Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003851_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:62503506:62507698:-1 gene:Zm00001d003851 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable alpha-amylase 2
Sequence

ATGGGCCAGATGATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGATGGAATC
ATCAAGAATGGAAGGGAAATCCTATTTCAGGCTTTTAACTGGGAATCCAATAAGCACAAC
TGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTG
TGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGGCTATCTACCACAGAATCTGTAC
TGCCTTGACTCATGTTATGGTTCCCTCCATGAGCTAAAATTGTTGCTTCATAAAATGAGC
GAACATAATGTAAGGGCTATGGCAGATGTTGTTATCAACCATCGAATTGGAACTACTCAA
GGATCCAATGGCATGTATAATCGTTATGATGGCATCCCAGTATCATGGGATGAACATGCT
GTTACATCTTGTTCTGGCGGGAAGGGAAACAAGAGCACTGGGGATAACTTTGATGGGGTT
CCCAATATAGATCATACACAACCATTTGTACGCAAAGATATTATCGAATGGTTGATCTGG
CTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGGTTATGCAGCC
AAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTTTGCAGTTGGGGAATACTGG
GATAGCTGTGAATATAGCCCCCCTGACTACCGACTGAACTATAATCAAGCCAGATATCCA
TAG

Peptide Sequence

PEP ID

Zm00001d003851_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:62503506:62507698:-1 gene:Zm00001d003851 transcript:Zm00001d003851_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable alpha-amylase 2
Sequence

MGQMISGDKSDEQTARDDGIIKNGREILFQAFNWESNKHNWWSILEEKVTDLAESGFTSV
WLPPPTQSLSREGYLPQNLYCLDSCYGSLHELKLLLHKMSEHNVRAMADVVINHRIGTTQ
GSNGMYNRYDGIPVSWDEHAVTSCSGGKGNKSTGDNFDGVPNIDHTQPFVRKDIIEWLIW
LRKSVGFQDFRFDFTKGYAAKFVKEYIEESKPLFAVGEYWDSCEYSPPDYRLNYNQARYP

Transcript Sequence

Transcript ID

Zm00001d003851_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:62503506:62507698:-1 gene:Zm00001d003851 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable alpha-amylase 2
Sequence

GTCGCCGAGAAAACTCAAATCGAATCCCCAAATCCTTCGCCGGCGATTCCACTCCAAGTC
TCGATCGGAAAAGCGCAGAAGAGCAACGGAATCCCAATTCCCAAAGGGACAAGGCAAAGC
TAACTTCTCCTTCTTCCCATCCTTCCTCATCCCGTCGGATCAATGCCAGCGGGAGCAAAT
TCGAAGCCGCTGCCGAAATTGTGGCCGGTTGACCGGTGTTTCCAGCCCATCCCCCCGTTG
CACGCGGCGAGGTAGAGGAGTTTCCGCCGTCAACTCCATCCGATCGGCGTAGGGTCGCGG
GGTGCCGACAACTTTGGTCCCCGCTCCCCACTTGGGCGCCACGGTCGCTGCGCATGCCGC
GGGCTCCCGCGCCCACTGGACCCCGGTAACACCGCACGGCGCCTCGCTCCGCGTGCCCGC
CCGCTGCCAGCTCCATGCCAACCGCCGCGGCTACATAGGTAGCTGCGCGCTGGCTGAAGG
CTCCTGCAGTGCGCGTTGAAGGCTTTCGCTGCGTGTTGTGCGTTCTGCTTGAATTTCGGT
CTGAGTTTGGATGGGCCAGATGATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGA
CGATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGGCTTTTAACTGGGAATCCAA
TAAGCACAACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTT
TACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGGCTATCTACCACA
GAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCCATGAGCTAAAATTGTTGCTTCA
TAAAATGAGCGAACATAATGTAAGGGCTATGGCAGATGTTGTTATCAACCATCGAATTGG
AACTACTCAAGGATCCAATGGCATGTATAATCGTTATGATGGCATCCCAGTATCATGGGA
TGAACATGCTGTTACATCTTGTTCTGGCGGGAAGGGAAACAAGAGCACTGGGGATAACTT
TGATGGGGTTCCCAATATAGATCATACACAACCATTTGTACGCAAAGATATTATCGAATG
GTTGATCTGGCTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGG
TTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTTTGCAGTTGG
GGAATACTGGGATAGCTGTGAATATAGCCCCCCTGACTACCGACTGAACTATAATCAAGC
CAGATATCCATAGGCAGAGGATTATTAATTGGATAGATAACACTGGAGGACTTTGTGCCG
CATTTGATTTCACGACAAAGGGCATTCTTCAGGAAGCTGTCAAAGGAGAGTTGTGGCGTT
TGCGAGATTCAGAAGGAAAACCACCTGGTGTGATGGGATGGTGGCCTTCAAGATCAGTTA
CATTTATTGAAAATCATGACACTGGGTCCACTCAGGGTCATTGGCCTTTTCCGTCAGATC
ATATTATGGAGAAATTATTTATTTTTTAGACTACCTTGCTATTGTGTTTTTGTAGAAGTC
CATTTGTTGATCTGACACATTTAAGATCTTTAGGGATATGCTTATATACTCACCCACCCT
GGCATCCCCACGGTGTTCTATGATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAA
ATTGCTAAACTGATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAA
ATTCTGGAGGTTGGGTCAGATCTGTACTCAGCAATCATCGACGATAAGTTGTGCATGAAG
ATCGGGGACGGCTCGTGGTGCCCAAGTGATCCAGAGTGGAGGCTGGCAGTCTCTGGTGAC
AGATATGCTGTGTGGCACAAGTGAAGCATATAAGTGCCCTCGATACAGTTTATTTCTGCT
CTCAGGAACAGGAGTAATTAGCATGTTAGCTGAATAACAGCACGGTAAAACATGCCAAAA
ATGACCCTCTTCGAGGTTTTACCTGTACAAGAGGAGTGCCTAAATGCAATGCTTAATTAG
AAATACGTGAGATCGTGCGGCTGGTCCCGAGGTGAGACATACATTTTGCTAATCGCAACA
ACTATGGATTACCTGCAAAAGAAATATATATAGGGCATGT