Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004438_T019
CDS Infomation

cds chromosome:B73_RefGen_v4:2:111770180:111775606:-1 gene:Zm00001d004438 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pullulanase-type starch debranching enzyme1 description: pullulanase-type starch debranching enzyme1
Sequence

ATGTTGCTCCACGCCGGTCCCTCGTTCCTGCTCGCACCACCTCCGCGCTTTGCCGCCGCT
CCGTCGTCAGCTTCGCCGAGGCGATCCAGGACACCGCAATCCTCGCCGCCGACGTCGCAT
TTCGCGCGCCCCGCTGATCCCGTGGCCCAAAGGGTGCGTCCCGTCGCGCCGAGGCCCCCC
ATGGCGACGGCGGAGGAGGGCGCCAGCTCTGACGTCGGCGTCGCCGTCGCCGAGTCCGCA
CAGGGGTTCTTGTTGGATGCGAGGGCTTACTGGGTGACAAAATCCTTGATTGCATGGAAT
ATCAGTGATCAGAAAACTTCTCTCTTCTTATATGCAAGCAGAAATGCTACAATGTGCATG
TCGAGTCAGGATATGAAAGGTTATGATTCCAAAGTTGAGCTGCAACCAGAAAATGATGGA
CTTCCATCCAGTGTGACCCAGAAATTCCCTTTTATCAGCTCTTATAGAGCCTTCAGAATT
CCGAGCTCCGTTGATGTTGCCACCTTGGTGAAATGTCAACTTGCTGTTGCTTCATTTGAT
GCTCATGGGAACAGGCAAGATGTTACTGGGTTGCAACTACCTGGAGTATTGGATGACATG
TTCGCCTACACTGGACCGCTTGGTACTATTTTTAGTGAAGAAGCTGTGAGTATGTACCTA
TGGGCTCCTACAGCACAGGATGTAAGTGTGAGCTTCTATGATGGTCCAGCTGGCCCTTTA
CTGGAAACAGTTCAACTCAACGAGTTAAATGGTGTTTGGAGTGTTACTGGTCCAAGGAAC
TGGGAGAACCGGTATTATCTATATGAAGTCACAGTATATCATCAAACTACAGGAAACATT
GAGAAATGTTTAGCCGCTGATCCTTATGCTAGAGGGCTTTCTGCAAATAGCACACGAACT
TGGTTGGTTGATATTAATAATGAAACATTAAAGCCACTTGCCTGGGATGGATTGGCGGCT
GAAAAGCCAAGGCTTGATTCCTTCTCTGACATAAGCATATATGAATTGCACATTCGTGAT
TTCAGTGCCCATGATAGCACAGTGGACTGTCCTTTCCGAGGAGGTTTCTGTGCATTTACA
TTTCAGGATTCTGTAGGCATAGAACACCTAAAGAAACTATCTGATGCCGGTTTGACTCAT
GTCCATTTGTTGCCAAGCTTTCAATTTGGTGGTGTTGATGACATAAAGAGCAATTGGAAA
TGTGTTGATGAGATTGAACTGTCAAAACTCCCTCCAGGGTCAGATTTGCAACAAGCTGCA
ATTGTGGCTATTCAGGAAGAGGACCCTTATAATTGGGGGTATAACCCTGTGGTTTGGGGC
GTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATCATTGAGTACCGG
CTGATGGTGCAGGCCTTGAATCGCTTAGGTCTTCGAGTTGTCATGGATGTTGTATACAAT
CATCTATACTCAAGTGGCCCTTTTGCCATCACTTCCGTGCTTGACAAGATTGTACCTGGA
TACTACCTCAGAAGGGACTCTAATGGTCAGACTGAGAACAGCGCGGCTGTGAACAATACA
GCAAGTGAGCATTTCATGGTTGATAGATTAATCGTGGATGACCTTCTGAATTGGGCAGTA
AATTACAAAGTTGACGGGTTCAGATTTGATCTAATGGGACATATCATGAAAAAGACAATG
GTAAGTAAGCTCATCTTCAGACTGAATTAA

Peptide Sequence

PEP ID

Zm00001d004438_P019
PEP Infomation

pep chromosome:B73_RefGen_v4:2:111770180:111775606:-1 gene:Zm00001d004438 transcript:Zm00001d004438_T019 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pullulanase-type starch debranching enzyme1 description: pullulanase-type starch debranching enzyme1
Sequence

MLLHAGPSFLLAPPPRFAAAPSSASPRRSRTPQSSPPTSHFARPADPVAQRVRPVAPRPP
MATAEEGASSDVGVAVAESAQGFLLDARAYWVTKSLIAWNISDQKTSLFLYASRNATMCM
SSQDMKGYDSKVELQPENDGLPSSVTQKFPFISSYRAFRIPSSVDVATLVKCQLAVASFD
AHGNRQDVTGLQLPGVLDDMFAYTGPLGTIFSEEAVSMYLWAPTAQDVSVSFYDGPAGPL
LETVQLNELNGVWSVTGPRNWENRYYLYEVTVYHQTTGNIEKCLAADPYARGLSANSTRT
WLVDINNETLKPLAWDGLAAEKPRLDSFSDISIYELHIRDFSAHDSTVDCPFRGGFCAFT
FQDSVGIEHLKKLSDAGLTHVHLLPSFQFGGVDDIKSNWKCVDEIELSKLPPGSDLQQAA
IVAIQEEDPYNWGYNPVVWGVPKGSYASNPDGPSRIIEYRLMVQALNRLGLRVVMDVVYN
HLYSSGPFAITSVLDKIVPGYYLRRDSNGQTENSAAVNNTASEHFMVDRLIVDDLLNWAV
NYKVDGFRFDLMGHIMKKTMVSKLIFRLN

Transcript Sequence

Transcript ID

Zm00001d004438_T019
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:111770180:111775606:-1 gene:Zm00001d004438 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pullulanase-type starch debranching enzyme1 description: pullulanase-type starch debranching enzyme1
Sequence

AAATCAATCAATATTACTACGAAGCTGTCCTCACCGCCTTCTCTCTCCCTCCGAATCCAA
ACGCGGACGCAAATGTTGCTCCACGCCGGTCCCTCGTTCCTGCTCGCACCACCTCCGCGC
TTTGCCGCCGCTCCGTCGTCAGCTTCGCCGAGGCGATCCAGGACACCGCAATCCTCGCCG
CCGACGTCGCATTTCGCGCGCCCCGCTGATCCCGTGGCCCAAAGGGTGCGTCCCGTCGCG
CCGAGGCCCCCCATGGCGACGGCGGAGGAGGGCGCCAGCTCTGACGTCGGCGTCGCCGTC
GCCGAGTCCGCACAGGGGTTCTTGTTGGATGCGAGGGCTTACTGGGTGACAAAATCCTTG
ATTGCATGGAATATCAGTGATCAGAAAACTTCTCTCTTCTTATATGCAAGCAGAAATGCT
ACAATGTGCATGTCGAGTCAGGATATGAAAGGTTATGATTCCAAAGTTGAGCTGCAACCA
GAAAATGATGGACTTCCATCCAGTGTGACCCAGAAATTCCCTTTTATCAGCTCTTATAGA
GCCTTCAGAATTCCGAGCTCCGTTGATGTTGCCACCTTGGTGAAATGTCAACTTGCTGTT
GCTTCATTTGATGCTCATGGGAACAGGCAAGATGTTACTGGGTTGCAACTACCTGGAGTA
TTGGATGACATGTTCGCCTACACTGGACCGCTTGGTACTATTTTTAGTGAAGAAGCTGTG
AGTATGTACCTATGGGCTCCTACAGCACAGGATGTAAGTGTGAGCTTCTATGATGGTCCA
GCTGGCCCTTTACTGGAAACAGTTCAACTCAACGAGTTAAATGGTGTTTGGAGTGTTACT
GGTCCAAGGAACTGGGAGAACCGGTATTATCTATATGAAGTCACAGTATATCATCAAACT
ACAGGAAACATTGAGAAATGTTTAGCCGCTGATCCTTATGCTAGAGGGCTTTCTGCAAAT
AGCACACGAACTTGGTTGGTTGATATTAATAATGAAACATTAAAGCCACTTGCCTGGGAT
GGATTGGCGGCTGAAAAGCCAAGGCTTGATTCCTTCTCTGACATAAGCATATATGAATTG
CACATTCGTGATTTCAGTGCCCATGATAGCACAGTGGACTGTCCTTTCCGAGGAGGTTTC
TGTGCATTTACATTTCAGGATTCTGTAGGCATAGAACACCTAAAGAAACTATCTGATGCC
GGTTTGACTCATGTCCATTTGTTGCCAAGCTTTCAATTTGGTGGTGTTGATGACATAAAG
AGCAATTGGAAATGTGTTGATGAGATTGAACTGTCAAAACTCCCTCCAGGGTCAGATTTG
CAACAAGCTGCAATTGTGGCTATTCAGGAAGAGGACCCTTATAATTGGGGGTATAACCCT
GTGGTTTGGGGCGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATC
ATTGAGTACCGGCTGATGGTGCAGGCCTTGAATCGCTTAGGTCTTCGAGTTGTCATGGAT
GTTGTATACAATCATCTATACTCAAGTGGCCCTTTTGCCATCACTTCCGTGCTTGACAAG
ATTGTACCTGGATACTACCTCAGAAGGGACTCTAATGGTCAGACTGAGAACAGCGCGGCT
GTGAACAATACAGCAAGTGAGCATTTCATGGTTGATAGATTAATCGTGGATGACCTTCTG
AATTGGGCAGTAAATTACAAAGTTGACGGGTTCAGATTTGATCTAATGGGACATATCATG
AAAAAGACAATGGTAAGTAAGCTCATCTTCAGACTGAATTAA