Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003713_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:2:56087205:56097324:1 gene:Zm00001d003713 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exocyst complex component SEC5A
Sequence

ATGGAAGTTTTGCAAAATAAAATTCGTGAAAAAGTGCTCTCTGATTCAAAGTGGAGGCAG
CTGCAACAAGATTCAAATAAATCTCTGGAAGTTGATTCTGCCATTTGTGATTCTCCTCGA
GCTGATCAGTTGTCAACAAACTTTATGGCTGAGGAAGCTGATAGTTTAAGGGCCACCTAC
ACTCGTAGGCTAACTTCTGTGCTTATACAGCATGTTCCAGCTTTCTGGAGATTAGCTTTA
TCTGTTTTCAGTGGAAAGTTTGCCAAGACAGCTTCTGGTAATGTAGTTTCTGATTCTGAC
ATGAATGCAAAGCCGTCTGCAAATAAGAACGATGACAAAGGTGGAGATGTGAAGTACACA
AACCACACTCTCGATGAAGTTGCTAGTATGGTTCGGGATACTATATCGGCTTTTGACACT
AAGGTTCAGAGTACCTTCCGTGATTTCGAGGAATGCAACATTCTTTGTCCATACATGAGT
GACACTATAAAAGAAATAGCTAAGGCCTGTCAGACTCTTGAAGGGAAGGATTCATCTCCA
ACTGCTGTAAAATTGTTGCGCACCCTTCATTTTCAAATGACGAAGCTTTACGTTCTACGG
CTTTGTTCATGGATGCGGGCAACAACTAAGGAGATATCAAAAGATGATACTTGGGTTATT
TTATCCACCCTTGAGAGAAACAAGTCTCCATATGCAATTTCATGCATGCCCCTGGAATTC
CGTGACATAATAATTTCAGCAATGGACCGGATTGATACTATGATTCTTAATCTGATGAGC
GAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATTAATGAGTCTGTCAGA
CTTGCATTTTTGAATTCCTTTCTGGATTTTGCTGGTTATCTGGAGAGGTTTGGAGGTGAA
CTAACTGAGAACAGGCCAAACAATGAAAACAATTATGTTCAAAATGGATACATAAATGGT
ACTAGAGAAACATCTGCTAACACAGATGGAGATTTGCACAAAAAGCTGCTGGTTGTTTTG
AGTAACATTGGATATTGTAAAGCTGAACTTTCAGAAGAACTGTACACCACATATAGACAC
ATTTGGTCTCCAGTCAGGAATAATGATGAGCGAAGTTCTGACATGCGAGATCTGATGACT
TCTTTCTCTGCGCTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGTCAAACTTG
ATCAGAAGTTCTGCACAAAGTTATCTTTTGGATCCTGGGATTTATTGGGGAGCAGCACCA
ATGGTAAAGAGCATTCGAGATGCAACTCTTGACTTGCTGCACATCCTTGTAGCAGTACAT
GCAGAGATATACTCTGGTGCTCGGCCTTTGTTGGAGAAGACAATGAAAATTTTGGTTGAG
GGTTTGGTCGACATCTTTCTTAGTGTTTTTCATGAGAATAAGACCAAAGGTATTAGGTTG
TTGGATGCAAATGGTTTTTGTCAACTCATGCTTGAGCTTGAGTATTTTGAGACTGTGCTA
CACACATACTTCTCACCCGAGGCACAGCAGGCTATGAAATCCTTACAAGAGAATTTGTTG
GAAAAGGCCTGTGAAAGTATTGCAGAAGCCATGGAAAATCCTGGACACCAACGGCGACCA
ACCCGTGGCAGTGAAGATGCATCGTCAGATGATAGACAGCCATCAGTATCACCTGATGAT
TTGCTTTTGCTTGCTCAACAGTACAGTAGTGATCTGCTGCAAGGGGAGCTGGAGAGGACT
CGATTGAACATAGCCTGCTTCATGGAGTCAGCCCTTCAATCAACGTCTGCGCCAGCAGGC
TCAAAGCCTGCTGCATATTCTTCTTACCATGCGCAAGTACCACAGCACGCCCCCATTCAA
ACGTCCTCGCCTAGTTTTAGAAGGCAGCAGACTGGTACAAGCTCTCCTGTAGTCTCCAGA
CGGCGACGGTGA

Peptide Sequence

PEP ID

Zm00001d003713_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:2:56087205:56097324:1 gene:Zm00001d003713 transcript:Zm00001d003713_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exocyst complex component SEC5A
Sequence

MEVLQNKIREKVLSDSKWRQLQQDSNKSLEVDSAICDSPRADQLSTNFMAEEADSLRATY
TRRLTSVLIQHVPAFWRLALSVFSGKFAKTASGNVVSDSDMNAKPSANKNDDKGGDVKYT
NHTLDEVASMVRDTISAFDTKVQSTFRDFEECNILCPYMSDTIKEIAKACQTLEGKDSSP
TAVKLLRTLHFQMTKLYVLRLCSWMRATTKEISKDDTWVILSTLERNKSPYAISCMPLEF
RDIIISAMDRIDTMILNLMSETAKSYDISQPLQEINESVRLAFLNSFLDFAGYLERFGGE
LTENRPNNENNYVQNGYINGTRETSANTDGDLHKKLLVVLSNIGYCKAELSEELYTTYRH
IWSPVRNNDERSSDMRDLMTSFSALEEKVLDQYTFAKSNLIRSSAQSYLLDPGIYWGAAP
MVKSIRDATLDLLHILVAVHAEIYSGARPLLEKTMKILVEGLVDIFLSVFHENKTKGIRL
LDANGFCQLMLELEYFETVLHTYFSPEAQQAMKSLQENLLEKACESIAEAMENPGHQRRP
TRGSEDASSDDRQPSVSPDDLLLLAQQYSSDLLQGELERTRLNIACFMESALQSTSAPAG
SKPAAYSSYHAQVPQHAPIQTSSPSFRRQQTGTSSPVVSRRRR

Transcript Sequence

Transcript ID

Zm00001d003713_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:56087205:56097324:1 gene:Zm00001d003713 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exocyst complex component SEC5A
Sequence

ATATTTCCTATCAGAATAGCAGGATTCATGGATTGTTTGAAAAGTGTACTCAAGATCATG
AATTGCGAATGGAAGTTTTGCAAAATAAAATTCGTGAAAAAGTGCTCTCTGATTCAAAGT
GGAGGCAGCTGCAACAAGATTCAAATAAATCTCTGGAAGTTGATTCTGCCATTTGTGATT
CTCCTCGAGCTGATCAGTTGTCAACAAACTTTATGGCTGAGGAAGCTGATAGTTTAAGGG
CCACCTACACTCGTAGGCTAACTTCTGTGCTTATACAGCATGTTCCAGCTTTCTGGAGAT
TAGCTTTATCTGTTTTCAGTGGAAAGTTTGCCAAGACAGCTTCTGGTAATGTAGTTTCTG
ATTCTGACATGAATGCAAAGCCGTCTGCAAATAAGAACGATGACAAAGGTGGAGATGTGA
AGTACACAAACCACACTCTCGATGAAGTTGCTAGTATGGTTCGGGATACTATATCGGCTT
TTGACACTAAGGTTCAGAGTACCTTCCGTGATTTCGAGGAATGCAACATTCTTTGTCCAT
ACATGAGTGACACTATAAAAGAAATAGCTAAGGCCTGTCAGACTCTTGAAGGGAAGGATT
CATCTCCAACTGCTGTAAAATTGTTGCGCACCCTTCATTTTCAAATGACGAAGCTTTACG
TTCTACGGCTTTGTTCATGGATGCGGGCAACAACTAAGGAGATATCAAAAGATGATACTT
GGGTTATTTTATCCACCCTTGAGAGAAACAAGTCTCCATATGCAATTTCATGCATGCCCC
TGGAATTCCGTGACATAATAATTTCAGCAATGGACCGGATTGATACTATGATTCTTAATC
TGATGAGCGAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATTAATGAGT
CTGTCAGACTTGCATTTTTGAATTCCTTTCTGGATTTTGCTGGTTATCTGGAGAGGTTTG
GAGGTGAACTAACTGAGAACAGGCCAAACAATGAAAACAATTATGTTCAAAATGGATACA
TAAATGGTACTAGAGAAACATCTGCTAACACAGATGGAGATTTGCACAAAAAGCTGCTGG
TTGTTTTGAGTAACATTGGATATTGTAAAGCTGAACTTTCAGAAGAACTGTACACCACAT
ATAGACACATTTGGTCTCCAGTCAGGAATAATGATGAGCGAAGTTCTGACATGCGAGATC
TGATGACTTCTTTCTCTGCGCTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGT
CAAACTTGATCAGAAGTTCTGCACAAAGTTATCTTTTGGATCCTGGGATTTATTGGGGAG
CAGCACCAATGGTAAAGAGCATTCGAGATGCAACTCTTGACTTGCTGCACATCCTTGTAG
CAGTACATGCAGAGATATACTCTGGTGCTCGGCCTTTGTTGGAGAAGACAATGAAAATTT
TGGTTGAGGGTTTGGTCGACATCTTTCTTAGTGTTTTTCATGAGAATAAGACCAAAGGTA
TTAGGTTGTTGGATGCAAATGGTTTTTGTCAACTCATGCTTGAGCTTGAGTATTTTGAGA
CTGTGCTACACACATACTTCTCACCCGAGGCACAGCAGGCTATGAAATCCTTACAAGAGA
ATTTGTTGGAAAAGGCCTGTGAAAGTATTGCAGAAGCCATGGAAAATCCTGGACACCAAC
GGCGACCAACCCGTGGCAGTGAAGATGCATCGTCAGATGATAGACAGCCATCAGTATCAC
CTGATGATTTGCTTTTGCTTGCTCAACAGTACAGTAGTGATCTGCTGCAAGGGGAGCTGG
AGAGGACTCGATTGAACATAGCCTGCTTCATGGAGTCAGCCCTTCAATCAACGTCTGCGC
CAGCAGGCTCAAAGCCTGCTGCATATTCTTCTTACCATGCGCAAGTACCACAGCACGCCC
CCATTCAAACGTCCTCGCCTAGTTTTAGAAGGCAGCAGACTGGTACAAGCTCTCCTGTAG
TCTCCAGACGGCGACGGTGAGCGTAGTGCATCTTCCCTGGAATTTCCTACCACCCCTCAT
GTTTTTTTTTATTTCTTGTAATTATCATCCTGTTGTCATGTGTTATGAATTTTGATCCAT
TCTTTTGGTGTCGTAAGATAAAAATGGTGGTCAAGTGCTTCTGCACGGGAACATAAAATT
GTATAATATGCCCACGAATCAAATACT