Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004132_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:85448480:85453083:1 gene:Zm00001d004132 gene_biotype:protein_coding transcript_biotype:protein_coding description:Eukaryotic aspartyl protease family protein
Sequence

ATGACCTCTCAACTCCAGAGCACTTTGCTCCTGCTCCCGCTCTTCGCCGCCGCTGCTTTG
GGCCGCGGCGGCGACGCCTCGACTGCGCCGTCGCTGGAGTTCCACCATCGGTTCTCCGCA
CCGCTGCGGCGGTGGGTGGAGGCCCGAGGGCGCGCGCTCCCTGGCGGGTGGCCGGCTCCC
GGCAGCGCCGCGTACGTCGCCGCCCTTGCCGGGCACGATCGCCACCGGGCGGTGTCGGCA
GCAGGGGGTAGTAGCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTC
AAGGTCAGCAACCTCGGATTTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAG
ACGTTCATGGTGGCGCTGGACACAGGCAGCGATCTCTTCTGGCTGCCTTGCCAGTGTGAC
GGCTGCACGCCTCCAGCCACTGCTGCCTCTGGATCAGCTACATTTTACATCCCTGGTATG
TCGTCAACTAGTAAAGCAGTTCCGTGCAACAGCAACTTCTGTGATCTTCAAAAAGAATGC
TCCACAGCATTGCAATGTCCATACAAGATGGTGTATGTCTCTGCGGGCACATCTTCTTCT
GGATTTTTAGTTGAAGATGTGCTTTATCTCTCAACGGAGAATGCCCATCCTCAAATTCTC
AAGGCACAAATAATGCTTGGTTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCT
GCTCCTAATGGTCTTTTTGGACTTGGAATAGATGAGGTTTCAGTTCCAAGTATTTTAGCT
CAGAAAGGTTTGACATCTAATTCCTTCTCGATGTGCTTTGGTCGTGATGGTATTGGGCGA
ATCAGCTTTGGAGACCAAGAGAGCTCAGACCAAGAAGAGACACCTCTTGACATCAACCGA
CAACATCCCACATACGCCATCACTATAAGCGGGATTACTGTTGGAAATAAACCAACAGAC
ATGGACTTCATTACTATTTTTGACACTGGTACTTCTTTCACATACTTGGCAGACCCAGCG
TATACTTATATAACCCAGAGTTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGAC
TCCAGGATTCCTTTTGAATATTGTTATGATTTGAGCTCTAGTGAAGCAAGATTTCCAATT
CCTGATATAATCCTAAGAACAGTTACTGGAAGTATGTTTCCTGTTATTGATCCAGGGCAA
GTAATCTCCATTCAGGAACATGAGTATGTTTATTGCCTGGCAATCGTCAAGAGCATGAAG
CTCAACATTATTGGACAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGG
AAAATTCTTGGATGGAAGAAATTTAATTGTTATGATACTGATAGTTCCAATCCTCTCTCC
ATCAACTCCCGGAATTCATCAGGTTTCTCACCTTCAACATCTGAGAACTACTCTCCGCAG
GAAGCAAGGAACCCAGCTGGTGTTTCCCAGTTGAGACCACTGAACAATTCAGCACCAGCA
GCGTTATATGATAGCTTGCTCCTGATGCTTATCTTGGTCCACCTGGCTGTAAATTAG

Peptide Sequence

PEP ID

Zm00001d004132_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:85448480:85453083:1 gene:Zm00001d004132 transcript:Zm00001d004132_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Eukaryotic aspartyl protease family protein
Sequence

MTSQLQSTLLLLPLFAAAALGRGGDASTAPSLEFHHRFSAPLRRWVEARGRALPGGWPAP
GSAAYVAALAGHDRHRAVSAAGGSSSDAPPLTFAEGNATLKVSNLGFLHYALVTVGTPGQ
TFMVALDTGSDLFWLPCQCDGCTPPATAASGSATFYIPGMSSTSKAVPCNSNFCDLQKEC
STALQCPYKMVYVSAGTSSSGFLVEDVLYLSTENAHPQILKAQIMLGCGQTQTGSFLDAA
APNGLFGLGIDEVSVPSILAQKGLTSNSFSMCFGRDGIGRISFGDQESSDQEETPLDINR
QHPTYAITISGITVGNKPTDMDFITIFDTGTSFTYLADPAYTYITQSFHAQVQANRHAAD
SRIPFEYCYDLSSSEARFPIPDIILRTVTGSMFPVIDPGQVISIQEHEYVYCLAIVKSMK
LNIIGQNFMTGLRVVFDRERKILGWKKFNCYDTDSSNPLSINSRNSSGFSPSTSENYSPQ
EARNPAGVSQLRPLNNSAPAALYDSLLLMLILVHLAVN

Transcript Sequence

Transcript ID

Zm00001d004132_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:85448480:85453083:1 gene:Zm00001d004132 gene_biotype:protein_coding transcript_biotype:protein_coding description:Eukaryotic aspartyl protease family protein
Sequence

GCAAAGCAGACCAACCCAGCGCAGCGCGCAACACCTCGCCAATTGCGACGCCGCCGCCGT
CACTGTCGCCGCAGGAGTGCGAACCACGCTGCCGCCCGCTCCCGCCGCCCAAACAGCTTT
ATCCGAGCCCCGATTCGCCGGATCACATGCTGCGGCCACCTCTCAAATGACCTCTCAACT
CCAGAGCACTTTGCTCCTGCTCCCGCTCTTCGCCGCCGCTGCTTTGGGCCGCGGCGGCGA
CGCCTCGACTGCGCCGTCGCTGGAGTTCCACCATCGGTTCTCCGCACCGCTGCGGCGGTG
GGTGGAGGCCCGAGGGCGCGCGCTCCCTGGCGGGTGGCCGGCTCCCGGCAGCGCCGCGTA
CGTCGCCGCCCTTGCCGGGCACGATCGCCACCGGGCGGTGTCGGCAGCAGGGGGTAGTAG
CAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAGGTCAGCAACCT
CGGATTTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGTGGC
GCTGGACACAGGCAGCGATCTCTTCTGGCTGCCTTGCCAGTGTGACGGCTGCACGCCTCC
AGCCACTGCTGCCTCTGGATCAGCTACATTTTACATCCCTGGTATGTCGTCAACTAGTAA
AGCAGTTCCGTGCAACAGCAACTTCTGTGATCTTCAAAAAGAATGCTCCACAGCATTGCA
ATGTCCATACAAGATGGTGTATGTCTCTGCGGGCACATCTTCTTCTGGATTTTTAGTTGA
AGATGTGCTTTATCTCTCAACGGAGAATGCCCATCCTCAAATTCTCAAGGCACAAATAAT
GCTTGGTTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGGTCT
TTTTGGACTTGGAATAGATGAGGTTTCAGTTCCAAGTATTTTAGCTCAGAAAGGTTTGAC
ATCTAATTCCTTCTCGATGTGCTTTGGTCGTGATGGTATTGGGCGAATCAGCTTTGGAGA
CCAAGAGAGCTCAGACCAAGAAGAGACACCTCTTGACATCAACCGACAACATCCCACATA
CGCCATCACTATAAGCGGGATTACTGTTGGAAATAAACCAACAGACATGGACTTCATTAC
TATTTTTGACACTGGTACTTCTTTCACATACTTGGCAGACCCAGCGTATACTTATATAAC
CCAGAGTTTTCATGCGCAAGTTCAAGCAAATCGTCATGCTGCTGACTCCAGGATTCCTTT
TGAATATTGTTATGATTTGAGCTCTAGTGAAGCAAGATTTCCAATTCCTGATATAATCCT
AAGAACAGTTACTGGAAGTATGTTTCCTGTTATTGATCCAGGGCAAGTAATCTCCATTCA
GGAACATGAGTATGTTTATTGCCTGGCAATCGTCAAGAGCATGAAGCTCAACATTATTGG
ACAAAATTTCATGACTGGTCTTCGTGTTGTGTTCGATCGGGAAAGGAAAATTCTTGGATG
GAAGAAATTTAATTGTTATGATACTGATAGTTCCAATCCTCTCTCCATCAACTCCCGGAA
TTCATCAGGTTTCTCACCTTCAACATCTGAGAACTACTCTCCGCAGGAAGCAAGGAACCC
AGCTGGTGTTTCCCAGTTGAGACCACTGAACAATTCAGCACCAGCAGCGTTATATGATAG
CTTGCTCCTGATGCTTATCTTGGTCCACCTGGCTGTAAATTAGTTTGGTTCTTAAAATAG
ATACTGTAGAGCTTGACTAGAGGTACACCATAGAGAACAATATTGTTTAGTGGTTACACG
TCCTGTAATAGAGATACTTGTGATGCCGATTTTTTATGGCTCATTGTACAACCATTCCCC
CGTCTTGTTTTCACTCAAAA