCTGTCTGAGGAAGAGATTGGAGGCCTCAAGGAGTTGTTCAAGATGATTGATACTGAC
AGTAGTGGGACTATAACATTTGATGAGCTGAAAGATGGCTTGAAAAGGGTAGGCTCTGAA
TTAACAGAGAACGAAATCCAGGCTCTAATGGAAGCAGCTGATATTGATAACAGCGGAACC
ATCGACTACGGCGAATTCATTGCAGCTACGTTGCACATGAACAAACTGGAGAGGGAGGAA
AACTTGGTTTCAGCATTCTCGTTTTTTGACAAAGATGGAAGTGGCTTTATAACCATCGAT
GAGCTGTCACAAGCATGTCGCGAATTTGGTCTCGATGACCTCCACCTCGAGGATATGATT
AAAGATGTTGACCAGAACAATGATGGCCAAATCGACTACAGCGAGTTCACGGCGATGATG
AGGAAGGGCAATGCTGGTGCAACAGGAAGGAGAACCATGAGGAACAGCTTGCACTTGAAT
CTCGGCGAACTCTTGAATCCCAGCAAAACCTAG

Peptide Sequence

PEP ID

Zm00001d004812_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:2:140809536:140813969:1 gene:Zm00001d004812 transcript:Zm00001d004812_T008 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium dependent protein kinase11 description: calcium dependent protein kinase11
Sequence

MQPDPSGNANAKTKLPQLVTAPAPSSGRPASVLPYKTANVRDHYRIGKKLGQGQFGTTYQ
CVGKADGAEYACKSIPKRKLLCREDYEDVYREIQIMHHLSEHPNVVRIRGAYEDALFVHI
VMELCAGGELFDRIVAKGHYSERAAAKLIKTIVGVVEGCHSLGVMHRDLKPENFLFASTA
EEAPLKATDFGLSMFYKPGDKFSDVVGSPYYVAPEVLQKCYGPEADVWSAGVILYILLCG
VPPFWAETEAGIFRQILRGKLDFESEPWPSISDSAKDLVCNMLTRDPKKRFSAHEVLCHA
WIVDDAVAPDKPIDSAVLSRLKHFSAMNKLKKMALRVIAESLSEEEIGGLKELFKMIDTD
SSGTITFDELKDGLKRVGSELTENEIQALMEAADIDNSGTIDYGEFIAATLHMNKLEREE
NLVSAFSFFDKDGSGFITIDELSQACREFGLDDLHLEDMIKDVDQNNDGQIDYSEFTAMM
RKGNAGATGRRTMRNSLHLNLGELLNPSKT

Transcript Sequence

Transcript ID

Zm00001d004812_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:140809536:140813969:1 gene:Zm00001d004812 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium dependent protein kinase11 description: calcium dependent protein kinase11
Sequence

AACCCGCGGAAATCCTTGGAGGAGTTGCGGAAATTTGTAGCAAGAGCTTTCCTGCTGCGG
CGGCCTCCGCACGGTTTTTGATCCGGGGAGCGCACCTGGGGCGCGCCAATGCAGCCGGAC
CCGAGCGGGAACGCCAATGCGAAGACGAAACTGCCGCAGCTGGTGACGGCGCCGGCTCCG
TCGTCGGGGCGTCCGGCGTCCGTGCTTCCGTACAAGACGGCGAACGTGCGGGACCACTAC
CGCATCGGCAAGAAACTGGGGCAGGGGCAGTTCGGCACCACGTACCAGTGCGTGGGCAAG
GCGGACGGCGCTGAGTACGCATGCAAGTCCATCCCCAAGCGCAAGCTGCTGTGCCGGGAG
GACTACGAGGACGTCTACCGCGAGATCCAGATCATGCACCACCTCTCCGAGCACCCCAAC
GTCGTCCGCATCCGCGGCGCCTACGAGGACGCGCTCTTCGTGCACATCGTCATGGAGCTC
TGCGCCGGCGGCGAGCTCTTCGACCGCATCGTCGCCAAGGGCCACTACAGTGAGCGCGCG
GCTGCGAAGCTCATCAAGACCATTGTCGGGGTCGTGGAGGGATGTCACTCGCTCGGCGTC
ATGCACCGGGACCTCAAGCCGGAGAATTTTCTCTTTGCCAGCACCGCCGAGGAAGCCCCA
CTCAAGGCCACTGACTTTGGGCTTTCCATGTTCTACAAGCCCGGTGATAAATTCTCTGAT
GTCGTTGGAAGTCCATACTATGTTGCACCAGAGGTGCTTCAGAAATGCTATGGTCCAGAA
GCTGATGTGTGGAGCGCAGGAGTAATTCTGTACATTTTGCTTTGTGGTGTGCCCCCGTTT
TGGGCAGAAACTGAGGCTGGAATCTTCAGGCAGATTCTGCGAGGCAAACTTGATTTTGAA
TCTGAACCCTGGCCTAGTATTTCTGATAGTGCTAAGGATCTGGTCTGCAATATGCTTACA
CGGGATCCTAAAAAGAGATTTAGTGCTCATGAGGTTCTCTGTCACGCATGGATTGTTGAC
GATGCCGTGGCACCTGATAAGCCTATTGATTCTGCTGTTCTCTCAAGGCTGAAGCATTTT
TCGGCAATGAACAAGCTCAAGAAGATGGCATTAAGGGTTATTGCTGAAAGCCTGTCTGAG
GAAGAGATTGGAGGCCTCAAGGAGTTGTTCAAGATGATTGATACTGACAGTAGTGGGACT
ATAACATTTGATGAGCTGAAAGATGGCTTGAAAAGGGTAGGCTCTGAATTAACAGAGAAC
GAAATCCAGGCTCTAATGGAAGCAGCTGATATTGATAACAGCGGAACCATCGACTACGGC
GAATTCATTGCAGCTACGTTGCACATGAACAAACTGGAGAGGGAGGAAAACTTGGTTTCA
GCATTCTCGTTTTTTGACAAAGATGGAAGTGGCTTTATAACCATCGATGAGCTGTCACAA
GCATGTCGCGAATTTGGTCTCGATGACCTCCACCTCGAGGATATGATTAAAGATGTTGAC
CAGAACAATGATGGCCAAATCGACTACAGCGAGTTCACGGCGATGATGAGGAAGGGCAAT
GCTGGTGCAACAGGAAGGAGAACCATGAGGAACAGCTTGCACTTGAATCTCGGCGAACTC
TTGAATCCCAGCAAAACCTAGCGCGTTACTGGAAGGCCTTGTCAGGTACATTCCCATGGC
ATCTGAAGTTTTTGGATGCGTTGTCGATCTGCTGGCCTATTCTGAGATGTTGAGTGGTTA
TCCTGTGGTATTACTAAGATGCTGGACAATTTTCGTAGTGCTGGTGGTATCCTCTAGAGA
AGAGGGATGGCTGGCACAATGTGGCTACTATCGCCAACTGCTTTTGTATGTGTAACTATC
GATGTAGATTGACTATGGTCTAAACATCAGTTTAGTTGATATTTCGTTCTCTAAGGTAGT
GTTTGGTTGAAGAGCCAAGTAGAACGGAGCCGTTATGTCCCAGTTTTGTTGCTGTTTGGT
TACAAAGTAACTAGAACGGAATAACTCCAATTAGGGAATATTCTCCTCAGATCCGGAACC
ATTCCGCTCCAAAAAAACAACCGGACGGAGCCGCTCCGTTCCCATCCCGCTCTCACAGTC
ACGCTCCGTTCCGTTCACTCTGCAACCAAACAAAAAATAGAGCCGCTCCGTTCCAGATTA
CCAAACACAGAACAGAGCGGCTCCGTTCATAGAATCAGGGATGAAACAGTTCCGTTCTAC
TTGGCTCCTCAA