Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d004478_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:2:114435461:114439440:-1 gene:Zm00001d004478 gene_biotype:protein_coding transcript_biotype:protein_coding description:Fe-S cluster assembly factor HCF101 chloroplastic
Sequence	ATGCAGACCCTCCGTCCCGCGCCCGCCTCCTTCCTCGTGCCGCCCGCTCCCCAGCTCCTC CGCACAGCGCCGCCACCAGCCCCGAGAGCAAACGCTGCTGCTCTTGCCGCGGCGTCGCAC GGCTGGTTCCCCTCGCCGCACCGTGCCTGCCGGCGCCGTCGACGCGTGACAAGGTCTGCG TCGTCCGGTGCAGCTAGCGCCACCGTGGCCTCCGTGGATGATGCCAAGAAGGACGTGCTC ATAGCGCTCTCCCAAATCATCGATCCTGATTTCGGCACGGACATCGTGTCCTGTGGGTTT ATCAAGGATTTGGAGGTCAGTGAGGCCTTGGAAGAGGTCTCATTTCGTCTGGAGCTGACG ACTCCCGCTTGCCCAATCAAAGACGAGTTCGAACAGAAGGCGAACGAGGTCGTCGCAGCA CTTCCATGGGTCAAGAAGGTAGACGTCACAATGTCTGCGCAACCTGCACAGCCGGTATAT GGAGGGGAGCTTCCAGAAGGGCTACAGAAGATCTCCAACATCATAGCAGTTTCAAGCTGC AAGGGAGGGGTAGGGAAATCAACTGTTGCTGTAAATCTTGCGTACACACTAGCTGGGATG GGAGCTCGGGTTGGAATCTTTGATGCTGACGTCTTTGGCCCAAGCTTACCGACTATGGTT TCTCCTGAAAACCGGTTGCTAGTGATGAACCCAGAAAGCAAATATATTCTTCCGACCGAG TATTTGGGCGTCAAAATGGTGTCCTTCGGGTTTGCTGGACAAGGAAGGGCGATCATGCGG GGTCCAATGGTTTCAGGAGTCATCAATCAGCTGCTGACCACTACTGACTGGGGTGAACTT GACTACCTTGTCATCGATATGCCTCCTGGAACAGGCGACATACACTTAACACTCTGTCAG GTGGCTCCATTGACTGCAGCAGTGATTGTTACCACCCCTCAAAAGCTGGCTTTCATTGAT GTTGCCAAGGGAGTAAGGATGTTCTCTAAACTGAAGGTTCCTTGTGTTGCGGTTGTAGAG AACATGTGCTATTTTGATGCTGATGGAAAACGTTATTACCCATTTGGACAAGGTTCTGGA ACTCAGGTTGTGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACT CTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTG GCTAATACATTTCAGAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAA CAAGTTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAGTGCCA GATTCAGACGAAGAGTTCTTGCTGCATCCAGCAACAGTTAGACGGAATGACCGATCCGCT CAAAGCGTGGATGAATGGACAGGGGAGCAGAAGGTTCAGTACAGTGACATACCAGATGAC ATCGAGCCAGAAGAGATTAGGCCGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGAT GGATTTAGTCAGATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCT CCGAGTCCAGCAGCAGCGTCTGCAGTGGCCTCGTCATGA

Peptide Sequence

PEP ID	Zm00001d004478_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:2:114435461:114439440:-1 gene:Zm00001d004478 transcript:Zm00001d004478_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Fe-S cluster assembly factor HCF101 chloroplastic
Sequence	MQTLRPAPASFLVPPAPQLLRTAPPPAPRANAAALAAASHGWFPSPHRACRRRRRVTRSA SSGAASATVASVDDAKKDVLIALSQIIDPDFGTDIVSCGFIKDLEVSEALEEVSFRLELT TPACPIKDEFEQKANEVVAALPWVKKVDVTMSAQPAQPVYGGELPEGLQKISNIIAVSSC KGGVGKSTVAVNLAYTLAGMGARVGIFDADVFGPSLPTMVSPENRLLVMNPESKYILPTE YLGVKMVSFGFAGQGRAIMRGPMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTLCQ VAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCYFDADGKRYYPFGQGSG TQVVQQFGIPHLFDLPIRPTLSASGDTGIPEVVADPQGDVANTFQNLGACVVQQCAKIRQ QVSTAVSYDRSIKAIRVKVPDSDEEFLLHPATVRRNDRSAQSVDEWTGEQKVQYSDIPDD IEPEEIRPMGNYAVSITWPDGFSQIAPYDQLEMLERLVEAPSPAAASAVASS

Transcript Sequence

Transcript ID	Zm00001d004478_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:114435461:114439440:-1 gene:Zm00001d004478 gene_biotype:protein_coding transcript_biotype:protein_coding description:Fe-S cluster assembly factor HCF101 chloroplastic
Sequence	GTGGGCGGGGGTGAGCTCCTGCCTCCTGCCGCCCTGCTTCGCAATCCTCCTCCACCTCGA CAACGACGCCGTCGCACCTCGCTGCTCGCCGCCACAGCGGTCTCACCTCATCAGCTTGTG TCGGCCACGGGACGCGACCGAGGCGAGGGCGGGCAGTCTTTGTCCGGTCGGCGATGCAGA CCCTCCGTCCCGCGCCCGCCTCCTTCCTCGTGCCGCCCGCTCCCCAGCTCCTCCGCACAG CGCCGCCACCAGCCCCGAGAGCAAACGCTGCTGCTCTTGCCGCGGCGTCGCACGGCTGGT TCCCCTCGCCGCACCGTGCCTGCCGGCGCCGTCGACGCGTGACAAGGTCTGCGTCGTCCG GTGCAGCTAGCGCCACCGTGGCCTCCGTGGATGATGCCAAGAAGGACGTGCTCATAGCGC TCTCCCAAATCATCGATCCTGATTTCGGCACGGACATCGTGTCCTGTGGGTTTATCAAGG ATTTGGAGGTCAGTGAGGCCTTGGAAGAGGTCTCATTTCGTCTGGAGCTGACGACTCCCG CTTGCCCAATCAAAGACGAGTTCGAACAGAAGGCGAACGAGGTCGTCGCAGCACTTCCAT GGGTCAAGAAGGTAGACGTCACAATGTCTGCGCAACCTGCACAGCCGGTATATGGAGGGG AGCTTCCAGAAGGGCTACAGAAGATCTCCAACATCATAGCAGTTTCAAGCTGCAAGGGAG GGGTAGGGAAATCAACTGTTGCTGTAAATCTTGCGTACACACTAGCTGGGATGGGAGCTC GGGTTGGAATCTTTGATGCTGACGTCTTTGGCCCAAGCTTACCGACTATGGTTTCTCCTG AAAACCGGTTGCTAGTGATGAACCCAGAAAGCAAATATATTCTTCCGACCGAGTATTTGG GCGTCAAAATGGTGTCCTTCGGGTTTGCTGGACAAGGAAGGGCGATCATGCGGGGTCCAA TGGTTTCAGGAGTCATCAATCAGCTGCTGACCACTACTGACTGGGGTGAACTTGACTACC TTGTCATCGATATGCCTCCTGGAACAGGCGACATACACTTAACACTCTGTCAGGTGGCTC CATTGACTGCAGCAGTGATTGTTACCACCCCTCAAAAGCTGGCTTTCATTGATGTTGCCA AGGGAGTAAGGATGTTCTCTAAACTGAAGGTTCCTTGTGTTGCGGTTGTAGAGAACATGT GCTATTTTGATGCTGATGGAAAACGTTATTACCCATTTGGACAAGGTTCTGGAACTCAGG TTGTGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACTCTTTCGG CTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTGGCTAATA CATTTCAGAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGTTT CTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAGTGCCAGATTCAG ACGAAGAGTTCTTGCTGCATCCAGCAACAGTTAGACGGAATGACCGATCCGCTCAAAGCG TGGATGAATGGACAGGGGAGCAGAAGGTTCAGTACAGTGACATACCAGATGACATCGAGC CAGAAGAGATTAGGCCGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTA GTCAGATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGAGTC CAGCAGCAGCGTCTGCAGTGGCCTCGTCATGATACAGCAGAAAGAATGTTCAGTTAGCAA GGGGCAAGAAGGCCGACTTTTAGCTCCCAGAAAATTTATAGCTCTGCTACAAATTTTGAA AGAATTTTACAGTACTGTAGAACCATGCTCATTGAATTTTAAAAAAAGGCAGCAGCTTTC GTT