Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004358_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:2:106081091:106087485:-1 gene:Zm00001d004358 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABI3-VP1-transcription factor 28
Sequence

ATGCCATTGCCCAGCGACTCTGGTTCTGGTGCGCGCGCCATGTCGAAGCAGTTCAAGGTC
CTGCTTCCTACTTCCTTCCACAAGCTTCGCATCTCCGACGAGCTCGCCGGTTGCTTCGAC
GCCGGCGAGGGCGAAGGGGCGCCCGAGCCGACGGCCCTCGTGGTCAGTCCGTTCGGGAAG
GTGTGGCGTGTGGAGGTGGTCCGGGACGGCCACGGTGCGTCGCTCGGGCGCGGGTGGGCG
GAGTTCTTGGCCGCGCACGGCGTCGGCATCGGCTGGTTCGTCGTGCTCCGTTATGAGGGC
GGCGGCGCGCTCACCGTCAAGGTGTTCGACACCAGCTTGTGCATTAAGGAGTTCGGCGCT
CCGGCTGCAGTTATGCCATCCAAAAGCTGCAAAAGTATTTTCTGTAAGCCACAATTCATC
AGGATTTTTCATTCGAATCTCTCGGAAAAGATGATGTTGCCTGCTAGGTTTGTGAAAGAT
TACGTCAGTGAAGAGTGCCTAAACAGCCGGATAGCCATCATTTTCAGCCCCATTGCCAAA
TTTTGGCGTGTTGAGCTTAAGAACGATCAATCAGGCATCTTCTTCACAGGTGGCTGGTCA
CAGTTTCTAGACTTCCATGGAATAAAGAATGGTGAAGTTTTGCTCTTGAAATACGAAGGG
AACATGGTTTTCAAATTCAAAGCATTTGGACTTAGTGGATGCCAGAAAGATTTCAAGAAC
CAGAATGCTGGGATTCAACTAAATACTAAAAAACAACAGGAAACACCTCCCATCAGGAAA
CGTAAAAGCAATGATGAGAAGTCAAGCAGTGAAGAAAACAAGAGGCTAAAAACTCCAGTG
ACTTCTCCATCACCTTCTGATCCGTCACTGGAAAAACCCTATCAGATTGGGACATCATCT
TGGATAAAGAAAAGGATCAACACCTATGCACTTGAGCAATTTCTTGCGTTATCAGTGAAG
TTCTGCAACTCGATTGGGTTCCGGATGGCTTGCACAATCACCCTTAAGACAGCAACGAAC
AGCACCAGATCATGGCAGGTGCGTGGTACTGCATACAAGTGGCATCGCTACATCATCGGA
GTGGGCTGGAAGAGCTTCTGCCAGGATAACAGACTCAAGGCAGGCGACCTGTGCACCTTC
AACATCATCGAGACCACGCTGTGGCATGTTACTATCACGCGCTCAGCATTAGCAGCAGAT
ACTTTTAATAAGCAAAAAAAGCCACCTTGTTCATCCAGTAGGGACAAGAAGGGCAGTTCA
AGCAGAGAAGGAGCAAAGAGGCCGAAACCTTCCATGGCACATTTCAGCAAGGTTCAGGTT
CCGCCATCGTACGCAAGACGATGTGCCTACGACGTTGGACCGCCGCCCTGGATACGGAAG
CAGATGAATGCCAGCACAATAAGAAATCGTCTTTGTCTGGCACCGGCCTTCTGCAATCAG
ATTGAGTTGCGGCGACGCTGCGAGATCGTGCTCAAGACCTCGATCAACAGCAATCATTCT
TGGCGGGTTGGTGGTCTCTCGCAGAAGAAGGGTAGTTACATTATTGGGCCCGGTTGGAAA
AAATTCTGCACGGAGAACAGAGTTAAGGTTGGTGATGTCTGCACCTTCAATGTCATCGAA
ACCCAGCTGTGGCATGTCGTCATCACACGCCGTTGCTAA

Peptide Sequence

PEP ID

Zm00001d004358_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:2:106081091:106087485:-1 gene:Zm00001d004358 transcript:Zm00001d004358_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABI3-VP1-transcription factor 28
Sequence

MPLPSDSGSGARAMSKQFKVLLPTSFHKLRISDELAGCFDAGEGEGAPEPTALVVSPFGK
VWRVEVVRDGHGASLGRGWAEFLAAHGVGIGWFVVLRYEGGGALTVKVFDTSLCIKEFGA
PAAVMPSKSCKSIFCKPQFIRIFHSNLSEKMMLPARFVKDYVSEECLNSRIAIIFSPIAK
FWRVELKNDQSGIFFTGGWSQFLDFHGIKNGEVLLLKYEGNMVFKFKAFGLSGCQKDFKN
QNAGIQLNTKKQQETPPIRKRKSNDEKSSSEENKRLKTPVTSPSPSDPSLEKPYQIGTSS
WIKKRINTYALEQFLALSVKFCNSIGFRMACTITLKTATNSTRSWQVRGTAYKWHRYIIG
VGWKSFCQDNRLKAGDLCTFNIIETTLWHVTITRSALAADTFNKQKKPPCSSSRDKKGSS
SREGAKRPKPSMAHFSKVQVPPSYARRCAYDVGPPPWIRKQMNASTIRNRLCLAPAFCNQ
IELRRRCEIVLKTSINSNHSWRVGGLSQKKGSYIIGPGWKKFCTENRVKVGDVCTFNVIE
TQLWHVVITRRC

Transcript Sequence

Transcript ID

Zm00001d004358_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:106081091:106087485:-1 gene:Zm00001d004358 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABI3-VP1-transcription factor 28
Sequence

GTGCAGCGTTCAGCTTCAGCAGCGCCATGCCATTGCCCAGCGACTCTGGTTCTGGTGCGC
GCGCCATGTCGAAGCAGTTCAAGGTCCTGCTTCCTACTTCCTTCCACAAGCTTCGCATCT
CCGACGAGCTCGCCGGTTGCTTCGACGCCGGCGAGGGCGAAGGGGCGCCCGAGCCGACGG
CCCTCGTGGTCAGTCCGTTCGGGAAGGTGTGGCGTGTGGAGGTGGTCCGGGACGGCCACG
GTGCGTCGCTCGGGCGCGGGTGGGCGGAGTTCTTGGCCGCGCACGGCGTCGGCATCGGCT
GGTTCGTCGTGCTCCGTTATGAGGGCGGCGGCGCGCTCACCGTCAAGGTGTTCGACACCA
GCTTGTGCATTAAGGAGTTCGGCGCTCCGGCTGCAGTTATGCCATCCAAAAGCTGCAAAA
GTATTTTCTGTAAGCCACAATTCATCAGGATTTTTCATTCGAATCTCTCGGAAAAGATGA
TGTTGCCTGCTAGGTTTGTGAAAGATTACGTCAGTGAAGAGTGCCTAAACAGCCGGATAG
CCATCATTTTCAGCCCCATTGCCAAATTTTGGCGTGTTGAGCTTAAGAACGATCAATCAG
GCATCTTCTTCACAGGTGGCTGGTCACAGTTTCTAGACTTCCATGGAATAAAGAATGGTG
AAGTTTTGCTCTTGAAATACGAAGGGAACATGGTTTTCAAATTCAAAGCATTTGGACTTA
GTGGATGCCAGAAAGATTTCAAGAACCAGAATGCTGGGATTCAACTAAATACTAAAAAAC
AACAGGAAACACCTCCCATCAGGAAACGTAAAAGCAATGATGAGAAGTCAAGCAGTGAAG
AAAACAAGAGGCTAAAAACTCCAGTGACTTCTCCATCACCTTCTGATCCGTCACTGGAAA
AACCCTATCAGATTGGGACATCATCTTGGATAAAGAAAAGGATCAACACCTATGCACTTG
AGCAATTTCTTGCGTTATCAGTGAAGTTCTGCAACTCGATTGGGTTCCGGATGGCTTGCA
CAATCACCCTTAAGACAGCAACGAACAGCACCAGATCATGGCAGGTGCGTGGTACTGCAT
ACAAGTGGCATCGCTACATCATCGGAGTGGGCTGGAAGAGCTTCTGCCAGGATAACAGAC
TCAAGGCAGGCGACCTGTGCACCTTCAACATCATCGAGACCACGCTGTGGCATGTTACTA
TCACGCGCTCAGCATTAGCAGCAGATACTTTTAATAAGCAAAAAAAGCCACCTTGTTCAT
CCAGTAGGGACAAGAAGGGCAGTTCAAGCAGAGAAGGAGCAAAGAGGCCGAAACCTTCCA
TGGCACATTTCAGCAAGGTTCAGGTTCCGCCATCGTACGCAAGACGATGTGCCTACGACG
TTGGACCGCCGCCCTGGATACGGAAGCAGATGAATGCCAGCACAATAAGAAATCGTCTTT
GTCTGGCACCGGCCTTCTGCAATCAGATTGAGTTGCGGCGACGCTGCGAGATCGTGCTCA
AGACCTCGATCAACAGCAATCATTCTTGGCGGGTTGGTGGTCTCTCGCAGAAGAAGGGTA
GTTACATTATTGGGCCCGGTTGGAAAAAATTCTGCACGGAGAACAGAGTTAAGGTTGGTG
ATGTCTGCACCTTCAATGTCATCGAAACCCAGCTGTGGCATGTCGTCATCACACGCCGTT
GCTAAGCTATGGCTGTTGCAACCAGCATAGCTTGGGTTTGTTGTAACTAGTATGTTCGTT
TGACTTTAATCCGTACCAGCTTTTACTGGTTCTACGGTGTTTTTACCTCTTCTTAGGGAA
TTGGCTGCACTTGCATGTTTCGAAACACTAGTTTGACACTATGCGTGAAATTAAACTAGC
TCACGTTAACAAATCTCCT