Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004440_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:112115736:112117938:1 gene:Zm00001d004440 gene_biotype:protein_coding transcript_biotype:protein_coding description:Root phototropism protein 3
Sequence

ATGAATGCGTGGGAAGCTACGGAGAGGGAGAACCATGTAACCGAGCGTGGGCTCGTCCCC
GTCAGCACCGGCGACGTGCAGGTGCAGCACGAGCATGGCGGCGCGGCCAAGGCGGACGGC
TTCGTGCGCAGGGACCAGTCATGCCGGTACGCTAGCAGCGACATCCCAAGCGATCTGCTG
GTCAAGGTGGGCGGCGTCAACTTCCACGTCCACAAGCACCCGATGGTCTCTCGGAGCGGC
CGCCTGGCCCGGCTCGTCGACGAGGCGTCGGCCCTGCACGGCCCCGTCGCCGCCACCGTG
GTCGAGCTGCCGGACCTGCCGGGCGGCCACGGCGCGTTCGAGCTGGCCGCCAAGTTCTGC
TACGGCGTGGTGGTGGACATCACGGCCGCCAACGTCGCCGCGCTACGCTGCGCCGCCGAG
TACCTGGAGATGACGGAGGAGGTGGAGGAGGGCAACCTGGCCTTCCGCGCCGAGGCGTTC
CTGAGCTACGTGGTGGCGTCCTCCTGGCGGGACTCCGTCGTCGTCCTCCGCGCCTGCGAG
GGCCTCTCCCCGTGGGCCGACGACCTCCACCTCGTGCGCCGCTGCAGCGAGTCCGTCGCG
GCGAAGGCGTGCACCAACCCCAGGGCCGTGCGCTGGGCCTACGCTGGCAGGACGTCGTCG
TCGCCCAATAAGTCGCCCACGGCCGGCACCGCCGGCAACAGCCAGCAGCAGCCCGGGCCG
CCGGCCGACTGGTGGGTGGAGGACATCTGCGTGCTGAGGATCGATCACTTCGTGCGCGTC
GTCACCGCCGTCCAGGCCAGAGGCATGCGGCCCGACCTCATCGGGGCCGCCATCACGCGC
TATGCCTCCAAATGGCTCTCCTCCGCTGGCCTCCTCGCCAACAAGGACAGCCCTGCATCG
CGTGGCGGCGGCGGCGGCGGTGTGCTCCAAATGATCGTTGCCAGCGAGGGCGATGACGCG
CAGACGGAGACGGAGGCTAGTGAGCAGAGGAGGATCGTCGAGAGCCTGATCAGCATCATC
CCACCGCAGAAGGACTGCCTCTCATGCAGCTTCCTCCTCCGGCTGCTCCGCCTGGCCGTC
GTCCTCAAGGCGGCGCCGGCGCTGGTCACGGAGGTGGAGAAGCACGTGGGCATGCAGCTC
GACCAGGCGAAACTGCTCGACATCCTGGTGCCGTCGTACCCCTACGCCCGCTCCGAGGCC
GCCTACGACGTCGACCTCGTGCAGCGGCTGGTGGAGCAATTCGTGGTGCAGGAGCAGTCC
GGCCGCGACAAGGAGAAGCAGGAACAGCAAAGCTCCAGAGCGCTGCGCATGGCGAGCCTG
ATGGACAGCTACCTCTCCGAGGTGTCCCGGGACCGGAACCTGTCCCTGGGCAAATTCCAG
GCGCTGGCCGAGTCGTTGCCGGAGTCGGCACGCGTGTGCCACGACGAGCTGTACCGCGCC
GTCGACTCCTACCTGAAAGCGCATCCGACGGTGACCGAGCACGAGCGGAAGCGGCTGTGC
CGGGCGGTGGACTGCGGGAAGCTGTCGCGGGAGGCGCGGCTCCACGCGGCGCAGAACGAG
CGGCTACCGCTCCGCGTCGTGGTGCAGGTGCTGCTGTCGGAGCAGGCAAAGATGGCCGGC
GCGCTCGGCAGGGCGGGCAAGAAGGAGGACGACGTCAACGCGCTCAGGCAGGAGGTGGAG
AGCGTGAACGCGAAGTACATGGAGCTGCAGCGCGAGGTGGAGCTCCTGCAACGGCAGGTG
GAGCGCATGCTGCCGCCCTCCGCGGCGGCGAAGCAACATAACGTGTCCGGGTGGAGCAGC
GGATGGAAGAAGCTCGGGAGACTCGGCAGGATTCAGGTGGAGCAGCCGGTGGTGACGGCG
GCAACCGGCGAGACAGCGAACAGGCAACTTCGGCGGAGGAGAAACTCCGCATCGTGA

Peptide Sequence

PEP ID

Zm00001d004440_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:112115736:112117938:1 gene:Zm00001d004440 transcript:Zm00001d004440_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Root phototropism protein 3
Sequence

MNAWEATERENHVTERGLVPVSTGDVQVQHEHGGAAKADGFVRRDQSCRYASSDIPSDLL
VKVGGVNFHVHKHPMVSRSGRLARLVDEASALHGPVAATVVELPDLPGGHGAFELAAKFC
YGVVVDITAANVAALRCAAEYLEMTEEVEEGNLAFRAEAFLSYVVASSWRDSVVVLRACE
GLSPWADDLHLVRRCSESVAAKACTNPRAVRWAYAGRTSSSPNKSPTAGTAGNSQQQPGP
PADWWVEDICVLRIDHFVRVVTAVQARGMRPDLIGAAITRYASKWLSSAGLLANKDSPAS
RGGGGGGVLQMIVASEGDDAQTETEASEQRRIVESLISIIPPQKDCLSCSFLLRLLRLAV
VLKAAPALVTEVEKHVGMQLDQAKLLDILVPSYPYARSEAAYDVDLVQRLVEQFVVQEQS
GRDKEKQEQQSSRALRMASLMDSYLSEVSRDRNLSLGKFQALAESLPESARVCHDELYRA
VDSYLKAHPTVTEHERKRLCRAVDCGKLSREARLHAAQNERLPLRVVVQVLLSEQAKMAG
ALGRAGKKEDDVNALRQEVESVNAKYMELQREVELLQRQVERMLPPSAAAKQHNVSGWSS
GWKKLGRLGRIQVEQPVVTAATGETANRQLRRRRNSAS

Transcript Sequence

Transcript ID

Zm00001d004440_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:112115736:112117938:1 gene:Zm00001d004440 gene_biotype:protein_coding transcript_biotype:protein_coding description:Root phototropism protein 3
Sequence

TAAAGATATAATTTATTCCAAAAAAAACCGCACAAAGCAGAGTGAACATGAATGCGTGGG
AAGCTACGGAGAGGGAGAACCATGTAACCGAGCGTGGGCTCGTCCCCGTCAGCACCGGCG
ACGTGCAGGTGCAGCACGAGCATGGCGGCGCGGCCAAGGCGGACGGCTTCGTGCGCAGGG
ACCAGTCATGCCGGTACGCTAGCAGCGACATCCCAAGCGATCTGCTGGTCAAGGTGGGCG
GCGTCAACTTCCACGTCCACAAGCACCCGATGGTCTCTCGGAGCGGCCGCCTGGCCCGGC
TCGTCGACGAGGCGTCGGCCCTGCACGGCCCCGTCGCCGCCACCGTGGTCGAGCTGCCGG
ACCTGCCGGGCGGCCACGGCGCGTTCGAGCTGGCCGCCAAGTTCTGCTACGGCGTGGTGG
TGGACATCACGGCCGCCAACGTCGCCGCGCTACGCTGCGCCGCCGAGTACCTGGAGATGA
CGGAGGAGGTGGAGGAGGGCAACCTGGCCTTCCGCGCCGAGGCGTTCCTGAGCTACGTGG
TGGCGTCCTCCTGGCGGGACTCCGTCGTCGTCCTCCGCGCCTGCGAGGGCCTCTCCCCGT
GGGCCGACGACCTCCACCTCGTGCGCCGCTGCAGCGAGTCCGTCGCGGCGAAGGCGTGCA
CCAACCCCAGGGCCGTGCGCTGGGCCTACGCTGGCAGGACGTCGTCGTCGCCCAATAAGT
CGCCCACGGCCGGCACCGCCGGCAACAGCCAGCAGCAGCCCGGGCCGCCGGCCGACTGGT
GGGTGGAGGACATCTGCGTGCTGAGGATCGATCACTTCGTGCGCGTCGTCACCGCCGTCC
AGGCCAGAGGCATGCGGCCCGACCTCATCGGGGCCGCCATCACGCGCTATGCCTCCAAAT
GGCTCTCCTCCGCTGGCCTCCTCGCCAACAAGGACAGCCCTGCATCGCGTGGCGGCGGCG
GCGGCGGTGTGCTCCAAATGATCGTTGCCAGCGAGGGCGATGACGCGCAGACGGAGACGG
AGGCTAGTGAGCAGAGGAGGATCGTCGAGAGCCTGATCAGCATCATCCCACCGCAGAAGG
ACTGCCTCTCATGCAGCTTCCTCCTCCGGCTGCTCCGCCTGGCCGTCGTCCTCAAGGCGG
CGCCGGCGCTGGTCACGGAGGTGGAGAAGCACGTGGGCATGCAGCTCGACCAGGCGAAAC
TGCTCGACATCCTGGTGCCGTCGTACCCCTACGCCCGCTCCGAGGCCGCCTACGACGTCG
ACCTCGTGCAGCGGCTGGTGGAGCAATTCGTGGTGCAGGAGCAGTCCGGCCGCGACAAGG
AGAAGCAGGAACAGCAAAGCTCCAGAGCGCTGCGCATGGCGAGCCTGATGGACAGCTACC
TCTCCGAGGTGTCCCGGGACCGGAACCTGTCCCTGGGCAAATTCCAGGCGCTGGCCGAGT
CGTTGCCGGAGTCGGCACGCGTGTGCCACGACGAGCTGTACCGCGCCGTCGACTCCTACC
TGAAAGCGCATCCGACGGTGACCGAGCACGAGCGGAAGCGGCTGTGCCGGGCGGTGGACT
GCGGGAAGCTGTCGCGGGAGGCGCGGCTCCACGCGGCGCAGAACGAGCGGCTACCGCTCC
GCGTCGTGGTGCAGGTGCTGCTGTCGGAGCAGGCAAAGATGGCCGGCGCGCTCGGCAGGG
CGGGCAAGAAGGAGGACGACGTCAACGCGCTCAGGCAGGAGGTGGAGAGCGTGAACGCGA
AGTACATGGAGCTGCAGCGCGAGGTGGAGCTCCTGCAACGGCAGGTGGAGCGCATGCTGC
CGCCCTCCGCGGCGGCGAAGCAACATAACGTGTCCGGGTGGAGCAGCGGATGGAAGAAGC
TCGGGAGACTCGGCAGGATTCAGGTGGAGCAGCCGGTGGTGACGGCGGCAACCGGCGAGA
CAGCGAACAGGCAACTTCGGCGGAGGAGAAACTCCGCATCGTGAGCTGTACACAAGTTTG
AGCAATGGAGTTTTCAGCTTCTTTTAATTACGTGTTGTGGCTGTGATAGACGACATCGTG
TTTGTATAAAAAAACTCGTAGATTGCAGGATACTTAATGTAAGTAATAGTTTGTATATTT
TTCTTGACGAGACA