Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d004099_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:2:82711523:82715534:-1 gene:Zm00001d004099 gene_biotype:protein_coding transcript_biotype:protein_coding description:U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Sequence	ATGGAGCCGCTGCCTATCCCTCATCCTCCAGCACCGCCTCCTGCTCTCACGTCCGCCCTC GCCCACCTACGCTCCCTTCTCTCCGCCGCATCCTCTGCCCTCGCCGCTCTACCCTCTCCT CTCCAACCGCACCCGATCACTCCCATCGCTTGTATCCCTTCACCTCAGTCTACCACCACA AAACCTCCACTCCCGCCGCCGGTCACCGCTATCAACCTCCCGCTCCCAGCTGCCCCAGCT CCCTACTCCGACTGCCCTGCCGTCGTCCGTTTAAGGCCTTCCCCAACCTCCACGGCCATC TCCCTCCCCGCCTTCCTCGCTGCCGTATGCGCAGATTTCTCCTCTTCCACTACCGGCCCG AGCCCCTCCCATCCGCCCCGCATCCTGCCATCGGAGCTAAGCCTCCTGCGCCGGGAGTTG GACTCCTGGGCTACGGGAGGCCACCACCTCCCGGGGTCGTACTCCTACGCTGTAGCCCGG GTAGGGGCCTCGTTCTGCTCGGATGTGATGCCACGGTGGGAGGCCGAGCTGCGGCAGTGG GTGCTTGAGAACTCACCGAGGTACGGGGTCAAGGTCAATGTCACGGATGCGGACCATATC TTGGTGCTATTATGTCTCTTGTTGAAGGCGATGGCACTGGAGGCCAGGTACTTGCTGGAG GGGATGCAGAATGTCGACAACGAGGGGCTAGGCTTTGATCCCAGGGCCATGAGGTTTGAG TGCCCTAGGCTGGTCGAGGGCGTCTCGTGGTTAGGCGCACAGCTTGGGGTTCTGTATGGT GAAAGCAATGGGAAACTATTTATGCTTGCATCTGTGAAGGAGGCTGTGCTACAGATGGCA TATTGCTTGGCTCTCTGTGCAGGAGATGGTGCTGCAAGTGTAGGAGGGAGTGATGCTGGA GATGTTGTGGCAGGCCCTGTTTTTCTTTCTCAGGTTGCTGCTTCCATTGTGGCATTGCAT GAGAGGTTCTACTTGGAGAAGACCAAGGCGTTGCAAGCTCAACGCCCGTCAAAATATCAG CTATTACTTGAGTATTCACAAGCACTGGAACGAGGGATTTTGGAGCGATCAAACAGACCA AACTACAGGGCTGTTCTGGAGTATGATGGGATTCTGTCACGGCGAGTAGAGAACAAGGAA TCTGCTAGAGCCAAGACAAAGGAGGAACTTTTAGCTGAAGAACGTGATTACAAACGGAGA AGAACATCTTACCGTGGCAAGAAAGTGAATAGAAACCCTACAGAGATACTAAGAGACATA ATTGATGAACATATGGAGGAAATCAGACAGGCAGGTGGCATTGGTTGTCTTGTGGAAGCT CCTGCTGATATTGCTTGGAATGAGCTGAAGGGCAACTCTCACAGCGGTGCATATCATGGA AGTTATGATTTTGCAAGCAGCTCTTCTCATGATAAGACAGCTTTGGCTTCTCGGTCATCT AACTGTGACAACTCATGTGCTGAATCTTTGGGAAGATTTTCATCAAGGAGCAGTGACACA AGAGATTCATACAATAACTCAGGGTGCGAAACTCATAGAAACCATTACCAGTATATATCT GAGAAGGAAATGGGTGGAATATAG

Peptide Sequence

PEP ID	Zm00001d004099_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:2:82711523:82715534:-1 gene:Zm00001d004099 transcript:Zm00001d004099_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Sequence	MEPLPIPHPPAPPPALTSALAHLRSLLSAASSALAALPSPLQPHPITPIACIPSPQSTTT KPPLPPPVTAINLPLPAAPAPYSDCPAVVRLRPSPTSTAISLPAFLAAVCADFSSSTTGP SPSHPPRILPSELSLLRRELDSWATGGHHLPGSYSYAVARVGASFCSDVMPRWEAELRQW VLENSPRYGVKVNVTDADHILVLLCLLLKAMALEARYLLEGMQNVDNEGLGFDPRAMRFE CPRLVEGVSWLGAQLGVLYGESNGKLFMLASVKEAVLQMAYCLALCAGDGAASVGGSDAG DVVAGPVFLSQVAASIVALHERFYLEKTKALQAQRPSKYQLLLEYSQALERGILERSNRP NYRAVLEYDGILSRRVENKESARAKTKEELLAEERDYKRRRTSYRGKKVNRNPTEILRDI IDEHMEEIRQAGGIGCLVEAPADIAWNELKGNSHSGAYHGSYDFASSSSHDKTALASRSS NCDNSCAESLGRFSSRSSDTRDSYNNSGCETHRNHYQYISEKEMGGI

Transcript Sequence

Transcript ID	Zm00001d004099_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:82711523:82715534:-1 gene:Zm00001d004099 gene_biotype:protein_coding transcript_biotype:protein_coding description:U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Sequence	GAGGCAATAAAAAAAGGGCCGCAGGCTCTTCTCCGACCCCGTACCAGCGGCGGCGGCCGA ACCTCCCCTTGAAACCCTCCGACGACCGGATCGACTCCGCTCCGCTCAAATGGAGCCGCT GCCTATCCCTCATCCTCCAGCACCGCCTCCTGCTCTCACGTCCGCCCTCGCCCACCTACG CTCCCTTCTCTCCGCCGCATCCTCTGCCCTCGCCGCTCTACCCTCTCCTCTCCAACCGCA CCCGATCACTCCCATCGCTTGTATCCCTTCACCTCAGTCTACCACCACAAAACCTCCACT CCCGCCGCCGGTCACCGCTATCAACCTCCCGCTCCCAGCTGCCCCAGCTCCCTACTCCGA CTGCCCTGCCGTCGTCCGTTTAAGGCCTTCCCCAACCTCCACGGCCATCTCCCTCCCCGC CTTCCTCGCTGCCGTATGCGCAGATTTCTCCTCTTCCACTACCGGCCCGAGCCCCTCCCA TCCGCCCCGCATCCTGCCATCGGAGCTAAGCCTCCTGCGCCGGGAGTTGGACTCCTGGGC TACGGGAGGCCACCACCTCCCGGGGTCGTACTCCTACGCTGTAGCCCGGGTAGGGGCCTC GTTCTGCTCGGATGTGATGCCACGGTGGGAGGCCGAGCTGCGGCAGTGGGTGCTTGAGAA CTCACCGAGGTACGGGGTCAAGGTCAATGTCACGGATGCGGACCATATCTTGGTGCTATT ATGTCTCTTGTTGAAGGCGATGGCACTGGAGGCCAGGTACTTGCTGGAGGGGATGCAGAA TGTCGACAACGAGGGGCTAGGCTTTGATCCCAGGGCCATGAGGTTTGAGTGCCCTAGGCT GGTCGAGGGCGTCTCGTGGTTAGGCGCACAGCTTGGGGTTCTGTATGGTGAAAGCAATGG GAAACTATTTATGCTTGCATCTGTGAAGGAGGCTGTGCTACAGATGGCATATTGCTTGGC TCTCTGTGCAGGAGATGGTGCTGCAAGTGTAGGAGGGAGTGATGCTGGAGATGTTGTGGC AGGCCCTGTTTTTCTTTCTCAGGTTGCTGCTTCCATTGTGGCATTGCATGAGAGGTTCTA CTTGGAGAAGACCAAGGCGTTGCAAGCTCAACGCCCGTCAAAATATCAGCTATTACTTGA GTATTCACAAGCACTGGAACGAGGGATTTTGGAGCGATCAAACAGACCAAACTACAGGGC TGTTCTGGAGTATGATGGGATTCTGTCACGGCGAGTAGAGAACAAGGAATCTGCTAGAGC CAAGACAAAGGAGGAACTTTTAGCTGAAGAACGTGATTACAAACGGAGAAGAACATCTTA CCGTGGCAAGAAAGTGAATAGAAACCCTACAGAGATACTAAGAGACATAATTGATGAACA TATGGAGGAAATCAGACAGGCAGGTGGCATTGGTTGTCTTGTGGAAGCTCCTGCTGATAT TGCTTGGAATGAGCTGAAGGGCAACTCTCACAGCGGTGCATATCATGGAAGTTATGATTT TGCAAGCAGCTCTTCTCATGATAAGACAGCTTTGGCTTCTCGGTCATCTAACTGTGACAA CTCATGTGCTGAATCTTTGGGAAGATTTTCATCAAGGAGCAGTGACACAAGAGATTCATA CAATAACTCAGGGTGCGAAACTCATAGAAACCATTACCAGTATATATCTGAGAAGGAAAT GGGTGGAATATAGGGTCAGAAGGTGAAGTAGATCAAATTTACTCTTACCCGCAAGAGAAT TACACACCCAATGGCTATAAGTTTAAGAAGGATGTCTCAAACCACCGTGATGAATCAAAT GATTGTACATGGCCAATACAGTCACAAAGATCCCCTGTGACAGAATATTCTCACTTGCCA GGAGAAGGGTGCTTTGATAGAAGTAGAGCTAGTCAGAACTCAGAAGTGACATAAATCATT ATCTATAACTCAAGATTAATTCAGTGATAGATATGATCCCCAAAGCGCATATTCTGATGG AGATCATCCGACAACCATGCTTGGTGATGCTACTAAAGGAAAGCATGAGATATACCATGA TGAAGTACATTGACATGCACATTATGAAAGGAAGCGTGATTATAATCACTGCAGGGCAAT ACAGATTATTGTTGCTTCATATCCAGTAGCTAAATAATAAGGGCTCTGTGGTATTAGCCT TCCGCCGTATCCTTTTACTACGAACTGACAGAAATTTCAGCGGTCTGTTCGCTTCAATCG ATCACATTGAGTTCTTTTTTC