Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d003477_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:2:45426906:45430349:-1 gene:Zm00001d003477 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome2 description: cryptochrome2
Sequence	ATGAGGATCGTGGTGTGGTTCCGGAGGGACCTCAGGGTGGAGGACAACCCGGCGCTCGCG GCGGCGGCGCGTGCCGGTGGGGAGGTGGTGCCGGCGTACGTCTGGTCGCCAGAGGAGGAG GGCCCTTACTACCCCGGCCGCGTATCCCGGTGGTGGATCAGCCAGAGCCTGAACCACCTG GACGCCTCGCTCCGCCGCCTTGGGGCGGGAAAGCTTGTCACGCGGAGGTCGGCCGACGCC GCCGTCGCGCTGCTCCAGCTGGTCCGCGACACCGGCGCCACGCACGTCTACTTCAATCAT CTATACGACCCGATCTCACTGGTCAGGGACCGCCGGTTGAAGGAGATGCTGGCGGCTGAG GGCATCGTTGTGCAATCTTTCAATTCGGATCTGCTGTACGAGCCATGGGAAGTTGTCGAT GATGAAGGGCAGCCATTCACCATGTTCGACCCGTTCTGGAACAGGTGCCTCAGCATGCCG TATGACCCCCCTGCACCGCTTCTGCCCCCGAAGAGGATCAATTCAGGTGACTTATCGATG TGCCCATCGGAGGATCTGATCTTTGAGGACGAGTCAGAGAGGGGAAGCAACGCTCTTCTG GCCCGAGCGTGGACGCCAGGGTGGCAGAACGCAGACAAGGCGCTGACGGCCTTCCTCAAC GGCCCACTGGCCGACTACTCAGTGAACCGCAAGAAGGCCGATAGCGCGAGCACGTCCCTG CTGTCGCCTCACCTGCACTTCGGCGAGCTTAGCGTGCGCAAGGTCTTCCACCTAGTTCGC ATGAAGCAGCTCGTGTGGAGCAACGAGGGCAACCACGCTGCCGAGGAGAGCTGCACCCTG TTCCTCCGTTCCATCGGCCTGCGGGAGTACTCCCGGTACCTGAGCTTCAATCACCCGAGC AGCCATGAGAGGCCCCTCCTGGCGCACCTCAGGTTCTTCCCCTGGGTGGTGGACGAGAGC TACTTCAAGATTTGGAGGCAGGGAAGGACCGGGTACCCGCTCGTCGACGCTGGCATGAGG GAGCTGTGGGCGACGGGGTGGCTGCATGACCGGATACGTGTGGTGGTGGCAAGCTTCTTC GTCAAGGTCCTCCAGCTTCCATGGCGATGGGGCATGAAGTACTTTTGGGACACGTTACTG GATGCTGATCTTGAGAGCGATGCGCTGGGCTGGCAGTACATCACTGGCTCTCTTCCTGAT GGCCGGGAGCTTGACCGCATCGACAACCCCCAGTTTGAAGGCTACAAGTTCGACCCGCAT GGGGAGTACGTCCGGCGATGGATTCCTGAGCTCGCAAGGCTGCCGACGGAGTGGATACAC CATCCATGGGACGCGCCTGTCTCCGTGCTGCAAGCTGCAGGAATCGAGCTGGGCTCTAAC TACCCTCTCCCCATAGTGGAGCTGGACGCGGCCAAGGGCAGGCTGCAAGCGGCCCTGTCA GAGATGTGGCAGCTGGAGGCGGCGTCGAGGGCCACCATGAACAACGGGACGGAGGAAGGC CTCGGCGACTCCTCGGAGGTCCTGTTCCCTCAAGAGCTGCAGATGGAGGTCGACCGGCAG CCAGCCCCAGCCGAGGCAGCAGCCAACGTGCACGTGCACGTGCCGATGCCTGCCCGGAGG CGCGGGGACCAGATGGTGCCCACCATGACGACCTCTTCGCTGAACAGAGCTGGAACAGAG GTCTCCGCCGATCTAGTAGTAGCGAACAGCGAGGAGGAGGACACCAGGGCGCAGGTTCCG TTCCACGCGCATCTCCATCTCCACCCCCGAGCCGAAGCCCCGCCAGCTGCGCGTAGAACC AACAACGGCGCTCGCCAGCACGACGTCTTCCAGCAGCGTCGGAACCACAGGCGAGATGCT CTGCTTGCTCCGTCGGCGTCGGAGGCTTCGAGCAGCTGGACCGGCAGAGAGGGCGCCGTG GTCCCGGTCTGGTCGCCTCCTGCGGCGTCGGGCCATTCGGACGCCTTCGCCGCCGACGAA GCTGACGTCTCTAGTAGGAGCTATCTGGGTAGGCATCCGCAGTCGCACCGCCTGATGAAC TGGAGCCAACTATCGCAGTCATCGTGA

Peptide Sequence

PEP ID	Zm00001d003477_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:2:45426906:45430349:-1 gene:Zm00001d003477 transcript:Zm00001d003477_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome2 description: cryptochrome2
Sequence	MRIVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHL DASLRRLGAGKLVTRRSADAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAE GIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRINSGDLSM CPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSL LSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFF VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDPH GEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAALS EMWQLEAASRATMNNGTEEGLGDSSEVLFPQELQMEVDRQPAPAEAAANVHVHVPMPARR RGDQMVPTMTTSSLNRAGTEVSADLVVANSEEEDTRAQVPFHAHLHLHPRAEAPPAARRT NNGARQHDVFQQRRNHRRDALLAPSASEASSSWTGREGAVVPVWSPPAASGHSDAFAADE ADVSSRSYLGRHPQSHRLMNWSQLSQSS

Transcript Sequence

Transcript ID	Zm00001d003477_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:2:45426906:45430349:-1 gene:Zm00001d003477 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome2 description: cryptochrome2
Sequence	AAATGGACAAGGAGAAAAGTTAGATCAAACCTAGCCAAGCAATCCTGATATCCACAGCCT CTTTCTCCACTGGACGAGAACTGTCCCAGCAGAAACCAGAAGCACCAACTGCAAACATCA GAGAAGAGAAGAGTAGGGGGGAAATTACTACTCTACGACTCGTGCGCCCACTCCTCCACT GTTCTTGGGAATCTCGGGGGAGAAGAGGAAGAAAGCAGTGGGTCTCAGCGCACCACTCAT TATTCCTGGCTCCATGGCTTCCTGACGTCCCTGTGCGGCGGGGACCCGGCGATGAGGATC GTGGTGTGGTTCCGGAGGGACCTCAGGGTGGAGGACAACCCGGCGCTCGCGGCGGCGGCG CGTGCCGGTGGGGAGGTGGTGCCGGCGTACGTCTGGTCGCCAGAGGAGGAGGGCCCTTAC TACCCCGGCCGCGTATCCCGGTGGTGGATCAGCCAGAGCCTGAACCACCTGGACGCCTCG CTCCGCCGCCTTGGGGCGGGAAAGCTTGTCACGCGGAGGTCGGCCGACGCCGCCGTCGCG CTGCTCCAGCTGGTCCGCGACACCGGCGCCACGCACGTCTACTTCAATCATCTATACGAC CCGATCTCACTGGTCAGGGACCGCCGGTTGAAGGAGATGCTGGCGGCTGAGGGCATCGTT GTGCAATCTTTCAATTCGGATCTGCTGTACGAGCCATGGGAAGTTGTCGATGATGAAGGG CAGCCATTCACCATGTTCGACCCGTTCTGGAACAGGTGCCTCAGCATGCCGTATGACCCC CCTGCACCGCTTCTGCCCCCGAAGAGGATCAATTCAGGTGACTTATCGATGTGCCCATCG GAGGATCTGATCTTTGAGGACGAGTCAGAGAGGGGAAGCAACGCTCTTCTGGCCCGAGCG TGGACGCCAGGGTGGCAGAACGCAGACAAGGCGCTGACGGCCTTCCTCAACGGCCCACTG GCCGACTACTCAGTGAACCGCAAGAAGGCCGATAGCGCGAGCACGTCCCTGCTGTCGCCT CACCTGCACTTCGGCGAGCTTAGCGTGCGCAAGGTCTTCCACCTAGTTCGCATGAAGCAG CTCGTGTGGAGCAACGAGGGCAACCACGCTGCCGAGGAGAGCTGCACCCTGTTCCTCCGT TCCATCGGCCTGCGGGAGTACTCCCGGTACCTGAGCTTCAATCACCCGAGCAGCCATGAG AGGCCCCTCCTGGCGCACCTCAGGTTCTTCCCCTGGGTGGTGGACGAGAGCTACTTCAAG ATTTGGAGGCAGGGAAGGACCGGGTACCCGCTCGTCGACGCTGGCATGAGGGAGCTGTGG GCGACGGGGTGGCTGCATGACCGGATACGTGTGGTGGTGGCAAGCTTCTTCGTCAAGGTC CTCCAGCTTCCATGGCGATGGGGCATGAAGTACTTTTGGGACACGTTACTGGATGCTGAT CTTGAGAGCGATGCGCTGGGCTGGCAGTACATCACTGGCTCTCTTCCTGATGGCCGGGAG CTTGACCGCATCGACAACCCCCAGTTTGAAGGCTACAAGTTCGACCCGCATGGGGAGTAC GTCCGGCGATGGATTCCTGAGCTCGCAAGGCTGCCGACGGAGTGGATACACCATCCATGG GACGCGCCTGTCTCCGTGCTGCAAGCTGCAGGAATCGAGCTGGGCTCTAACTACCCTCTC CCCATAGTGGAGCTGGACGCGGCCAAGGGCAGGCTGCAAGCGGCCCTGTCAGAGATGTGG CAGCTGGAGGCGGCGTCGAGGGCCACCATGAACAACGGGACGGAGGAAGGCCTCGGCGAC TCCTCGGAGGTCCTGTTCCCTCAAGAGCTGCAGATGGAGGTCGACCGGCAGCCAGCCCCA GCCGAGGCAGCAGCCAACGTGCACGTGCACGTGCCGATGCCTGCCCGGAGGCGCGGGGAC CAGATGGTGCCCACCATGACGACCTCTTCGCTGAACAGAGCTGGAACAGAGGTCTCCGCC GATCTAGTAGTAGCGAACAGCGAGGAGGAGGACACCAGGGCGCAGGTTCCGTTCCACGCG CATCTCCATCTCCACCCCCGAGCCGAAGCCCCGCCAGCTGCGCGTAGAACCAACAACGGC GCTCGCCAGCACGACGTCTTCCAGCAGCGTCGGAACCACAGGCGAGATGCTCTGCTTGCT CCGTCGGCGTCGGAGGCTTCGAGCAGCTGGACCGGCAGAGAGGGCGCCGTGGTCCCGGTC TGGTCGCCTCCTGCGGCGTCGGGCCATTCGGACGCCTTCGCCGCCGACGAAGCTGACGTC TCTAGTAGGAGCTATCTGGGTAGGCATCCGCAGTCGCACCGCCTGATGAACTGGAGCCAA CTATCGCAGTCATCGTGAGCTCGGATGCACGCAGCAGAAGATTCTGTGCGGCCAAACTTA ATCGAGCTGAAGATTCTCGTATGTAGATTGTCCACTGAACTACTCATCCATAGTCTGATG GGATGGAAACCAGGCGGCTTTTCCTGGTTGTGGTGGCTATAGCTGTGTAAATCTCGTCTT CTAGAACGTGTGTGGTCGATATAGTGCGGTTGGCTTTAC