Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003848_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:62255756:62263760:1 gene:Zm00001d003848 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGCGCTGCTGCGGCCAATGCAGGGGCGTCGCCGGAGTCGAGCGGCAGCGGGCGGCCT
GGAGCGGGGGCGATGGGGCGCTACGAGCTCGTCCGCAGCGACGACACGCCTGCCATCGCC
GTGGATCTGGAGGCTGGCACCGCCGCGCCACGCGACGACTACCCCAAACGCCGCGGGTCC
GCGCCGTCTCCGGCGCCGGCGCCGACTCGGCAGCGCCTCGTCTCGCTCGACGTGTTCCGT
GGGATCACCGTGCTGGTGCTGCGGATGGGGAAGAAGCATAGGTTCTCAAAGCCTGAACGG
CGCGCGCTGATGATCATCGTGGATGACGCCGGGTCATTCATTCCGGCGATGAACCACTCC
CCCTGGGATGGCGTAACAGTGGCCGACTTCGTCATGCCTTTCTTCCTCTTCATCGTCGGA
GTCGCCCTGGCGCTCGCGTACAAGAGAGTCCCGGACAAGTTGGACGCCACGAAAAAGGCA
GTGCTCCGTGCACTGAAGCTGTTTTGTCTTGGTCTTGTCCTACAAGGTGGTTTTTTTCAT
GGTGTTCGCAGTCTAACTTTTGGTGTCGACCTTCAAGAAATACGTCTGATGGGTATACTT
CAGAGAATTGCAATAGCTTATCTGTTGACTGCCCTATGTGAAATTTGGCTCAAGGGAGAT
GAAGATGTAGATTATGGATACGATTTGCTCAAGCGATACCGCTACCAACTGTTCGTAGGC
GCAATCGTGGGGATCACATACATGTCTCTGTTGTACGGTACATATGTCCGTGACTGGGAG
TACCAGACATCAGGCCCTGGCTCCATAGAGAAGTCTTTCTTTGTGAAATGTGGAGTAAGA
GGTGACACCAGCCCAGGCTGCAACGCGGTTGGCATGATCGACCGTAGAATCTTGGGTATC
CAGCATCTCTACGGGCGGCCAGTTTATGCACGATCCAAGCAATGCAGCATCGACTCGCCA
CAAAATGGCCCCCTTCCTCCTGATGCTCCCTCTTGGTGCCAGGCCCCCTTCGACCCTGAA
GGGCTTCTTAGTTCCGTGATGGCCATTGTCACATGCTTGATTGGGCTCCAATACGGACAC
GTCATCGTACATTTTCAGAAACACAGGGAGAGGATAATGAACTGGCTAATCCCTTCCTTC
AGCATGCTGGTCCTAGCCTTCGCCATGGACTTCCTTGGACTGCGCATGAACAAGCCATTA
TACACCCTAAGCTACACCTTAGCCACCGCTGGCGCCGCAGGGCTCCTCTTCTGCGGAATC
TACACGCTGGTCGACATCTACGGGTATCGGCGGCCGACCGTCGCCATGGAATGGATGGGG
ATGCACGCGCTGATGATATACGTCCTGATCGCTTGCAACATCTTGCCCATATTCATCCAC
GGCTTCTATTGGAAGGAGCCCCAAAACAACCTTCTGAAGTTCATCGGAATTGGACCATGA

Peptide Sequence

PEP ID

Zm00001d003848_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:62255756:62263760:1 gene:Zm00001d003848 transcript:Zm00001d003848_T004 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGAAAANAGASPESSGSGRPGAGAMGRYELVRSDDTPAIAVDLEAGTAAPRDDYPKRRGS
APSPAPAPTRQRLVSLDVFRGITVLVLRMGKKHRFSKPERRALMIIVDDAGSFIPAMNHS
PWDGVTVADFVMPFFLFIVGVALALAYKRVPDKLDATKKAVLRALKLFCLGLVLQGGFFH
GVRSLTFGVDLQEIRLMGILQRIAIAYLLTALCEIWLKGDEDVDYGYDLLKRYRYQLFVG
AIVGITYMSLLYGTYVRDWEYQTSGPGSIEKSFFVKCGVRGDTSPGCNAVGMIDRRILGI
QHLYGRPVYARSKQCSIDSPQNGPLPPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGH
VIVHFQKHRERIMNWLIPSFSMLVLAFAMDFLGLRMNKPLYTLSYTLATAGAAGLLFCGI
YTLVDIYGYRRPTVAMEWMGMHALMIYVLIACNILPIFIHGFYWKEPQNNLLKFIGIGP

Transcript Sequence

Transcript ID

Zm00001d003848_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:62255756:62263760:1 gene:Zm00001d003848 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCGTGCGTCGTACGTGCCTGGAGCTCATGGGCGCTGCTGCGGCCAATGCAGGGGCGTCGC
CGGAGTCGAGCGGCAGCGGGCGGCCTGGAGCGGGGGCGATGGGGCGCTACGAGCTCGTCC
GCAGCGACGACACGCCTGCCATCGCCGTGGATCTGGAGGCTGGCACCGCCGCGCCACGCG
ACGACTACCCCAAACGCCGCGGGTCCGCGCCGTCTCCGGCGCCGGCGCCGACTCGGCAGC
GCCTCGTCTCGCTCGACGTGTTCCGTGGGATCACCGTGCTGGTGCTGCGGATGGGGAAGA
AGCATAGGTTCTCAAAGCCTGAACGGCGCGCGCTGATGATCATCGTGGATGACGCCGGGT
CATTCATTCCGGCGATGAACCACTCCCCCTGGGATGGCGTAACAGTGGCCGACTTCGTCA
TGCCTTTCTTCCTCTTCATCGTCGGAGTCGCCCTGGCGCTCGCGTACAAGAGAGTCCCGG
ACAAGTTGGACGCCACGAAAAAGGCAGTGCTCCGTGCACTGAAGCTGTTTTGTCTTGGTC
TTGTCCTACAAGGTGGTTTTTTTCATGGTGTTCGCAGTCTAACTTTTGGTGTCGACCTTC
AAGAAATACGTCTGATGGGTATACTTCAGAGAATTGCAATAGCTTATCTGTTGACTGCCC
TATGTGAAATTTGGCTCAAGGGAGATGAAGATGTAGATTATGGATACGATTTGCTCAAGC
GATACCGCTACCAACTGTTCGTAGGCGCAATCGTGGGGATCACATACATGTCTCTGTTGT
ACGGTACATATGTCCGTGACTGGGAGTACCAGACATCAGGCCCTGGCTCCATAGAGAAGT
CTTTCTTTGTGAAATGTGGAGTAAGAGGTGACACCAGCCCAGGCTGCAACGCGGTTGGCA
TGATCGACCGTAGAATCTTGGGTATCCAGCATCTCTACGGGCGGCCAGTTTATGCACGAT
CCAAGCAATGCAGCATCGACTCGCCACAAAATGGCCCCCTTCCTCCTGATGCTCCCTCTT
GGTGCCAGGCCCCCTTCGACCCTGAAGGGCTTCTTAGTTCCGTGATGGCCATTGTCACAT
GCTTGATTGGGCTCCAATACGGACACGTCATCGTACATTTTCAGAAACACAGGGAGAGGA
TAATGAACTGGCTAATCCCTTCCTTCAGCATGCTGGTCCTAGCCTTCGCCATGGACTTCC
TTGGACTGCGCATGAACAAGCCATTATACACCCTAAGCTACACCTTAGCCACCGCTGGCG
CCGCAGGGCTCCTCTTCTGCGGAATCTACACGCTGGTCGACATCTACGGGTATCGGCGGC
CGACCGTCGCCATGGAATGGATGGGGATGCACGCGCTGATGATATACGTCCTGATCGCTT
GCAACATCTTGCCCATATTCATCCACGGCTTCTATTGGAAGGAGCCCCAAAACAACCTTC
TGAAGTTCATCGGAATTGGACCATGAGGTGATGAACTGATGACGGACGGTACATCGAATG
CGGATATTAGGAGTCTACTCCGACAGAGATAGAGAAACACGTGCATTCAGGCCAAGTTTT
GCTATACGGCCAATGCATCATTGCTGCGCACAGAGTGCGTCTCTTGTATATGATAAAAAG
CCTGCTGTATATAATGACGATACCGTTTGGAAGGAAAAATATAGTAGTATAGAGATCTTA
CGTGAA