Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003817_T025
CDS Infomation

cds chromosome:B73_RefGen_v4:2:60755616:60763024:1 gene:Zm00001d003817 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:starch branching enzyme3 description:Starch branching enzyme IIa

Sequence

ATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATCAAGTTTTCTGTGCAG
GCTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGGAGAAATAT
GTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATCACATGTT
GGAATGAGTAGCCCGGAACCAAAGATAAATACATATGCTAACTTCAGAGATGAGGTGCTT
CCAAGAATTAAAAAGCTTGGATACAATGCAGTACAGATAATGGCAATCCAGGAACACTCT
TATTATGCAAGCTTTGGGTACCATGTTACGAATTTTTTTGCCCCAAGTAGCCGTTTTGGG
ACTCCAGAGGACCTAAAATCTCTTATTGATAAAGCGCATGAGCTTGGCTTGCTAGTGCTT
ATGGATATTGTTCATAGTCATTCATCAAATAATACCTTGGATGGTTTGAATGGTTTCGAT
GGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCT
CGCCTATTCAATTATGGGAGTTGGGAAGTTTTGAGATTTCTATTGTCAAATGCGAGATGG
TGGCTTGAAGAATATAAATTTGATGGGTTTCGATTTGATGGGGTGACCTCCATGATGTAT
ACTCACCATGGATTACAAGTGACATTCACTGGGAACTATGGCGAGTATTTTGGATTTGCC
ACTGATGTTGATGCAGTAGTTTACCTAATGCTGGTAAACGATCTTATTCGTGGGCTTTAT
CCAGAAGCTGTATCCATTGGCGAAGATGTCAGCGGAATGCCTACATTTTGTATCCCTGTC
CAAGATGGTGGTGTTGGTTTTGATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATT
GAACTTCTGAAGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACA
AATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAAGCTCTTGTT
GGTGACAAGACAATTGCATTCTGGTTGATGGATAAGGATATGTATGATTTCATGGCTCTG
GACAGGCCTTCAACGCCTCGCATCGATCGTGGGATAGCATTACATAAAATGATTAGGCTT
GTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCAT
CCTGAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCATTCCT
GGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTGGAGATGCAGATTAT
CTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAATGCAGCACCTTGAGGGAAAATAT
GAATTCATGACATCTGATCACTCATATGTATCACGGAAGCATGAGGAGGATAAGGTGATC
ATCTTTGAGAGAGGAGATTTGGTCTTCGTGTTCAACTTCCACTGGAGCAATAGCTATTTT
GACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGATCGTTTTAGATTCTGACGAT
GGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTGACTGG
CCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCAGAACAGCCGTCGTA
TATGCACCTGCAGGTGCAGAGGACGAATAG

Peptide Sequence

PEP ID

Zm00001d003817_P025
PEP Infomation

pep chromosome:B73_RefGen_v4:2:60755616:60763024:1 gene:Zm00001d003817 transcript:Zm00001d003817_T025 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:starch branching enzyme3 description:Starch branching enzyme IIa

Sequence

MDTPSGVKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHV
GMSSPEPKINTYANFRDEVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFG
TPEDLKSLIDKAHELGLLVLMDIVHSHSSNNTLDGLNGFDGTDTHYFHGGPRGHHWMWDS
RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNYGEYFGFA
TDVDAVVYLMLVNDLIRGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWI
ELLKQSDEYWEMGDIVHTLTNRRWLEKCVTYCESHDQALVGDKTIAFWLMDKDMYDFMAL
DRPSTPRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDFPRGPQSLPNGSVIP
GNNNSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEGKYEFMTSDHSYVSRKHEEDKVI
IFERGDLVFVFNFHWSNSYFDYRVGCFKPGKYKIVLDSDDGLFGGFSRLDHDAEYFTADW
PHDNRPCSFSVYAPSRTAVVYAPAGAEDE

Transcript Sequence

Transcript ID

Zm00001d003817_T025
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:60755616:60763024:1 gene:Zm00001d003817 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:starch branching enzyme3 description:Starch branching enzyme IIa

Sequence

GATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATCAAGTTTTC
TGTGCAGGCTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGGA
GAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATC
ACATGTTGGAATGAGTAGCCCGGAACCAAAGATAAATACATATGCTAACTTCAGAGATGA
GGTGCTTCCAAGAATTAAAAAGCTTGGATACAATGCAGTACAGATAATGGCAATCCAGGA
ACACTCTTATTATGCAAGCTTTGGGTACCATGTTACGAATTTTTTTGCCCCAAGTAGCCG
TTTTGGGACTCCAGAGGACCTAAAATCTCTTATTGATAAAGCGCATGAGCTTGGCTTGCT
AGTGCTTATGGATATTGTTCATAGTCATTCATCAAATAATACCTTGGATGGTTTGAATGG
TTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTG
GGATTCTCGCCTATTCAATTATGGGAGTTGGGAAGTTTTGAGATTTCTATTGTCAAATGC
GAGATGGTGGCTTGAAGAATATAAATTTGATGGGTTTCGATTTGATGGGGTGACCTCCAT
GATGTATACTCACCATGGATTACAAGTGACATTCACTGGGAACTATGGCGAGTATTTTGG
ATTTGCCACTGATGTTGATGCAGTAGTTTACCTAATGCTGGTAAACGATCTTATTCGTGG
GCTTTATCCAGAAGCTGTATCCATTGGCGAAGATGTCAGCGGAATGCCTACATTTTGTAT
CCCTGTCCAAGATGGTGGTGTTGGTTTTGATTATCGTCTTCATATGGCTGTCCCAGACAA
ATGGATTGAACTTCTGAAGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACAC
CTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAAGC
TCTTGTTGGTGACAAGACAATTGCATTCTGGTTGATGGATAAGGATATGTATGATTTCAT
GGCTCTGGACAGGCCTTCAACGCCTCGCATCGATCGTGGGATAGCATTACATAAAATGAT
TAGGCTTGTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTT
TGGGCATCCTGAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGT
CATTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTGGAGATGC
AGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAATGCAGCACCTTGAGGG
AAAATATGAATTCATGACATCTGATCACTCATATGTATCACGGAAGCATGAGGAGGATAA
GGTGATCATCTTTGAGAGAGGAGATTTGGTCTTCGTGTTCAACTTCCACTGGAGCAATAG
CTATTTTGACTATCGCGTTGGTTGTTTCAAGCCTGGGAAGTACAAGATCGTTTTAGATTC
TGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGC
TGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCAGAACAGC
CGTCGTATATGCACCTGCAGGTGCAGAGGACGAATAGGGCACAACAGCGGTTGTTGGGGA
AGAACTTCAGAGGGATGTGCTGCTGGTGGACTGACACCACTGCCACGCGCGATGCTGCCA
GATGTTGCCCTCGAGACCACGTGGCAGGACGATCAGCTATTCAGGTGGATAGGTTAGCTT
ACCGATGAGCTCTCGCTTTCGAGTGACTGGTGAAGGAAATGGACCTCGCACACCGCATTT
TCGCTATGCATTCTGAAAATGTACCGTGTGGTTTTGTACATATGGCATCAGTAGGCATTA
TATCATTCATCTCGCTGAACCAACCATTTACGCTATACTCCGTACTGCTGT