Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d004021_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:76077655:76080443:1 gene:Zm00001d004021 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:violaxanthin de-epoxidase1 description: violaxanthin de-epoxidase1
Sequence	ATGATGTCGCGACAGTGTGCAAACCGCATCTTTCTTACCGGAGGTTCCAGCTTCCTCCAT GGCCTCAAATCTAGAGTTGCATCCAGTAGGAGTCACGGCACCGTCAGACTCAACTGGCGC TGCGTGAGAACTAATCTCTGGAGGGCCGAGCGCCTTGGTGTCAAGGCTACTCCGTCTGAG CATATCATTGCAGTACTGCAAGCGTCAGATATTTTCAGTGGCATCAGGAAATGGAGCAAG TTGCAATTGGTCGCCATGACAGGGGTGATGGCATGTGTAGTTCTGGTAGTCCCTTCTTCT GATGCAGTCGATGCTCTCAAGACATGCACTTGCCTGCTAAAGGAATGCAGAATAGAGCTG GCTAAATGCATAGCGAACCCATCCTGTGCAGCAAACGTAGCATGCTTGAACACGTGCAAC AATCGACCTGATGAAACTGAATGTCAGATAAAATGCGGAGACCTGTTTGAGAACAGTGTA GTCGATGAATTCAATGATTGTGCTGTTTCACGCAAGAAATGTGTTCCAAAAAAATCCGAC GTCGGCGAGTTCCCCGTCCCCGATCCATCTTCGCTGGTTAAGAGCTTCAACATGGCAGAT TTTAATGGCAAATGGTACATTTCAAGTGGCTTAAACCCGACGTTTGACACATTCGATTGT CAGCTTCACGAGTTTCATGTCGAGGGAGACAAATTGATCGCGAACATCACATGGAGAGTC CGCACCCCAGACTCTGGCTTCTTTACCAGGTCAACCGTGCAGCGTTTTGTGCAGGACCCA TCGCAGCCCGGCATACTCTACAACCATGACAATGAGTTCCTGCACTATCAAGATGACTGG TACATTATCTCATCCAAGGTTGAGAACAAGGATGACGACTACATATTTGTGTACTATCGT GGGCGAAATGACGCATGGGATGGTTATGGTGGTTCTGTATTGTACACAAGAAGTAAAACT GTACCTGAAACAATAATACCGGAGCTGGAAAGAGCTGCAAAGAGCGTAGGTCGGGACTTC TCGACGTTCATCATGACCGACAACACCTGTGGTCCTGAGCCTCCTCTTGTGGAGAGAATC GAGAAAACTGTGGTGGAAGGAGAGAAGACCATCGTCAGGGAGGTGAAGGAGATCGAGGAG GAGGTTGAGGAGCTGGAGAAGGAGGAGGCGTCACTGTTTCAGAAGCTGGCAGAAGGTCTC ATGGAGGTGAAACAGGATTTCATGAACTTCTTGCAGGGGCTGAGCAAGGAGGAGATGGAG CTGTTGGATCAGCTCAACATGGAAGCGACTGAAGTTGAGCAAGTCTTCAGCCGTGCACTA CCGTTGAGGAAGCTAAGGTAG

Peptide Sequence

PEP ID	Zm00001d004021_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:76077655:76080443:1 gene:Zm00001d004021 transcript:Zm00001d004021_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:violaxanthin de-epoxidase1 description: violaxanthin de-epoxidase1
Sequence	MMSRQCANRIFLTGGSSFLHGLKSRVASSRSHGTVRLNWRCVRTNLWRAERLGVKATPSE HIIAVLQASDIFSGIRKWSKLQLVAMTGVMACVVLVVPSSDAVDALKTCTCLLKECRIEL AKCIANPSCAANVACLNTCNNRPDETECQIKCGDLFENSVVDEFNDCAVSRKKCVPKKSD VGEFPVPDPSSLVKSFNMADFNGKWYISSGLNPTFDTFDCQLHEFHVEGDKLIANITWRV RTPDSGFFTRSTVQRFVQDPSQPGILYNHDNEFLHYQDDWYIISSKVENKDDDYIFVYYR GRNDAWDGYGGSVLYTRSKTVPETIIPELERAAKSVGRDFSTFIMTDNTCGPEPPLVERI EKTVVEGEKTIVREVKEIEEEVEELEKEEASLFQKLAEGLMEVKQDFMNFLQGLSKEEME LLDQLNMEATEVEQVFSRALPLRKLR

Transcript Sequence

Transcript ID	Zm00001d004021_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:76077655:76080443:1 gene:Zm00001d004021 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:violaxanthin de-epoxidase1 description: violaxanthin de-epoxidase1
Sequence	AGCTAGCAGCGTCCCTGCTGCTCCGCGCCACACCTCTCCGCTTCATTCCTATCCGTCTCC CCTGCTCTATCGTCGTCCTCCTCCGTCGGGCCGGAGGAGCGTCTCTTTGTCGGCGCAGCG TGCAGAGCACCGCAGATTCAGAGACACGATGATGTCGCGACAGTGTGCAAACCGCATCTT TCTTACCGGAGGTTCCAGCTTCCTCCATGGCCTCAAATCTAGAGTTGCATCCAGTAGGAG TCACGGCACCGTCAGACTCAACTGGCGCTGCGTGAGAACTAATCTCTGGAGGGCCGAGCG CCTTGGTGTCAAGGCTACTCCGTCTGAGCATATCATTGCAGTACTGCAAGCGTCAGATAT TTTCAGTGGCATCAGGAAATGGAGCAAGTTGCAATTGGTCGCCATGACAGGGGTGATGGC ATGTGTAGTTCTGGTAGTCCCTTCTTCTGATGCAGTCGATGCTCTCAAGACATGCACTTG CCTGCTAAAGGAATGCAGAATAGAGCTGGCTAAATGCATAGCGAACCCATCCTGTGCAGC AAACGTAGCATGCTTGAACACGTGCAACAATCGACCTGATGAAACTGAATGTCAGATAAA ATGCGGAGACCTGTTTGAGAACAGTGTAGTCGATGAATTCAATGATTGTGCTGTTTCACG CAAGAAATGTGTTCCAAAAAAATCCGACGTCGGCGAGTTCCCCGTCCCCGATCCATCTTC GCTGGTTAAGAGCTTCAACATGGCAGATTTTAATGGCAAATGGTACATTTCAAGTGGCTT AAACCCGACGTTTGACACATTCGATTGTCAGCTTCACGAGTTTCATGTCGAGGGAGACAA ATTGATCGCGAACATCACATGGAGAGTCCGCACCCCAGACTCTGGCTTCTTTACCAGGTC AACCGTGCAGCGTTTTGTGCAGGACCCATCGCAGCCCGGCATACTCTACAACCATGACAA TGAGTTCCTGCACTATCAAGATGACTGGTACATTATCTCATCCAAGGTTGAGAACAAGGA TGACGACTACATATTTGTGTACTATCGTGGGCGAAATGACGCATGGGATGGTTATGGTGG TTCTGTATTGTACACAAGAAGTAAAACTGTACCTGAAACAATAATACCGGAGCTGGAAAG AGCTGCAAAGAGCGTAGGTCGGGACTTCTCGACGTTCATCATGACCGACAACACCTGTGG TCCTGAGCCTCCTCTTGTGGAGAGAATCGAGAAAACTGTGGTGGAAGGAGAGAAGACCAT CGTCAGGGAGGTGAAGGAGATCGAGGAGGAGGTTGAGGAGCTGGAGAAGGAGGAGGCGTC ACTGTTTCAGAAGCTGGCAGAAGGTCTCATGGAGGTGAAACAGGATTTCATGAACTTCTT GCAGGGGCTGAGCAAGGAGGAGATGGAGCTGTTGGATCAGCTCAACATGGAAGCGACTGA AGTTGAGCAAGTCTTCAGCCGTGCACTACCGTTGAGGAAGCTAAGGTAGCTGCAGAGCAA AGGACTTGGAGAAAACAAGCCATCAAGTACTGGCCGAAACGGATTCTATTTGCCACAGCA GTACCCACAGTAGAGATTGTTGAACAGATACAACAAACATTTTTAATTTTCTTTTCTTTT TCTTTTCTTTTCTTTTCTTTTCTTTGTTTACCCTTTTCTGTGGTCAAAACACATGCCTAC GTTAGCCCTATTTGTAAAGCATCAAGAGACAACGTAACTTTTTCTTGCCAAACAGAGAAA AAAAACAAGTGTACTTAAGACTA