Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d003922_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:2:68239457:68247954:1 gene:Zm00001d003922 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger CCCH domain-containing protein 41
Sequence	ATGCTCAAAGAGTCATTATCACCAGTGCTGGATGCTGACAGAATAGAAGTTCCTTCACCA AAAGAAGAAAATAATTCGACAAATTCTGAAGCTGCTACAGATAGCGAAGACATTGAAATC AGCGATGATGATGACCGCAACCACAAGCACCGAAGACGGGAGGCTAAACAACAATCTGAT GACAATACAGAGGAGCAACATCCAGGGCCACCTCTTAAAAAAAGGAGTAGGGTTGCTGGT AATGGAGAACCTTTTGGTGGAGCTGGCTCTCAAGGTGAAGTACAAAAGGATTTTGTGCCA AATTTTAAAAGGCGTTCTGGAGCAGGAGGTCACACTCGAGCACCTAGAGCGAACCAATCC TTCCGAGCTGATTCATCGGCTTCTGCTGCTACTCGCCCTCCTATGACACGAGGAAGAGGA CGTAATGTTGCACCTTGGACTCACCATGATCCAAGATTTAACTCACTTGATATGATGGAT TTTGCATCCCAGATGGCTTCACAAGGACCACCTGCACATCCTAGCTTATTTATGGGCACT GCATTGCCATGTGGTCCATATGGATTTATGCCTGGAATGCCTCATGGGATTTTGGATCCA ATCCACCCACTTGGAATGCAAGGCCCTATTCAGCGCTCAGTATCTCCTTTGATTGATCTT GGCATGCCTCGTCAACGTTGCAGAGACTTTGAGGAACGTGGATTTTGCTTGAGAGGGGAT ATGTGCCCCATGGAGCATGGTGTAAATAGAATTGTTGTTGATGATATGCAGAGTCTTTCT CAATTCAATCTTCCAGTATCAGTTCCAAATGCTCAAGGATTGGGAATCCAAAATGAGGGA GGAACCAGTTCTGTTAACTTATCCAACCTTGGAGGGAGTAAAAGCGTTCCTGTAAAAGAT GTGAAATCTGGTGTAGCAAGTGATGCATTAAAGCCAAATGGAAGTGCTGTTTCAGCTGTT GCTGATGCTGATGTATATGATCCTGATCAACCTCTTTGGAACAATGAGCACCGAGAAGCA TCATCTACTGGCTTTATAAATAAAGATGTTGGACCGTGGAATGCTGAATCATCCGGCTAT GAAATGGGGCAGGAGCATTCAAACCAGGTTTTGGCTTCTGATGGTTCTCAGAGTTTGAAG TCTTCTGTTTGGGGGCGAATAACATCAAAAAGAAAACCAGGAGGTAATAACACAGCTAAA AGTACACCAACGAGTATCACTGGAAACCAAAAAAGTGATTATGATGACATGGCTATCAGC ACGGGCCAAGTAAAATCTGCTGCTAAGGATACCAATGGTCAACCCAATTCAAGAATATAT GGAGATGTGGGCTGGCAAAGTAATCGAGCTGCTCAGAAAGCATCCCGTACATTATATGTA AATGGAATTCCCCAAGAAAGCAACAGATGGGAGACCCTTCTATCGCATTTTCAGAAGTTT GGTCAAGTAATAGATATTTATATTCCATCTAACAGTGAAAAAGCTTTTGTCCAGTTCTCG AGAAGGGAAGAAGCTGAAGCTGCCCTAAAAGCTCCAGATGCTGTTATGGGAAACCGCTTT ATAAAGCTATGGTGGGCCAACAGAGATAGAGTTCTTGATGTGGGAGAGGGCAGAATCTCT CAAAAGCCTTCCCAGTTGTCTACTACGCCGGCTAATTCTTACCCCAACAGAGTCAAGGAA AATGTTCAACCAACAGCTCCAGGGCCCAGCTCTGGATCTTCTGCTGAACTGTTGAGTTCT GGTACACCAAGTTCTAGAATGCTGCCAGCAAGTAGTGCGAAAGCAGTACCACCCCATGCT CCAAAAAGGCAAGAAAGCCTAGAACTATTGGAAGAACTACGTAAAAAACAAGAGATCTTA GCTCAGAAGCGTGATGAGTTCCGCCGGCAGTTAGAGAAACTTACAAAACAAAAAGGTTCA GCAAATTCAGTTAAGCATGCAGAGACTGGTGGAAAAGAAATTGCTTCTAATGATGCATCA CAAGTAAAGGATGCAGCGTCCACGAGGGTTGAAGGGTCACAGGAGACAGCTGGTTCATTG GAAAAGAGAAGTTCTGGAGAGTTTGCCTTGTTGTCTCAAAAGTCTGCTGCGATATCCACG CAGAAACCAGTGGTGGTTACAAAACAGACTACTCTGCCAGCACCTCCTCAGAATAGGTTT AAGCTTGACAATCGGACCACATCATTCAGAATTCTTCCACCTTTGCCACCTGAAATTGCA AATGAATCTGTCTTGGCAGACCATTTCTCATCATTTGGGGATCTTTCGTCGGTTGTCCTG GAAGATACTGAAGCCCATAACCTTGATGCAACCCTAAAACCTTCGCTGAGTTGCTCAGCT TGTGTGACTTACACAACACGACAATCAGCTGAGAAAGCATTTATTGGTGGTAAATCTTGC AAAGGACACACACTACGATTTATGTGGTTGACAGCATCTCCTGGCTCAAATAACCATTAT AGGCATCAGAATACCTCAGTTCATGTGAGGCCCTCTACTATCCCTGGCCATACTCAAAGC ATATCATCTGAGTCCCCCAGCCCTGTTGGGAAAGTATCATCTCTTGCTACATCTGTTATG GTAGCCATTCCTCATAATAAATCCATCTCAACTGTGGAAAATACAAAGACTTCTCCAGCG GGAGTTTCCAAAGTTTCATGTGGTAGCTCCTCTCTATCATCAAATGATAAGTGTCCTTCT GAATGTGGTTCCACAAGGAATGTTATCTCAGATTCTGACGTTCCACAATGA

Peptide Sequence

PEP ID	Zm00001d003922_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:2:68239457:68247954:1 gene:Zm00001d003922 transcript:Zm00001d003922_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger CCCH domain-containing protein 41
Sequence	MLKESLSPVLDADRIEVPSPKEENNSTNSEAATDSEDIEISDDDDRNHKHRRREAKQQSD DNTEEQHPGPPLKKRSRVAGNGEPFGGAGSQGEVQKDFVPNFKRRSGAGGHTRAPRANQS FRADSSASAATRPPMTRGRGRNVAPWTHHDPRFNSLDMMDFASQMASQGPPAHPSLFMGT ALPCGPYGFMPGMPHGILDPIHPLGMQGPIQRSVSPLIDLGMPRQRCRDFEERGFCLRGD MCPMEHGVNRIVVDDMQSLSQFNLPVSVPNAQGLGIQNEGGTSSVNLSNLGGSKSVPVKD VKSGVASDALKPNGSAVSAVADADVYDPDQPLWNNEHREASSTGFINKDVGPWNAESSGY EMGQEHSNQVLASDGSQSLKSSVWGRITSKRKPGGNNTAKSTPTSITGNQKSDYDDMAIS TGQVKSAAKDTNGQPNSRIYGDVGWQSNRAAQKASRTLYVNGIPQESNRWETLLSHFQKF GQVIDIYIPSNSEKAFVQFSRREEAEAALKAPDAVMGNRFIKLWWANRDRVLDVGEGRIS QKPSQLSTTPANSYPNRVKENVQPTAPGPSSGSSAELLSSGTPSSRMLPASSAKAVPPHA PKRQESLELLEELRKKQEILAQKRDEFRRQLEKLTKQKGSANSVKHAETGGKEIASNDAS QVKDAASTRVEGSQETAGSLEKRSSGEFALLSQKSAAISTQKPVVVTKQTTLPAPPQNRF KLDNRTTSFRILPPLPPEIANESVLADHFSSFGDLSSVVLEDTEAHNLDATLKPSLSCSA CVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSNNHYRHQNTSVHVRPSTIPGHTQS ISSESPSPVGKVSSLATSVMVAIPHNKSISTVENTKTSPAGVSKVSCGSSSLSSNDKCPS ECGSTRNVISDSDVPQ

Transcript Sequence

Transcript ID	Zm00001d003922_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:68239457:68247954:1 gene:Zm00001d003922 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger CCCH domain-containing protein 41
Sequence	ATGCTCAAAGAGTCATTATCACCAGTGCTGGATGCTGACAGAATAGAAGTTCCTTCACCA AAAGAAGAAAATAATTCGACAAATTCTGAAGCTGCTACAGATAGCGAAGACATTGAAATC AGCGATGATGATGACCGCAACCACAAGCACCGAAGACGGGAGGCTAAACAACAATCTGAT GACAATACAGAGGAGCAACATCCAGGGCCACCTCTTAAAAAAAGGAGTAGGGTTGCTGGT AATGGAGAACCTTTTGGTGGAGCTGGCTCTCAAGGTGAAGTACAAAAGGATTTTGTGCCA AATTTTAAAAGGCGTTCTGGAGCAGGAGGTCACACTCGAGCACCTAGAGCGAACCAATCC TTCCGAGCTGATTCATCGGCTTCTGCTGCTACTCGCCCTCCTATGACACGAGGAAGAGGA CGTAATGTTGCACCTTGGACTCACCATGATCCAAGATTTAACTCACTTGATATGATGGAT TTTGCATCCCAGATGGCTTCACAAGGACCACCTGCACATCCTAGCTTATTTATGGGCACT GCATTGCCATGTGGTCCATATGGATTTATGCCTGGAATGCCTCATGGGATTTTGGATCCA ATCCACCCACTTGGAATGCAAGGCCCTATTCAGCGCTCAGTATCTCCTTTGATTGATCTT GGCATGCCTCGTCAACGTTGCAGAGACTTTGAGGAACGTGGATTTTGCTTGAGAGGGGAT ATGTGCCCCATGGAGCATGGTGTAAATAGAATTGTTGTTGATGATATGCAGAGTCTTTCT CAATTCAATCTTCCAGTATCAGTTCCAAATGCTCAAGGATTGGGAATCCAAAATGAGGGA GGAACCAGTTCTGTTAACTTATCCAACCTTGGAGGGAGTAAAAGCGTTCCTGTAAAAGAT GTGAAATCTGGTGTAGCAAGTGATGCATTAAAGCCAAATGGAAGTGCTGTTTCAGCTGTT GCTGATGCTGATGTATATGATCCTGATCAACCTCTTTGGAACAATGAGCACCGAGAAGCA TCATCTACTGGCTTTATAAATAAAGATGTTGGACCGTGGAATGCTGAATCATCCGGCTAT GAAATGGGGCAGGAGCATTCAAACCAGGTTTTGGCTTCTGATGGTTCTCAGAGTTTGAAG TCTTCTGTTTGGGGGCGAATAACATCAAAAAGAAAACCAGGAGGTAATAACACAGCTAAA AGTACACCAACGAGTATCACTGGAAACCAAAAAAGTGATTATGATGACATGGCTATCAGC ACGGGCCAAGTAAAATCTGCTGCTAAGGATACCAATGGTCAACCCAATTCAAGAATATAT GGAGATGTGGGCTGGCAAAGTAATCGAGCTGCTCAGAAAGCATCCCGTACATTATATGTA AATGGAATTCCCCAAGAAAGCAACAGATGGGAGACCCTTCTATCGCATTTTCAGAAGTTT GGTCAAGTAATAGATATTTATATTCCATCTAACAGTGAAAAAGCTTTTGTCCAGTTCTCG AGAAGGGAAGAAGCTGAAGCTGCCCTAAAAGCTCCAGATGCTGTTATGGGAAACCGCTTT ATAAAGCTATGGTGGGCCAACAGAGATAGAGTTCTTGATGTGGGAGAGGGCAGAATCTCT CAAAAGCCTTCCCAGTTGTCTACTACGCCGGCTAATTCTTACCCCAACAGAGTCAAGGAA AATGTTCAACCAACAGCTCCAGGGCCCAGCTCTGGATCTTCTGCTGAACTGTTGAGTTCT GGTACACCAAGTTCTAGAATGCTGCCAGCAAGTAGTGCGAAAGCAGTACCACCCCATGCT CCAAAAAGGCAAGAAAGCCTAGAACTATTGGAAGAACTACGTAAAAAACAAGAGATCTTA GCTCAGAAGCGTGATGAGTTCCGCCGGCAGTTAGAGAAACTTACAAAACAAAAAGGTTCA GCAAATTCAGTTAAGCATGCAGAGACTGGTGGAAAAGAAATTGCTTCTAATGATGCATCA CAAGTAAAGGATGCAGCGTCCACGAGGGTTGAAGGGTCACAGGAGACAGCTGGTTCATTG GAAAAGAGAAGTTCTGGAGAGTTTGCCTTGTTGTCTCAAAAGTCTGCTGCGATATCCACG CAGAAACCAGTGGTGGTTACAAAACAGACTACTCTGCCAGCACCTCCTCAGAATAGGTTT AAGCTTGACAATCGGACCACATCATTCAGAATTCTTCCACCTTTGCCACCTGAAATTGCA AATGAATCTGTCTTGGCAGACCATTTCTCATCATTTGGGGATCTTTCGTCGGTTGTCCTG GAAGATACTGAAGCCCATAACCTTGATGCAACCCTAAAACCTTCGCTGAGTTGCTCAGCT TGTGTGACTTACACAACACGACAATCAGCTGAGAAAGCATTTATTGGTGGTAAATCTTGC AAAGGACACACACTACGATTTATGTGGTTGACAGCATCTCCTGGCTCAAATAACCATTAT AGGCATCAGAATACCTCAGTTCATGTGAGGCCCTCTACTATCCCTGGCCATACTCAAAGC ATATCATCTGAGTCCCCCAGCCCTGTTGGGAAAGTATCATCTCTTGCTACATCTGTTATG GTAGCCATTCCTCATAATAAATCCATCTCAACTGTGGAAAATACAAAGACTTCTCCAGCG GGAGTTTCCAAAGTTTCATGTGGTAGCTCCTCTCTATCATCAAATGATAAGTGTCCTTCT GAATGTGGTTCCACAAGGAATGTTATCTCAGATTCTGACGTTCCACAATGAGGTACGCTG CACTGAATATGGAAATAACCTGTTCGTAAAATATTAAAGGTGATTTTATTGCTGATGACT AAATTAGGTGTTTTGAACAACAGCACAATCCCAAAACCATGTTCTTTAGGAACCTCTATG AACCTCAGTTGCAATATATTTGTAAAATCAGTAAAAGTATTATCATGAAAAAGGTTTCCA GTATCTTTTATAAGTCCAGTCAAAATATTCATGGAGATATTATTACCAATGAGGCAATGA TAAAAAGTTGCTTACAAGCATTCCGAAACTTTTTTTTTTTGGGAAAACGCAGGAGAACTG CGCCTCAATATATTAAGAAGAAGAGATAAATCCAGATCAAAGAGATCTGGACAATATATT CCGAAACTTTTTTTTTACTGGAGGGAGTGCGTCCTAGGACATCACTTTGTTATTGCAGGT TTTTAGCATTGATTTTTCACATGTCTATCTGCCAAATAGTTGGTGAAAAGGAAATAACTG ACGTTAGCAAGGCATGCCATAATCTAAGTACCAACACTACGACTTACTCTAGTATTATGC AGTAAACAATGATTTGAACTAGCCTGTTCCCTCCAGTGGCCCGCCTTTGTATATGCATGT TTAACCAACCACCCAGCCCTGCAATCAATATACAGGGATGCTTATCACCCAGCCCTGCAA TCAATATACAGGGATGCTTATCAGATAGGTTGGCTGTGGAGTTTTCATAATACAATAAGG GAATCTATAACATTACATTATATTCATGTTAGATAATAGTTTTATTTTCTTAATAATTAT TTCCAAGATCCTTATATCACCTTTAGTGGTTTATAAGTCAGACTACAATGATTGGTATGT GAATTTTGCGAAAGGGTAACATAGTAGGCTTGATGTCCAATTTCCAAGACTTGCTGTACA TGTAGGGTTATCATGTTAAAATTGATCCTGTATGCTCTTCACTTCTATCAACAATGTGGT ACAAGTCTTCTGTAGTTGTCTTGTACAAGGATTAATCATTTAAGCTCCCAATGGTTAGTG TCTAGTATCTATTAACTCAGTGAGCAACTAATCAAAATCTTTCTCCCTTAGCTTAGACAT CTATTTACATCAGGTTAAATAGTGATGTTGGTTTGTATTTTGTGTGTATGTGTGTTTCTA TCTCTAGTTTTATGAGTGTAGCGTCCCTTTATTTTGCCTCCACAAGTCCACATTTACGTT AGGCTGTTCCATAAAAAAATACTCCAGATAAATATTGTGGGTAAGCTCCTGCTGAAACTC ATCGCTCATTGATGTCAATGTGTGGTGCAATAAATAATCATGGATTCGGGGCTGGGGGTT GTTTGGTACCCCTCTGCTGTTCTGCAGTTTGTGCAGTTTGTTTTCTTCTTTTTCTGTCTA GGCCTTTTATTGGCACCTTGTTCTGGGTCTATTTTAGACCTTTTTCTCCTTTTCTTAATA TATAAGATGCGCAGTTCTCCTGCGCGTTCGATAAAAAATAATAATCATGGATTCTTGTTT TATGTATTTTTATTTGTATGTGATACACTGATGTTAACATGGTCATCTCATATGTGAGCT TAGCCTATCAACTGCCAAAATTGATTTAGAGACATTTGCTTGATAGAAGTCCACTATGAC ATATGAAACAACTACTAGTGTGCAAGATTGTCTCATGAAACCTGGTTCCATCCAAGTTTC TTTATCTCCTTGCCTTGTCTCCACGCAGTTATGGGATTTGTTATTTTAGTTCACAAGCAG TGAGACACCTCAGCTTCTGACAGATCGGAAAGGGGAATTATGCATGTTTTTGGCTTTTCA CTCATCTCACTGTATGTGGGCCAGTCAAGACTACAGATGACATGGATGGATGGAATCATG GAATCTTTTTTTTCCTGGGGCACAACACTTCTTTTTTGTTTGATACATGGCACGAGACTT TTTTTTTAGAACAACGCAGGAGATCTGCGAGTTATTTCATTAAGAAAGAAAGATAAGAGG CTACCAAAAGGTGAGCCCCCAGTACAATGGTTGGCTATGACCTGAGGGCCTATACGATGT GCTCAAGGCCACCAAAACACAGACCCCACACCCAACCAATTTCCAAGGTTGAACTGACGT GCCAGGAGCTCTTGGAGGGCACTGGCACCTGCCCTACACCAAATGGCACCTTCATAAGCA GCTTCCTGAATAACAGCAGGAACAAAAGGCCTTCTCCCCTCCAAGACAGGTGTATTTCGG TGCTTCCAAATTTCCCAAGTAACCAAAATAATTAAAGAATTGAGACCTTTTCGATGCTCC TTAGGAAATGCTCTAACAACTCTTCTCCTCCAGCTTAGGAATCTGTCGTTGGGCTGAGGT GAGAGAGTCGGCCACTGCAGAGTCCACGCTTCTTTAGCAAAAACGAGACTTGTAATTTGT ACAATCCACTCTTGGTTTTGTTTGATTAAACTATTTGTTTTTTTTTGCTAGGAACCCTGT CTCATTAGTTTTTATTCATTAGTTTGTCCCTTGGTATCCCATTTTTTTAAGAAAATGGTG TGTTAATCTGTTTTTTCCACAGGCTTAATGCTATCTGGACGAGGTGGTGTTATGAATCTT GATTTGGTGGCTCGGCTATTTCATAGGTCTACACCTAGTCAAAATCCCATCACATTTGAA GTTATTGGAAGACCTTTTGAAAACTTTGGTGTTTAATCGTAGGGCAGCGCGGTTAAGGCT GTAAAAAGAAAAAAAAGAGAATGTTTAAAGAAATATGGGTTCAAAAGCATACTGGAAGTG GAGGCTTTCTCGGTAACCACCGTCTAATCATCTCATTGTTCACGGAGACTGAGTGGTGCT AGGTTATTTGTACACTTCATTTTGGGGGCGCATCGTGCTGAAAGCAGTTGGTAATATGCT AATTCTGTAGTTTGTAGCTCCTGCTGAAATCAGCTTTGTGGATTATGTTGTGAGCACGAT GAACATCAAACTCTCGCAAGTCCCATCGAGGCATCTTGTCGAAAAACTTCTGCTGTGCAT ACTGAACTAAATTTTGTGCCGGTGTATCATCT