Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d003847_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:2:61984604:61991864:-1 gene:Zm00001d003847 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein ClpD chloroplastic
Sequence	ATGGAGGCGTGCTGCTGCTCGTCCTCATCGGCGCCGTCGGCGTCCATCCTCGCCGCCGCG CCGGACGTAGCCCTCCGCCGTCGTATCCCCGCGGCGGCGGGAGGGAGGACGCCGGCGCGC CCGCTGCGCGTCTCCGCGGTGATGCTGGCCACCGCGGTCCCGCGGCGGCGCGGACCGGGC GTCATCAGGGCGGTGTTCGAGCGGTTCACGGAGCGGGCGGTGAAGGCGGTGGTGTTCTCG CAGCGGGAGGCGCGCGGGATGGGGGACGACACTGTTGCGCCGCACCACCTGCTGCTGGGC CTCATTGCCGAGGACCGGACCCTCGTGGGGTTCCTCGGTTCCGGCCTCCGCGTCGAGCGC GCGCGAGAGGCGTGCCGCGACGCCCTGGGTAAGGCCGGGCCTGCGCAAGCGGCCACCGGG CTGGCCACGGACGTGCCATTCTCGGCTGCAAGCAAGCGGGTCTTCGAGGCCGCCGTCGAG TTCTCCAGGAACATTGGCTGCAACTTCATCTCGCCGGAGCACATTGCTCTCGGCCTCTTC GACCTGGACGATCCCACCACCAACAGAATCCTCAAGAGCTTAGGAGCAGATCCAAGTCAG CTAGCAAAACAGGCACTTAAACGTGTCCAAGGAGAGCTTGCCAAAGATGGCAGAGAGCCA GTGGGGTTATCTTCTTTCAAAGTACGTGAGAGGTCTGCCGCGGGAGCTGGCAAGTCTGCA ATTGTCAAGTATTCAAATAAAAAGAAAGAGAAGAGTGCACTAGCTCAGTTTTGTGTGGAT TTGACTATGCGAGCAAGTGGAGGATTAATTGATCCTGTTATTGGTCGCAAGGAGGAGATC GAAAGAGTAGTTCAGATTATATGCCGGCGAACAAAGAACAATCCTATTCTGTTGGGTGAA GCAGGTGTTGGTAAAACAGCTATTGCTGAGGGCTTAGCTCTCAAAATTGCTAATGGTGAT GTTCCTATCTTCCTTGTGGGAAAACGTATATTATCATTGGATGTTGCTCTACTTATGGCT GGTGCAAAAGAAAGGGGTGAACTGGAAGCCAGGATTACTAGTTTACTTCGTGAAGTACGC AAAGCAGGTGATGTTATGCTATTCATCGATGAGGTCCATACTCTTATTGGATCTGGAATT GCTGGGAGAGGGAGTAAAGGAGCTGGCCTTGATATTGCCAATTTGCTGAAGCCTGCACTC TCTAGAGGTGAATTGCAGTGCATTGCGTCGACAACTCTAGATGAACACCGTTTGCATTTT GAGAAGGATAAGGCTTTGGCTCGCAGATTCCAGCCAGTATTGGTGAATGAGCCTAGCCAG GAGGACGCTGTCAAGATATTACTTGGTCTGCGTGAGAAATATGAGACTTACCATAAATGC AAATACACTTTAGAAGGGATCAATGCAGCAGTTTACTTGTCAGCAAGATACATCCCTGAC AGGCATCTTCCTGATAAGGCGATTGATCTGATTGATGAAGCTGGCAGTAGAGCTCGGATG GAATCATTTAAAAGGAAGAAGGAAGAACAATGCTCCATTCTCTCCAAGTCACCAGACGAA TATTGGCAAGAGATTAGAGCTGTTCAGAGTACACATGAAGTGGCACTGGCTAACAGGTTG AAGTATTCTCTTGATGAGAATGACAAAGATGATGGTGTTAATATTGAAGTCATAGGGGAC AACAAGATTGCTTCGCCATCGATGCCTCCAACTTCAGTCGATGAACCTATTCTGGTTGGT TCAGAGGAAATTGCAAGAGTTACATCATTGTGGTCAGGGATACCAGTCCAGAAGTTGACT GCAGATGAAACAAAACTTCTAGTTGGACTAGATGATGAACTTAGAAAGCGTGTCATAGGT CAAGACGATGCTGTTGTGGCCATATCTAGAGCTGTGAAGCGATCTCGTGTTGGCCTGAAT GATCCTGACAGACCTATTGCAACACTACTATTCTGTGGTCCAACTGGAGTTGGAAAAACT GAACTCACAAAAGCACTAGCAGCGAGTTATTTTGGATCTGAATCAGCTATGATTAGGTTA GATATGAGCGAATATATGGAGAGGCATGCTGTGAGCAAGCTTATAGGCTCTCCTCCGGGG TACATGGGATTTGGTGAAGGTGGAACTTTGACTGAAGCAGTCCGGAGAACACCATTCACT GTAGTCTTGCTTGATGAAATAGAGAAAGCTCATCCAGATATTTTCAACATTCTTCTCCAA GTATTTGAAGATGGACACCTGACAGACTCACAAGGACGCAGAGTTTCCTTCAAAAATACG TTGATTGTCATGACATCAAATGTTGGTTCAACATCAATCTCAAGCGGAAGGAGGAGTATA GGTTTCTCAACACAAAGGGATACAGAGGAGACCACCTATGCTGCGATGAAATCACTTGTG ATGGAAGAGCTGAAGGCATTTTTTCGGCCTGAATTGCTCAATAGATTGGATGAAGTGGTT GTATTCCACCCTCTTGAAAAGACCCAGATGATGGCTATTCTCAACCTAATTCTACAAGAA GTCAAGAGTAGACTTCTAGCCCTTGGGATTGGCCTAGAGGTATCAGAATCAATGAAGATC CTGATTTCTCAGCAAGGGTATGACAGAAGCTATGGGGCACGGCCACTTCGAAGAGCCGTT ACTCAGCTGGTTGAGGATGTTATCAGTGAAGCAATTCTCTTTGGACAGTTCAAGCCTGGT GACACGATATTGATGGGCACTGATGCCACAGGGAAGCCTTGCTTGAGCCGACTCAATGAT CAGACCGTCCAATTGTCCGACACTGCTCCAACAATATGA

Peptide Sequence

PEP ID	Zm00001d003847_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:2:61984604:61991864:-1 gene:Zm00001d003847 transcript:Zm00001d003847_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein ClpD chloroplastic
Sequence	MEACCCSSSSAPSASILAAAPDVALRRRIPAAAGGRTPARPLRVSAVMLATAVPRRRGPG VIRAVFERFTERAVKAVVFSQREARGMGDDTVAPHHLLLGLIAEDRTLVGFLGSGLRVER AREACRDALGKAGPAQAATGLATDVPFSAASKRVFEAAVEFSRNIGCNFISPEHIALGLF DLDDPTTNRILKSLGADPSQLAKQALKRVQGELAKDGREPVGLSSFKVRERSAAGAGKSA IVKYSNKKKEKSALAQFCVDLTMRASGGLIDPVIGRKEEIERVVQIICRRTKNNPILLGE AGVGKTAIAEGLALKIANGDVPIFLVGKRILSLDVALLMAGAKERGELEARITSLLREVR KAGDVMLFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALSRGELQCIASTTLDEHRLHF EKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLEGINAAVYLSARYIPD RHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEIRAVQSTHEVALANRL KYSLDENDKDDGVNIEVIGDNKIASPSMPPTSVDEPILVGSEEIARVTSLWSGIPVQKLT ADETKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLNDPDRPIATLLFCGPTGVGKT ELTKALAASYFGSESAMIRLDMSEYMERHAVSKLIGSPPGYMGFGEGGTLTEAVRRTPFT VVLLDEIEKAHPDIFNILLQVFEDGHLTDSQGRRVSFKNTLIVMTSNVGSTSISSGRRSI GFSTQRDTEETTYAAMKSLVMEELKAFFRPELLNRLDEVVVFHPLEKTQMMAILNLILQE VKSRLLALGIGLEVSESMKILISQQGYDRSYGARPLRRAVTQLVEDVISEAILFGQFKPG DTILMGTDATGKPCLSRLNDQTVQLSDTAPTI

Transcript Sequence

Transcript ID	Zm00001d003847_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:61984604:61991864:-1 gene:Zm00001d003847 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein ClpD chloroplastic
Sequence	GCGCTGGCAGGCGCGCCGCGCGCTCCGGACCCGAGCCCGACCGGCGAAGAACGCCCAGCG CGGTGGCGTGCGGTCGGAGCGGTGGAATCGAAGCCCTCCTCTGAAAAATCCCTTTCTTCG CCTATCGCACCGCATCGCGTTTCCGATCATCTGTCCCCGCACCGGTTCCCCCATCCTCCC CACCTTCCTTGCGTGCCGCTGCCGCTTCCACTTCCTCAGTTCCCTCTCCCACTCCACTCG ATTCTCGATCCCAAGCAGCGGCGCACGGCGCAACTAACCGATATATTTTTCTATATTCGA TTGCGTGCCGCTTTACATCCACGCCTTGAAGAAGGTAGGAGAAGCATATAATTGAAAGAA GCATACAATCATACACCGAACTGATCGAAGAGGGGAAAAGGGGACAATCGGGCGATGGAG GCGTGCTGCTGCTCGTCCTCATCGGCGCCGTCGGCGTCCATCCTCGCCGCCGCGCCGGAC GTAGCCCTCCGCCGTCGTATCCCCGCGGCGGCGGGAGGGAGGACGCCGGCGCGCCCGCTG CGCGTCTCCGCGGTGATGCTGGCCACCGCGGTCCCGCGGCGGCGCGGACCGGGCGTCATC AGGGCGGTGTTCGAGCGGTTCACGGAGCGGGCGGTGAAGGCGGTGGTGTTCTCGCAGCGG GAGGCGCGCGGGATGGGGGACGACACTGTTGCGCCGCACCACCTGCTGCTGGGCCTCATT GCCGAGGACCGGACCCTCGTGGGGTTCCTCGGTTCCGGCCTCCGCGTCGAGCGCGCGCGA GAGGCGTGCCGCGACGCCCTGGGTAAGGCCGGGCCTGCGCAAGCGGCCACCGGGCTGGCC ACGGACGTGCCATTCTCGGCTGCAAGCAAGCGGGTCTTCGAGGCCGCCGTCGAGTTCTCC AGGAACATTGGCTGCAACTTCATCTCGCCGGAGCACATTGCTCTCGGCCTCTTCGACCTG GACGATCCCACCACCAACAGAATCCTCAAGAGCTTAGGAGCAGATCCAAGTCAGCTAGCA AAACAGGCACTTAAACGTGTCCAAGGAGAGCTTGCCAAAGATGGCAGAGAGCCAGTGGGG TTATCTTCTTTCAAAGTACGTGAGAGGTCTGCCGCGGGAGCTGGCAAGTCTGCAATTGTC AAGTATTCAAATAAAAAGAAAGAGAAGAGTGCACTAGCTCAGTTTTGTGTGGATTTGACT ATGCGAGCAAGTGGAGGATTAATTGATCCTGTTATTGGTCGCAAGGAGGAGATCGAAAGA GTAGTTCAGATTATATGCCGGCGAACAAAGAACAATCCTATTCTGTTGGGTGAAGCAGGT GTTGGTAAAACAGCTATTGCTGAGGGCTTAGCTCTCAAAATTGCTAATGGTGATGTTCCT ATCTTCCTTGTGGGAAAACGTATATTATCATTGGATGTTGCTCTACTTATGGCTGGTGCA AAAGAAAGGGGTGAACTGGAAGCCAGGATTACTAGTTTACTTCGTGAAGTACGCAAAGCA GGTGATGTTATGCTATTCATCGATGAGGTCCATACTCTTATTGGATCTGGAATTGCTGGG AGAGGGAGTAAAGGAGCTGGCCTTGATATTGCCAATTTGCTGAAGCCTGCACTCTCTAGA GGTGAATTGCAGTGCATTGCGTCGACAACTCTAGATGAACACCGTTTGCATTTTGAGAAG GATAAGGCTTTGGCTCGCAGATTCCAGCCAGTATTGGTGAATGAGCCTAGCCAGGAGGAC GCTGTCAAGATATTACTTGGTCTGCGTGAGAAATATGAGACTTACCATAAATGCAAATAC ACTTTAGAAGGGATCAATGCAGCAGTTTACTTGTCAGCAAGATACATCCCTGACAGGCAT CTTCCTGATAAGGCGATTGATCTGATTGATGAAGCTGGCAGTAGAGCTCGGATGGAATCA TTTAAAAGGAAGAAGGAAGAACAATGCTCCATTCTCTCCAAGTCACCAGACGAATATTGG CAAGAGATTAGAGCTGTTCAGAGTACACATGAAGTGGCACTGGCTAACAGGTTGAAGTAT TCTCTTGATGAGAATGACAAAGATGATGGTGTTAATATTGAAGTCATAGGGGACAACAAG ATTGCTTCGCCATCGATGCCTCCAACTTCAGTCGATGAACCTATTCTGGTTGGTTCAGAG GAAATTGCAAGAGTTACATCATTGTGGTCAGGGATACCAGTCCAGAAGTTGACTGCAGAT GAAACAAAACTTCTAGTTGGACTAGATGATGAACTTAGAAAGCGTGTCATAGGTCAAGAC GATGCTGTTGTGGCCATATCTAGAGCTGTGAAGCGATCTCGTGTTGGCCTGAATGATCCT GACAGACCTATTGCAACACTACTATTCTGTGGTCCAACTGGAGTTGGAAAAACTGAACTC ACAAAAGCACTAGCAGCGAGTTATTTTGGATCTGAATCAGCTATGATTAGGTTAGATATG AGCGAATATATGGAGAGGCATGCTGTGAGCAAGCTTATAGGCTCTCCTCCGGGGTACATG GGATTTGGTGAAGGTGGAACTTTGACTGAAGCAGTCCGGAGAACACCATTCACTGTAGTC TTGCTTGATGAAATAGAGAAAGCTCATCCAGATATTTTCAACATTCTTCTCCAAGTATTT GAAGATGGACACCTGACAGACTCACAAGGACGCAGAGTTTCCTTCAAAAATACGTTGATT GTCATGACATCAAATGTTGGTTCAACATCAATCTCAAGCGGAAGGAGGAGTATAGGTTTC TCAACACAAAGGGATACAGAGGAGACCACCTATGCTGCGATGAAATCACTTGTGATGGAA GAGCTGAAGGCATTTTTTCGGCCTGAATTGCTCAATAGATTGGATGAAGTGGTTGTATTC CACCCTCTTGAAAAGACCCAGATGATGGCTATTCTCAACCTAATTCTACAAGAAGTCAAG AGTAGACTTCTAGCCCTTGGGATTGGCCTAGAGGTATCAGAATCAATGAAGATCCTGATT TCTCAGCAAGGGTATGACAGAAGCTATGGGGCACGGCCACTTCGAAGAGCCGTTACTCAG CTGGTTGAGGATGTTATCAGTGAAGCAATTCTCTTTGGACAGTTCAAGCCTGGTGACACG ATATTGATGGGCACTGATGCCACAGGGAAGCCTTGCTTGAGCCGACTCAATGATCAGACC GTCCAATTGTCCGACACTGCTCCAACAATATGAACATCCCAGCACCCTGTGTATATAGTT GCAGATTACACATTTATTCTGTACATAGAATCCCCATCTCAGCGTGGACATAATCTTCCA GATGTTGGTTTGTCTCCACAACATTATAATGTAAATCTTATCCTTAAATCCAATTGTACA TATTTTTATTATTAATGTTAGACCGTGTTGCGTGTATAGGCCTGAGGTCTAGTTCATGTG TAGTGTATATATTGTACTCTTTTTAATATTTAGCTATTCTCATTTATCATGGTATGAGAC TAGCTCCAAT