Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003869_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:64103998:64104966:1 gene:Zm00001d003869 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isopentenyl transferase2 description: isopentenyl transferase2
Sequence

ATGGAGCACGGTGCCGTCGCCGGGAAGCCCAAGGTGGTGTTCGTGCTCGGCGCCACAGCG
ACAGGGAAGTCGAAGCTCGCCATCGCCCTCGCCGAGCGCTTCAACGGTGAGGTTATCAAC
GCTGACAAAATCCAGGTCCACGATGGCGTGCCCATCATCACGAACAAGGTCACAGAGGAA
GAGCAGGGCGGGGTGCCCCACCACCTGCTCAGCGTCCGCCACCCGGACGCCGACTTCACT
GCGGAGGAGTTCCGACGTGAGGCGGCCAGCGCCGTGGCCCGCGTGCTCTCGGCGGGCCGC
CTCCCCGTCGTGGCAGGCGGGTCCAACACCTACATCGAGGCACTGGTGGAAGGCGACGGC
GCCGCCTTCCGCGCGGCGCACGACCTCCTCTTCGTCTGGGTGGACGCGGAGCAGGAGCTG
CTGGAGTGGTACGCCGCGCTGCGCGTGGACGAGATGGTGGCCCGCGGGCTGGTGAGCGAG
GCTCGCGCGGCGTTCGGCGGCGCCGGGGTTGACTACAACCATGGCGTGCGCCGCGCCATC
GGCCTGCCGGAGATGCACGCCTACCTGGTGGCGGAGCGCGAGGGCGTCGCTGGGGAGGCC
GAGCTCGCGGCCATGCTGGAACGCGCGGTGCGCGAGATCAAGGACAACACCTTCCGCCTC
GCGCGCACGCAGGCGGAGAAGATCCGGCGCCTCAGCACGCTCGACGGCTGGGACGTCCGC
CGCATCGACGTGACCCCCGTGTTCGCGCGCAAGGCCGATGGCACTGAGTGCCACGAGCTG
ACTTGGAAGAAGCAGGTGTGGGAGCCGTGCGAGGAGATGGTGAGGGCTTTCCTCGAGCCG
TCCCTGACTGCCGTTCCAGGTGTTGCAGTAACTGAAGAAGGGAACGCCGGCGTCGTCGCT
ACTGCTGCACCCGCTGGTGATGTCGTCGTCCCAACTGGCGATGTCGTCACCGCCGTGGCT
GATGCATAA

Peptide Sequence

PEP ID

Zm00001d003869_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:64103998:64104966:1 gene:Zm00001d003869 transcript:Zm00001d003869_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isopentenyl transferase2 description: isopentenyl transferase2
Sequence

MEHGAVAGKPKVVFVLGATATGKSKLAIALAERFNGEVINADKIQVHDGVPIITNKVTEE
EQGGVPHHLLSVRHPDADFTAEEFRREAASAVARVLSAGRLPVVAGGSNTYIEALVEGDG
AAFRAAHDLLFVWVDAEQELLEWYAALRVDEMVARGLVSEARAAFGGAGVDYNHGVRRAI
GLPEMHAYLVAEREGVAGEAELAAMLERAVREIKDNTFRLARTQAEKIRRLSTLDGWDVR
RIDVTPVFARKADGTECHELTWKKQVWEPCEEMVRAFLEPSLTAVPGVAVTEEGNAGVVA
TAAPAGDVVVPTGDVVTAVADA

Transcript Sequence

Transcript ID

Zm00001d003869_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:64103998:64104966:1 gene:Zm00001d003869 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isopentenyl transferase2 description: isopentenyl transferase2
Sequence

ATGGAGCACGGTGCCGTCGCCGGGAAGCCCAAGGTGGTGTTCGTGCTCGGCGCCACAGCG
ACAGGGAAGTCGAAGCTCGCCATCGCCCTCGCCGAGCGCTTCAACGGTGAGGTTATCAAC
GCTGACAAAATCCAGGTCCACGATGGCGTGCCCATCATCACGAACAAGGTCACAGAGGAA
GAGCAGGGCGGGGTGCCCCACCACCTGCTCAGCGTCCGCCACCCGGACGCCGACTTCACT
GCGGAGGAGTTCCGACGTGAGGCGGCCAGCGCCGTGGCCCGCGTGCTCTCGGCGGGCCGC
CTCCCCGTCGTGGCAGGCGGGTCCAACACCTACATCGAGGCACTGGTGGAAGGCGACGGC
GCCGCCTTCCGCGCGGCGCACGACCTCCTCTTCGTCTGGGTGGACGCGGAGCAGGAGCTG
CTGGAGTGGTACGCCGCGCTGCGCGTGGACGAGATGGTGGCCCGCGGGCTGGTGAGCGAG
GCTCGCGCGGCGTTCGGCGGCGCCGGGGTTGACTACAACCATGGCGTGCGCCGCGCCATC
GGCCTGCCGGAGATGCACGCCTACCTGGTGGCGGAGCGCGAGGGCGTCGCTGGGGAGGCC
GAGCTCGCGGCCATGCTGGAACGCGCGGTGCGCGAGATCAAGGACAACACCTTCCGCCTC
GCGCGCACGCAGGCGGAGAAGATCCGGCGCCTCAGCACGCTCGACGGCTGGGACGTCCGC
CGCATCGACGTGACCCCCGTGTTCGCGCGCAAGGCCGATGGCACTGAGTGCCACGAGCTG
ACTTGGAAGAAGCAGGTGTGGGAGCCGTGCGAGGAGATGGTGAGGGCTTTCCTCGAGCCG
TCCCTGACTGCCGTTCCAGGTGTTGCAGTAACTGAAGAAGGGAACGCCGGCGTCGTCGCT
ACTGCTGCACCCGCTGGTGATGTCGTCGTCCCAACTGGCGATGTCGTCACCGCCGTGGCT
GATGCATAA