Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003602_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:2:49523249:49528745:1 gene:Zm00001d003602 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transmembrane CLPTM1 family protein
Sequence

ATGATTGACATTGCCCCGTTCACATTTTACAGGTATCCCAACAATAATGTACCTCCCATT
GTTGCTCCATATCTGAATGTGGATCCAGTTACGGGCGATTATTATCCTACAGTATTCTTC
AATGAGTTTTGGCTATTGAAGGATAAATTAATAGCGCTCAACGAGACTGTGGAGGAATTG
CCCTTAAACCTTGAAGTTGGTCCTATTAGCATGACCAAGTGGCAATTATTTTTACAGATT
GAGCAGTCCTTCCAGGTTCATCGTAGTTATGGAAGTATGCTTGAAGGCGAGGCTGATGAA
CTCAAGAGGGTTTTTCTTGAAGGAAATCCTTATCTTCTTGGATTGACTATGGTCGTTTCT
CTATTACACTCCCTGTTTGATTTTCTGGCCTTCAAAAATGATATCCAGTTCTGGAACAAG
AACAAGTCCATGGAAGGTCTATCGGCAAAATCTGTGGTTCTGAATTTTGTGTGTCAACTA
GTTGTTTTCCTGTACCTTCTTGACAATGACACTTCATGGATGATCCTTGCTAGCTCTGGA
GTTGGTGTGTGCATTGAATTTTGGAAGATTGGAAAGGCAATGCATATTGAGGTTGATAGA
AGTGGAAAAATTCCCATGTTGAGGTTCCGAGACCGTGAATCATATGCACAGAATAAGACT
AAAGAGTACGATGCCATTGCAATGAAGTACCTTACCTATGTACTTTTCCTCCTTGTGGTC
GGTTTCTCTATCTATTCACTTAAGTATGAAAAGCACAAGAGCTGGTACTCATGGATACTT
TCTTCTATGACAAGCTGTGTGTACATGTTTGGTTTCATTATGATGTGCCCCCAATTGTTT
ATCAACTACAAGCTGAAGTCTGTTGCTCATATGCCATGGAGACAAATGACCTACAAGTTC
CTCAACACTATAATCGATGACCTTTTTGCATTTGTCATCAAAATGCCAATGCTTCATCGT
CTCTCAGTTTTCAGAGATGATGTTATCTTCTTGATATACCTCTATCAGAGGTGGAAGTAT
CCGGTCGACAAGAAGCGTGTTAACGAGTTTGGCTTCGGGGGCGAGGACGAACCGGCAGCC
CAGGAGGCTGTGGAAGGAAGTGATTCAGCTGCAGCACCCCAGACGAGTACGGAGGACAAG
AAAACCAAGTGA

Peptide Sequence

PEP ID

Zm00001d003602_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:2:49523249:49528745:1 gene:Zm00001d003602 transcript:Zm00001d003602_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transmembrane CLPTM1 family protein
Sequence

MIDIAPFTFYRYPNNNVPPIVAPYLNVDPVTGDYYPTVFFNEFWLLKDKLIALNETVEEL
PLNLEVGPISMTKWQLFLQIEQSFQVHRSYGSMLEGEADELKRVFLEGNPYLLGLTMVVS
LLHSLFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFVCQLVVFLYLLDNDTSWMILASSG
VGVCIEFWKIGKAMHIEVDRSGKIPMLRFRDRESYAQNKTKEYDAIAMKYLTYVLFLLVV
GFSIYSLKYEKHKSWYSWILSSMTSCVYMFGFIMMCPQLFINYKLKSVAHMPWRQMTYKF
LNTIIDDLFAFVIKMPMLHRLSVFRDDVIFLIYLYQRWKYPVDKKRVNEFGFGGEDEPAA
QEAVEGSDSAAAPQTSTEDKKTK

Transcript Sequence

Transcript ID

Zm00001d003602_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:49523249:49528745:1 gene:Zm00001d003602 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transmembrane CLPTM1 family protein
Sequence

AACCGAAAAACCTCCTCTACAGTCCCATCTAGGCGCCCCTCCTCGGCTCCGATCCAGTTT
CGCCGGCGGCCATGTCGCAGCCGGCGGCGACGGTGGCCGCGGCGGCGCAGCCGCAGGGTC
GCGGCCCCGCGGGGCGCCAGGGCGGCGGTGGCGGCCTTGGGCAGAGCATCGCAGGCATCG
TGCGGATGGCGGTGTTCTGGTACTTTGCGTCCAAGTTCTTCGGGCCCAAGCGCCCACCCG
CGGACCCCGGGATGCTCATGTCCAACCTCTTCCAGAAGGGCGAGCCAATGGATATGTGGA
TGTATTTGTCAGAGAACGAGAAGTTCAACGATTTTGCTAATGAGGATGCACTTATTTGGC
ACGAGGCAAACATACCATATGCAGTCTGGGGACCTACCAGTACTAGAACACGGTCATTAA
CGTACTATCCGTCAGAGGCTCTCAAGCATAATGGCTCTTTGTATGCTCATGTTTACTTCG
CCCGTTCGGGTTATCCTGTGGACCCTACAGATCCAGAATATGAGCAGAAATCTTCGTTTG
GGAGGACCCATCCTGTTGTGGCATTCTTGCCAAAATCAAAAGCTGGTAAAAAGAAGAGCT
TGCTTGGAGATTCAGAAGAGCCTGAAGAGAAAGCACCGCGCAATAAGGAGAATAAAGAAT
CTGAGGATAAAGATGAGGGTCCGACTGAATATATATCTTATTGGAAACCAAATGTAACAA
TAAATCTTGTTGAAGATTTCACACGGTATTCACAAAATCAAGCTCTGTTTCTAAGTTTGA
TTATGTTGCAACATTGGCACATGATCCACCCCTCTCACCCTGCCCTTTTGACAGCTTAGC
TATTAATCATTTTACCTTGCCTTGATAGTTACCACATTACCATGAAGTACTAAATTGGAC
ATATGCCCCGTTATACAATTTCCAGTTGGTGACAAAATACTTTCAGTCTCCAGTGTAGCA
TTTATTTTAAACAAGATCGATGTTATTACAATGAATAAGAATTTCTGAATCAAGAGTTTG
TATAACGTACCAACTTTTCTGAGGGCCACTTACAACCCTCGTCCAATTTGATATAGAAGC
TGTTTGCATCATATGGTAATCACAAGGCGATACTGCTAAGCCTAAATATGGTTAAATTCA
AGGTAGCACTGAGGTTATATTGACATGCAGATGAAACTACATGAGTTTTTCCCCTCTTAA
CAGCTCCAGGTTTTGCACCAGTCATTTTTAGCATATGTTTTTCTTGATCATATGACAAGA
CTTTGTTGTTATTGTTGTTGTATATAGCATCAGCTTTGCTGTTTATGCGTCCTCTTTAAT
CTGTCCATCGTCTCTGCATATGATTGACATTGCCCCGTTCACATTTTACAGGTATCCCAA
CAATAATGTACCTCCCATTGTTGCTCCATATCTGAATGTGGATCCAGTTACGGGCGATTA
TTATCCTACAGTATTCTTCAATGAGTTTTGGCTATTGAAGGATAAATTAATAGCGCTCAA
CGAGACTGTGGAGGAATTGCCCTTAAACCTTGAAGTTGGTCCTATTAGCATGACCAAGTG
GCAATTATTTTTACAGATTGAGCAGTCCTTCCAGGTTCATCGTAGTTATGGAAGTATGCT
TGAAGGCGAGGCTGATGAACTCAAGAGGGTTTTTCTTGAAGGAAATCCTTATCTTCTTGG
ATTGACTATGGTCGTTTCTCTATTACACTCCCTGTTTGATTTTCTGGCCTTCAAAAATGA
TATCCAGTTCTGGAACAAGAACAAGTCCATGGAAGGTCTATCGGCAAAATCTGTGGTTCT
GAATTTTGTGTGTCAACTAGTTGTTTTCCTGTACCTTCTTGACAATGACACTTCATGGAT
GATCCTTGCTAGCTCTGGAGTTGGTGTGTGCATTGAATTTTGGAAGATTGGAAAGGCAAT
GCATATTGAGGTTGATAGAAGTGGAAAAATTCCCATGTTGAGGTTCCGAGACCGTGAATC
ATATGCACAGAATAAGACTAAAGAGTACGATGCCATTGCAATGAAGTACCTTACCTATGT
ACTTTTCCTCCTTGTGGTCGGTTTCTCTATCTATTCACTTAAGTATGAAAAGCACAAGAG
CTGGTACTCATGGATACTTTCTTCTATGACAAGCTGTGTGTACATGTTTGGTTTCATTAT
GATGTGCCCCCAATTGTTTATCAACTACAAGCTGAAGTCTGTTGCTCATATGCCATGGAG
ACAAATGACCTACAAGTTCCTCAACACTATAATCGATGACCTTTTTGCATTTGTCATCAA
AATGCCAATGCTTCATCGTCTCTCAGTTTTCAGAGATGATGTTATCTTCTTGATATACCT
CTATCAGAGGTGGAAGTATCCGGTCGACAAGAAGCGTGTTAACGAGTTTGGCTTCGGGGG
CGAGGACGAACCGGCAGCCCAGGAGGCTGTGGAAGGAAGTGATTCAGCTGCAGCACCCCA
GACGAGTACGGAGGACAAGAAAACCAAGTGATCTCCAATCTTTTGATCATCCAAATACAA
GCATACATCTCTGCAACATCTGCCTTCCCAGCGGGCGTGAAATTTCTTTGCTGAAACTGG
ATGCTGGACTCTTGCGGTCTTGTCTTACCGAGACGTGCTGACCATAAGATAAGGCGTGTA
ACAAGGGACACGATAGTCTTTTGTCTAGAGCAGCGGGCGAACAGGCACACACTGTCACAA
TTACGTTTCCAGTTCGTCTTTTAGCAGCCATTACTAGTTGATATGCTTGTTTGATTGGTT
TGTGTACAAATTTTGTGCATTTTTCTTAAAACACACAATTGGCGGCTCGTAGTTTC