Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004300_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:2:101482685:101492216:1 gene:Zm00001d004300 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase MBR2
Sequence

ATGCAACATAATAGGATCACCATGCTGTCTTCTTCAGAGACTTGCCAGCTTGGTTCTAGT
TCTAGCAACCCTGTCATGGATCAGCAGAATTTACTTCCCAACAACTCTAACGTGGATGAA
CAGATTTTACTCCCAAATGCATTAGAGCATGAGGACTACCCACACTATTTGCTCAATAGT
CATGAGGTGGGAATGCCAAGTGGAAGCCTGATTGGTCAGCAAAATACAAGCTTGAGCTTG
TGGGAACCAGCTGGATCTAGCTCAATGGAGTGCTTAGTTGATCATGACAACTTTTTCCAG
GCAAAAAGAGAACATCTTGCCTCTTCTCGGTCTATTGGTGCCCCGTTAAGTATAGAGAGG
AGGAGACATGAAGGCACTAGTTCATTGCCTTCACACAACCTAAACATAGACCTCAACATT
AATCAGGCTGATCAATTTGGCTCTGATGATGTTGATCTTGCACATGGTAATGGACAACCA
AGAGCAAATACTGTCACAGCCCACAGGGGCTCTTTCATAACTGAGCATATTCTGCATCAT
GGAGTTTCTTCGGATGCTATAGGAAATTCTTCCAGGAATGCAGAGTGTTTTGTTGGTGCA
GCAGGCCAAGACAGTCATCATGCAGCCTTTAAGAGAAAGTATCTTGATGGATGTCATGCA
GAGTCTTCTGCTAACGGAAGCTCACGCAATCGTCACCAGAATAATAGTACTCTGCTACCT
CCTCCGACCACCTGTGAAAGTTTTACTATACCCACCGCAACAAATTTTAGTGTTCCGTAC
CATCCTGTGGAGCAGCTAAACCAGAGTACTAATATTGCTGCAAGCTCTACTTTGTCTGAT
CACTATTCTTCATACAGTGATCCACGTGGAAACGAATTCGTGCGAAATACACGGATGCGA
ATAAACCCTAGTGATTATGATCAATCGCTGCCCAGTCTATTACCTGAGGGGAGTTTCAGG
TGCTCGGCTTACCAATCTACACAGCAGCAGTCATCATTTATTCCAGCGCAACCTAGACAA
GTTAGCTCTTCTTCTGGTTCTCATAGTCGATCTCATGTGCCTGCTGTTACTCAGTTTTCA
CAAAATCTTCGCCGTCCATCAACTGTTAGTTTTGGGTCAAGAATTGGGAATTCTTCCACT
TCTGGTTCTACAATACCAATACCTGCTTCACAAGATCCTGGTACAAGCTTGTTGGGAAGC
GATTATCCTGAGCCACTTTTGTTAGGTTCTTTGTTTACAGCTGATTCAACAAATTTCTTA
TCTGCATCTGGAAGCATAAGTAACCAGCAAAATTCTGGATCCAGCTCTAGTTCCATGCTC
AGGCCTGCTGTTAATGTTGGAACACAAGTCCCTGAGTTCAACGTATCTCAGCCAAGTACA
ACTTTAAGAGGTTCATCTGATGTGTTCAGGAGGTCCTTAATTTCTGCTGGCATTTCTCAT
TCTAGAAGTTCAAGCATCCCATTGCAGCACCGTGGAAATTCATCCACATCACATGAGATT
AGGAATCATCAGCCAGGATCAAGCTCTCGTGCACATCAGCAGCACCCCTTAAGACCCGGT
CATTCCTCTGTAGACAGGCAGAGCTCTGGTTACTTGGACCTTCAGTCTTTTATGCAGACC
ATAGCTTCAAGGGAAGGAGGCAGACCAATGTCAGAGATCCGCAATGTCTTCGATCAGATT
CGTCAGGGGAGAAATGCACGATTGGAGGATTTGCTTCTCATTGACCGGTCACTTATTATG
AGACGAGCTAATTTGATTGATAGACATCGGGATATGAGGCTTGATGTGGATAATATGTCC
TATGAGGAATTGCTGGCACTAGGTGAACGCATTGGGTACGTAAACACAGGACTTACTGAA
GAAAAGATTTTGAGTAACTTGAAACAATGGAAATGTGTCTTAAAATCATTGGATGATCCT
CCAACAAGTGTTGAACCATGCTGTATTTGCCAGGAAGACTATGTGGAAGGCGAGGACCTG
GGCAGGCTGGATTGTGGTCATGACTTCCACACCGCATGTATCAAACAATGGCTGGTTATA
AAAAACCTGTGCCCAATCTGCAAGAAAACAGCACTGGACACCTAA

Peptide Sequence

PEP ID

Zm00001d004300_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:2:101482685:101492216:1 gene:Zm00001d004300 transcript:Zm00001d004300_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase MBR2
Sequence

MQHNRITMLSSSETCQLGSSSSNPVMDQQNLLPNNSNVDEQILLPNALEHEDYPHYLLNS
HEVGMPSGSLIGQQNTSLSLWEPAGSSSMECLVDHDNFFQAKREHLASSRSIGAPLSIER
RRHEGTSSLPSHNLNIDLNINQADQFGSDDVDLAHGNGQPRANTVTAHRGSFITEHILHH
GVSSDAIGNSSRNAECFVGAAGQDSHHAAFKRKYLDGCHAESSANGSSRNRHQNNSTLLP
PPTTCESFTIPTATNFSVPYHPVEQLNQSTNIAASSTLSDHYSSYSDPRGNEFVRNTRMR
INPSDYDQSLPSLLPEGSFRCSAYQSTQQQSSFIPAQPRQVSSSSGSHSRSHVPAVTQFS
QNLRRPSTVSFGSRIGNSSTSGSTIPIPASQDPGTSLLGSDYPEPLLLGSLFTADSTNFL
SASGSISNQQNSGSSSSSMLRPAVNVGTQVPEFNVSQPSTTLRGSSDVFRRSLISAGISH
SRSSSIPLQHRGNSSTSHEIRNHQPGSSSRAHQQHPLRPGHSSVDRQSSGYLDLQSFMQT
IASREGGRPMSEIRNVFDQIRQGRNARLEDLLLIDRSLIMRRANLIDRHRDMRLDVDNMS
YEELLALGERIGYVNTGLTEEKILSNLKQWKCVLKSLDDPPTSVEPCCICQEDYVEGEDL
GRLDCGHDFHTACIKQWLVIKNLCPICKKTALDT

Transcript Sequence

Transcript ID

Zm00001d004300_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:101482685:101492216:1 gene:Zm00001d004300 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase MBR2
Sequence

ATATACGGAAGCAGTTTCTAGTTTTCTTCAGTTCGCCGCTGCAGTTTCTAGTTTCCAGCG
GTTCCCACCAGTTGTCTAATAACTTATTGTTGTTGTACGTGAGGTTGACACACTTGGTGT
TGTAAATCATTGCTATTTTTGGGTCATGACTTGTTTTTATTGAAATCAATTGGCTGCCAA
GGGTACACTAAATCTTTGATGCAACATAATAGGATCACCATGCTGTCTTCTTCAGAGACT
TGCCAGCTTGGTTCTAGTTCTAGCAACCCTGTCATGGATCAGCAGAATTTACTTCCCAAC
AACTCTAACGTGGATGAACAGATTTTACTCCCAAATGCATTAGAGCATGAGGACTACCCA
CACTATTTGCTCAATAGTCATGAGGTGGGAATGCCAAGTGGAAGCCTGATTGGTCAGCAA
AATACAAGCTTGAGCTTGTGGGAACCAGCTGGATCTAGCTCAATGGAGTGCTTAGTTGAT
CATGACAACTTTTTCCAGGCAAAAAGAGAACATCTTGCCTCTTCTCGGTCTATTGGTGCC
CCGTTAAGTATAGAGAGGAGGAGACATGAAGGCACTAGTTCATTGCCTTCACACAACCTA
AACATAGACCTCAACATTAATCAGGCTGATCAATTTGGCTCTGATGATGTTGATCTTGCA
CATGGTAATGGACAACCAAGAGCAAATACTGTCACAGCCCACAGGGGCTCTTTCATAACT
GAGCATATTCTGCATCATGGAGTTTCTTCGGATGCTATAGGAAATTCTTCCAGGAATGCA
GAGTGTTTTGTTGGTGCAGCAGGCCAAGACAGTCATCATGCAGCCTTTAAGAGAAAGTAT
CTTGATGGATGTCATGCAGAGTCTTCTGCTAACGGAAGCTCACGCAATCGTCACCAGAAT
AATAGTACTCTGCTACCTCCTCCGACCACCTGTGAAAGTTTTACTATACCCACCGCAACA
AATTTTAGTGTTCCGTACCATCCTGTGGAGCAGCTAAACCAGAGTACTAATATTGCTGCA
AGCTCTACTTTGTCTGATCACTATTCTTCATACAGTGATCCACGTGGAAACGAATTCGTG
CGAAATACACGGATGCGAATAAACCCTAGTGATTATGATCAATCGCTGCCCAGTCTATTA
CCTGAGGGGAGTTTCAGGTGCTCGGCTTACCAATCTACACAGCAGCAGTCATCATTTATT
CCAGCGCAACCTAGACAAGTTAGCTCTTCTTCTGGTTCTCATAGTCGATCTCATGTGCCT
GCTGTTACTCAGTTTTCACAAAATCTTCGCCGTCCATCAACTGTTAGTTTTGGGTCAAGA
ATTGGGAATTCTTCCACTTCTGGTTCTACAATACCAATACCTGCTTCACAAGATCCTGGT
ACAAGCTTGTTGGGAAGCGATTATCCTGAGCCACTTTTGTTAGGTTCTTTGTTTACAGCT
GATTCAACAAATTTCTTATCTGCATCTGGAAGCATAAGTAACCAGCAAAATTCTGGATCC
AGCTCTAGTTCCATGCTCAGGCCTGCTGTTAATGTTGGAACACAAGTCCCTGAGTTCAAC
GTATCTCAGCCAAGTACAACTTTAAGAGGTTCATCTGATGTGTTCAGGAGGTCCTTAATT
TCTGCTGGCATTTCTCATTCTAGAAGTTCAAGCATCCCATTGCAGCACCGTGGAAATTCA
TCCACATCACATGAGATTAGGAATCATCAGCCAGGATCAAGCTCTCGTGCACATCAGCAG
CACCCCTTAAGACCCGGTCATTCCTCTGTAGACAGGCAGAGCTCTGGTTACTTGGACCTT
CAGTCTTTTATGCAGACCATAGCTTCAAGGGAAGGAGGCAGACCAATGTCAGAGATCCGC
AATGTCTTCGATCAGATTCGTCAGGGGAGAAATGCACGATTGGAGGATTTGCTTCTCATT
GACCGGTCACTTATTATGAGACGAGCTAATTTGATTGATAGACATCGGGATATGAGGCTT
GATGTGGATAATATGTCCTATGAGGAATTGCTGGCACTAGGTGAACGCATTGGGTACGTA
AACACAGGACTTACTGAAGAAAAGATTTTGAGTAACTTGAAACAATGGAAATGTGTCTTA
AAATCATTGGATGATCCTCCAACAAGTGTTGAACCATGCTGTATTTGCCAGGAAGACTAT
GTGGAAGGCGAGGACCTGGGCAGGCTGGATTGTGGTCATGACTTCCACACCGCATGTATC
AAACAATGGCTGGTTATAAAAAACCTGTGCCCAATCTGCAAGAAAACAGCACTGGACACC
TAAAAACATGGCTGCCTTTTTCCTTAGGAAAAAGCCGGTAGCGGCAGGGCAAGTGGTTGC
CATCTAACCACACCCTCCCATGACTAGCAAAGTATGTTACACCTTTCCCATCATCAACAT
ACATGTGGGAATCTATACTATAGGTGGTACATGGCACTTGCCTGAAGCCAATGGCTGTAG
ACCATGGAGTTTTATCCTTTGTTTTTTTCAATCTTAGATTTGGGATTTAAAATTTATTCA
ATGACATTTGATTTACTTGGGCAATCTGCGATATTTGCTATCATCATCGATCGCTTATCA
TCTCAGATTTTGTTGTTTGATTTGTGCTGTGACTAGCAGCTTGTAATTCGTTCACCTCGA
TTCTTGAACACGCTGTCGGTTCCTTGGGACGGTTAAT