Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d004118_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:2:83750563:83790051:1 gene:Zm00001d004118 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 7
Sequence

ATGGTGAAAACCGAGGCGGCGGAGGAGCGGGAGCCCCTCTCCCGGACGCCAGCGGCGGCA
GTAGCGGTCGAGGGTAGCGGCAGAAGGACCGCCACGGCGGTGATCGACCTCAGCAGCAGC
GACTCTGATTCCGACGGCGAGGGTGCGGTCGGAAGCGGTAAGAGGGTGAGGGGCGTTGGT
GGAGACGGCTCCGCGACTAAGCGGGCTAGGGTTTCAGCGGTCGTCGATCTGCCCCCGGGT
TTCCTCGAGCCAATCCCGCCGCCGCCGGTGCCGGTGCCATTGGCAGCTTGTGCGACGAAG
CAGTTCTGGAAGGCTGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAG
TCAGTCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTCAAACGCAACA
AGTCACAAGTGGGCTCTAGGTGCTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAGTT
ATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAAGATATCGATAAA
AAGAAGTCCAGAATGCTTCTTGTTGAAGATGATGGTGGTGGAATGGACCCCGATAAAATG
CGGCAATGCATGTCCTTGGGTTATTCAGCTAAGAGCAAAGTTGCTAGTACTATTGGACAA
TATGGTAATGGTTTCAAGACGAGTACAATGAGGCTTGGTGCTGATGTTTTGGTCTTCTCC
CGTAGTCCTGGAAAATCAGGCAAAAGGCCTACTCAAAGCATTGGCATGCTATCTTATACA
TTTCTTAGGAGCACTGGCAAAGAGGACATCATTGTTCCTATGATTGATTATGAATATAAA
CAAGGCTGGGAAAGAATGGTCCGGACTACATTGGATGATTGGAGCACAAGCTTCCAAACC
ATCATTACATGGTCTCCATATTCAACTGAAGCAGAATTACTTGAACAGTTTAGTTCTATG
AAAGATCGAGGGACACGAATTATTATTTACAATCTTTGGGAGGATGACCAAGGGGACTTG
GAGCTTGATTTTGATGCTGAAATACATGATATTCAACTCAGAGGTGGTAATCGTGATGAG
AAAAATATCCAGATGGCAAATCAGTTCCCAAACTCCAAGCATTACCTCACATATAGGCAT
TCATTGAGAAGTTATGCATCAATTTTGTATTTGCGACTTCCGACTTACTTCCAAATGATT
TTGCGCGGAAAAGAGATTGAACACCATAATATTGTGACTGACATGATGTTGAAGAAAGAG
GTCACCTACAGGCCTGTGGCACCTAATGGACATCCGAAGGATTCAAATATGGTAGCTGAT
GTAACAATTGGGTTTGTAAAAGATGCAAAACATCACATCGACGTTCAAGGATTTAATGTA
TACCACATGAACCGTTTGATAAAGGTACTATTTTTCTTATGGAAATAA

Peptide Sequence

PEP ID

Zm00001d004118_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:2:83750563:83790051:1 gene:Zm00001d004118 transcript:Zm00001d004118_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 7
Sequence

MVKTEAAEEREPLSRTPAAAVAVEGSGRRTATAVIDLSSSDSDSDGEGAVGSGKRVRGVG
GDGSATKRARVSAVVDLPPGFLEPIPPPPVPVPLAACATKQFWKAGDYDGKPLGDGVAQQ
SVSGMDHVRVHPRFLHSNATSHKWALGALAELLDNSLDEVINGATYVNIDVLENDKDIDK
KKSRMLLVEDDGGGMDPDKMRQCMSLGYSAKSKVASTIGQYGNGFKTSTMRLGADVLVFS
RSPGKSGKRPTQSIGMLSYTFLRSTGKEDIIVPMIDYEYKQGWERMVRTTLDDWSTSFQT
IITWSPYSTEAELLEQFSSMKDRGTRIIIYNLWEDDQGDLELDFDAEIHDIQLRGGNRDE
KNIQMANQFPNSKHYLTYRHSLRSYASILYLRLPTYFQMILRGKEIEHHNIVTDMMLKKE
VTYRPVAPNGHPKDSNMVADVTIGFVKDAKHHIDVQGFNVYHMNRLIKVLFFLWK

Transcript Sequence

Transcript ID

Zm00001d004118_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:83750563:83790051:1 gene:Zm00001d004118 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 7
Sequence

GAGGCCACCAATGGTGAAAACCGAGGCGGCGGAGGAGCGGGAGCCCCTCTCCCGGACGCC
AGCGGCGGCAGTAGCGGTCGAGGGTAGCGGCAGAAGGACCGCCACGGCGGTGATCGACCT
CAGCAGCAGCGACTCTGATTCCGACGGCGAGGGTGCGGTCGGAAGCGGTAAGAGGGTGAG
GGGCGTTGGTGGAGACGGCTCCGCGACTAAGCGGGCTAGGGTTTCAGCGGTCGTCGATCT
GCCCCCGGGTTTCCTCGAGCCAATCCCGCCGCCGCCGGTGCCGGTGCCATTGGCAGCTTG
TGCGACGAAGCAGTTCTGGAAGGCTGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGT
GGCTCAGCAGTCAGTCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTC
AAACGCAACAAGTCACAAGTGGGCTCTAGGTGCTTTGGCTGAGCTGCTGGACAATTCTCT
TGACGAAGTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAAGA
TATCGATAAAAAGAAGTCCAGAATGCTTCTTGTTGAAGATGATGGTGGTGGAATGGACCC
CGATAAAATGCGGCAATGCATGTCCTTGGGTTATTCAGCTAAGAGCAAAGTTGCTAGTAC
TATTGGACAATATGGTAATGGTTTCAAGACGAGTACAATGAGGCTTGGTGCTGATGTTTT
GGTCTTCTCCCGTAGTCCTGGAAAATCAGGCAAAAGGCCTACTCAAAGCATTGGCATGCT
ATCTTATACATTTCTTAGGAGCACTGGCAAAGAGGACATCATTGTTCCTATGATTGATTA
TGAATATAAACAAGGCTGGGAAAGAATGGTCCGGACTACATTGGATGATTGGAGCACAAG
CTTCCAAACCATCATTACATGGTCTCCATATTCAACTGAAGCAGAATTACTTGAACAGTT
TAGTTCTATGAAAGATCGAGGGACACGAATTATTATTTACAATCTTTGGGAGGATGACCA
AGGGGACTTGGAGCTTGATTTTGATGCTGAAATACATGATATTCAACTCAGAGGTGGTAA
TCGTGATGAGAAAAATATCCAGATGGCAAATCAGTTCCCAAACTCCAAGCATTACCTCAC
ATATAGGCATTCATTGAGAAGTTATGCATCAATTTTGTATTTGCGACTTCCGACTTACTT
CCAAATGATTTTGCGCGGAAAAGAGATTGAACACCATAATATTGTGACTGACATGATGTT
GAAGAAAGAGGTCACCTACAGGCCTGTGGCACCTAATGGACATCCGAAGGATTCAAATAT
GGTAGCTGATGTAACAATTGGGTTTGTAAAAGATGCAAAACATCACATCGACGTTCAAGG
ATTTAATGTATACCACATGAACCGTTTGATAAAGGTACTATTTTTCTTATGGAAATAAAT
CTTGAAGAGTGACATAAATCATTTTTTTTTCAAAACTACATGATGCTTACTGATTAAATA
ACATAAGTGTCTTTTTAGCCTTTCTGGAGAGTGTGGACTGCTGCTGGAAGTGGAGGTCGT
GGTGTCATAGGTGTTCTTGAGGCAAACTTCATTGAACCTGCTCATGATAAGCAAGACTTT
GAGCGGACAACACTTCTAGCAAGACTTGAAGCACGATTAGTTCAAATGCAGAAGGATTAC
TGGTCTGGGAATGCTCATCGAATAGGATATGTTGCACCACGATTTGGCAGGAATACTGAG
GCAGGAGATGGAGAAGACTCTCCTGAAAACACAGCAAGTGCACAACCATCACCTTATCAT
TCTGGTAAAGGGTACACACATGCAAAAGACTTGAGTAATAATATCAAAAAGGGTGGTAAG
GCAAGCACATCATTTGGTATTCAGCAAAGAGCTGAGAAGTCCGCAAGGACTAAACGATCT
ACGAAGTCAATACTGCACGGGCTGTCTGATAGTGATAATAGTGATTCTGAGTTTATGGGC
ACCCTGTCGAGGTCAAGATCGCACACCCTGAAGACAAACCGAAAATTGTTTCAAAATGGC
AGTACTGGTTTGATAACACCTCAATCCAGTGGACTGATAGAAAGAGAGAGGGTCAGAACT
AAATCCCAGCCATTGGACCCAAAAGCAACAAGCAACGGAGATCTACATACTATGGATGAG
TATCAGTCTGTTATCATGCAGTTAAGGGATGAAAATTCATCACTAAAGGAAAGATTATCA
AAGATGGAAGAATCGATGTCGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTG
ACAGAGAGGGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
CTGATCGACATCTTCTCAGAAGAAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGG
AAGAAGCTGAAGGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCC
AGGAAAGGCCGCAAAGTTTGAGGAAATAAACTAGTAACGTTGCTCCTTGCGGGCATCATC
TTAGATTAGAGTTTGAGGGTTAGCTGCATCTACATTGTGCTCCAGGTCGTTTGGAGCATC
CCATGTACAGCCAAGCAGTAGTGACCACTGAAGAACACGTTATGCTTTATCTGCAGTTAG
CAGTTACCCTACAAGAAATAACTTGCGTAATTATCTTTTTATCCTGTTACGTCATCTCTT
G