Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003378_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:2:42148757:42154279:-1 gene:Zm00001d003378 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:mediator of paramutation1 description: mediator of paramutation1
Sequence

ATGGATGTGTTTGGCTCCTCCTCCAATGTGGTTCCTCTTGTTGACTGCCCAAATGGCTTT
TCTGTGCCTTATGAAGTACTTTTTCGTCTGAACTCTCTTGTTCACATGGGGAAGCTAGTT
GCCAGGCATGTTAATGCTGATCTGTTTAAAGTCCTTGAAGATCTGTCAATCGATACTTTA
AGGAGAATATTTGAGAAAATGAGCAAATTAAAATCTACCTGCTATGAACCTTTGCAATTC
ATCAGACATGAGGCTCATAGCATGAATATGAGAAAGAAAGCCTTGTCCAACAAGAGGGAG
AGTGGAAAATTGATGAGGTGTTACAGAATTCACATCACACCATCAAAAATATACTGCTTG
GGGCCTGAGGAAGAAGTTTCAAATTACGTGGTTAAGTACCATTCTGAGTATGCTTCTGAC
TTTGCTCGAGTTACTTTTGTTGATGAAGATTGGAGCAAGCTTTCTCCCAATGCATTGTCA
GCTAGAACTGAACAAGGTTTCTTTTCTAAACCCTTGAAAACTGGCCTGTATCATCGTATT
CTCTCCATTCTAAAAGAAGGATTTTGCATTGGCCCCAAAAAATATGAATTTTTGGCCTTT
TCAGCAAGTCAGCTTCGTGGTAATTCTGTTTGGATGTTTGCTTCAAATAGTTCTCTGACT
GCTGAGAATATAAGGAGGTGGATGGGCCACTTTGAAGATATCCGTTCAGTCTCCAAGTGT
GCAGCTAGAATGGGCCAACTGTTTAGCTCATCCAGGCAAACATTTGAAGTCTCATCATAT
GATGTAGAAGTAATTCCAGATATTGAAGTCACAACTGATGGCACTAAATACATATTTTCA
GATGGTATCGGGAAGATTTCTACTAGATTTGCCAGACAAGTCGCCAAATTAATTGGCTTA
GACCCAGCTCATCCTCCTTCTGCTTTTCAAATAAGGTATGGGGGCTATAAAGGAGTCATC
ACTATTGACCCTACATCCTTTTTCAATCTTTCTCTGCGACCTAGTATGAAGAAGTTTGAA
TCGAAGAGCACTATGCTGAACATTACAAATTGGAGTAAGTCTCAGCCATGTTATGTGAAC
CGTGAAATTATCTCTCTTCTTTCAACATTGGGGATAAAGGATGAAGTATTTGAATCGATG
CAACAAGATGACATGCACGAATCAGATGGAATGCTAACAAATAAAGAAGCTGCTTTGTCT
GTCCTAGGGAAAATTGGTGGCGGTGATACCAAGACGGCAGCTGATATGCTTCTGCAAGGC
TATGAACCAAGTTCAGAGCCTTACCTATTAATGATTCTTAAAGCCCATCGGGCTAATAGG
CTGACCGACATAAGAACTCGGTGTAAGATTCATGTCCAGAAAGGCCGTGTTCTTATTGGT
TGTTTGGATGAAACTTGCAAATTAGAGTATGGCCAAGTTTACATCAGAATTACAAAGAAT
CACAAGGAGCAGAAGTACAGTGAACAGCCGTTCTTTTGCAACGATGATGGCAAAACAGCT
GTAATTGTAGGAAAAGTTGCAATCACAAAAAACCCTTGTCTCCATCCTGGTGATGTCAGA
GTACTTGAAGCTGTATATGACCCTGGATTGGATGCTAGGGGTCTTATTGATTGTGTTGTA
TTTCCTCAGAGAGGGGAAAGGCCTCATCCGAATGAATGCTCCGGGGGCGATTTGGATGGC
GACCTCTTCTTTATTACTTGGGATGACAAACTGATTCCGGAGAAGGTTGATGCACCTATG
GACTACACTGCAACGAGGCCACGCATAATGGACCATGCTGTTACACTTGAGGAAATTCAG
AAGCACTTCGTCAGTTACATGATAAACGATACCCTCGGTGCCATCTCCACCGCCCACTTG
ATCCACGCAGACCGTGATCCACTGAAAGCTCGCAGCCCCGAGTGCGTCCAGCTGGCCGCT
CTGCACTCCATGGCGGTCGACTTCGCCAAGACGGGAGCTCCAGCCGAGATGCCCCTGGCG
CTGAGGCCCCGGGAGTTTCCGGACTTCATGGAACGGTGGGAGAGGCCAATGTACGTCTCC
AACGGCGTCCTCGGCAAGCTCTACCGCGCTGCCCTGCGGCACGAGGAGGACGCAGAAGCG
CTCCTGCCTGCGGGCCCACCGAGCTGCGTGTACGACCCGGACCTCGAGGTCGCCGGTTTC
GACGAGTTCCTGGACGCAGCGGAGGAGCGGTACGAGGCGTACGCCGAGAGGCTGGGCGCC
CTGATGACCTACTACTCGGCGGAGCGCGAGGACGAGATTCTGACAGGCAACATCCGGAAC
AAGCTGGTGTACCTGCGGCGGGACAACAAGCGCTACTTCGAGATGAAGGACCGCATCATC
GCCGCCGTCGACGCGCTGCACGCGGAGGTGAGGGGGTGGCTCAGGGCGTGCAAGGAGGAC
GACGCGTCGAGGGTGGCGTCGGCGTGGTACCACGTGACCTACCACCCGGACCGCCGCGGG
GAGAAGCGGTTCTGGAGCTTCCCGTGGATCATCTGCGACACCCTGCTGGCCATCAAGGCG
GCGCGCAGGTGCCGGAAGCGGGTGGAAGACGCCGCCGTGCCCATGGACTGCGACGGTTCC
TAG

Peptide Sequence

PEP ID

Zm00001d003378_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:2:42148757:42154279:-1 gene:Zm00001d003378 transcript:Zm00001d003378_T018 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:mediator of paramutation1 description: mediator of paramutation1
Sequence

MDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSIDTL
RRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRESGKLMRCYRIHITPSKIYCL
GPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKTGLYHRI
LSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDIRSVSKC
AARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKLIGL
DPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVN
REIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIGGGDTKTAADMLLQG
YEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKN
HKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVV
FPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQ
KHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLA
LRPREFPDFMERWERPMYVSNGVLGKLYRAALRHEEDAEALLPAGPPSCVYDPDLEVAGF
DEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRII
AAVDALHAEVRGWLRACKEDDASRVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKA
ARRCRKRVEDAAVPMDCDGS

Transcript Sequence

Transcript ID

Zm00001d003378_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:42148757:42154279:-1 gene:Zm00001d003378 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:mediator of paramutation1 description: mediator of paramutation1
Sequence

GGGCACAAACCCCCAGCCGTCCGTGACATCGCCGGGATCCCGCCCGGACCTCACCCGGCG
ATATGTCGACGGCGGCTCCCGCGCCGGGCTCCACGGCCACGGTGCGGGTATCCAACATCC
CGGCCTCGGCCATCGCCGCAGAGCTGCTCGCCTTCTTTGACTCCGCCGTCACCATCGCTG
GCGCGACCTTCGCCTGCGAGATAGTCGCCGCTCACCGCGGCTGGCTCAGCCGCGGCCACG
GTTTCGTCCAGTTTGATTCCTCCGCCGCCGCCACCCACGCCATCGACCTCGCCTCCTCTG
GCCGCCTGCCCCCCTTCCTCGGCTCCTGCCTATCCGTCTCCCCCGCCCGCGCTGACCTCC
TGCCCCGCGCGCCCGACCTCTCCCTCCGCGCTGCCAGCGCGAGCCTCATTCTAGGCAACC
GCGTCGCCGAGCGCGAGCTGGAGGTGGCCTACTCCTGCGACGGCGTGCGGGCCGAGGTCA
TCCCGAGGATGCGGCGTGTGGACCTCTACCTGAAGCACGATTCCCAGAGCTACAAGCTTG
AGGTTCTCTTTGAGGACATCAATGAGTGCTTTGGGTGCCACCTCGATGGGACGGGCGCCA
TCTTGCTGCAGCAAAACTCGGGAAACGAAATGAACTAACCCCAAATATCAATAAAATGTC
CAGCAAAGAACAGCCTAGGAGGAAAACCACTCCACGGTAACCACCAGACACCTTTATAAG
CATTTTTCAGCTCACAACTGCTCTACCCCTTTTGACAGTTGAGGGATCATCTCCTCCACA
TCAACATATAATTGGACCTCAATTCTGGCCTAACAACCCAGTAGAATGGGAGCACAATAC
ATTTACATACCCGAGTGGGTTGCAGCCTGCAGATGGAGCTCCCTTCTTCCTCTAGCGCTG
CACAGAAGGATATTTTTGCAATCTTCTATGGCCTGCTATAGCATATGTTGTGTATCAGCG
TTCAAAACAATCACACTCTAGGTTTCCATATGATTCATTTATTGCATAATCTAGCCACTT
TCTATTTTTAATAACTACTCAACAATTTGAGATATGCACAATAAACTGAAATCCTCATAA
GGGATAAGATCTTTTACTTTGGAACTGATCATTAACCTGACTTATGCACCAAGAATACAC
ATTGCAATTTCTGGGTCTACAGTTAAATCAAGGTTTACAGATGATCGCTTTCATGCATGC
AAGGAGGACGCCAAATTTGCATGGGTCAGAGCACTAGATTTCACACCTAATAGCTCTTTT
GGCGAGTGTTCCACTCTTGTCCTGAAACTGAGCAAAGGTGCATCAGTATCATATATTCTT
GAAAGTTTACCCTTCTCAGGAGAATTAGGGGAATTGGCCATTGCTTCGATGGATGTGTTT
GGCTCCTCCTCCAATGTGGTTCCTCTTGTTGACTGCCCAAATGGCTTTTCTGTGCCTTAT
GAAGTACTTTTTCGTCTGAACTCTCTTGTTCACATGGGGAAGCTAGTTGCCAGGCATGTT
AATGCTGATCTGTTTAAAGTCCTTGAAGATCTGTCAATCGATACTTTAAGGAGAATATTT
GAGAAAATGAGCAAATTAAAATCTACCTGCTATGAACCTTTGCAATTCATCAGACATGAG
GCTCATAGCATGAATATGAGAAAGAAAGCCTTGTCCAACAAGAGGGAGAGTGGAAAATTG
ATGAGGTGTTACAGAATTCACATCACACCATCAAAAATATACTGCTTGGGGCCTGAGGAA
GAAGTTTCAAATTACGTGGTTAAGTACCATTCTGAGTATGCTTCTGACTTTGCTCGAGTT
ACTTTTGTTGATGAAGATTGGAGCAAGCTTTCTCCCAATGCATTGTCAGCTAGAACTGAA
CAAGGTTTCTTTTCTAAACCCTTGAAAACTGGCCTGTATCATCGTATTCTCTCCATTCTA
AAAGAAGGATTTTGCATTGGCCCCAAAAAATATGAATTTTTGGCCTTTTCAGCAAGTCAG
CTTCGTGGTAATTCTGTTTGGATGTTTGCTTCAAATAGTTCTCTGACTGCTGAGAATATA
AGGAGGTGGATGGGCCACTTTGAAGATATCCGTTCAGTCTCCAAGTGTGCAGCTAGAATG
GGCCAACTGTTTAGCTCATCCAGGCAAACATTTGAAGTCTCATCATATGATGTAGAAGTA
ATTCCAGATATTGAAGTCACAACTGATGGCACTAAATACATATTTTCAGATGGTATCGGG
AAGATTTCTACTAGATTTGCCAGACAAGTCGCCAAATTAATTGGCTTAGACCCAGCTCAT
CCTCCTTCTGCTTTTCAAATAAGGTATGGGGGCTATAAAGGAGTCATCACTATTGACCCT
ACATCCTTTTTCAATCTTTCTCTGCGACCTAGTATGAAGAAGTTTGAATCGAAGAGCACT
ATGCTGAACATTACAAATTGGAGTAAGTCTCAGCCATGTTATGTGAACCGTGAAATTATC
TCTCTTCTTTCAACATTGGGGATAAAGGATGAAGTATTTGAATCGATGCAACAAGATGAC
ATGCACGAATCAGATGGAATGCTAACAAATAAAGAAGCTGCTTTGTCTGTCCTAGGGAAA
ATTGGTGGCGGTGATACCAAGACGGCAGCTGATATGCTTCTGCAAGGCTATGAACCAAGT
TCAGAGCCTTACCTATTAATGATTCTTAAAGCCCATCGGGCTAATAGGCTGACCGACATA
AGAACTCGGTGTAAGATTCATGTCCAGAAAGGCCGTGTTCTTATTGGTTGTTTGGATGAA
ACTTGCAAATTAGAGTATGGCCAAGTTTACATCAGAATTACAAAGAATCACAAGGAGCAG
AAGTACAGTGAACAGCCGTTCTTTTGCAACGATGATGGCAAAACAGCTGTAATTGTAGGA
AAAGTTGCAATCACAAAAAACCCTTGTCTCCATCCTGGTGATGTCAGAGTACTTGAAGCT
GTATATGACCCTGGATTGGATGCTAGGGGTCTTATTGATTGTGTTGTATTTCCTCAGAGA
GGGGAAAGGCCTCATCCGAATGAATGCTCCGGGGGCGATTTGGATGGCGACCTCTTCTTT
ATTACTTGGGATGACAAACTGATTCCGGAGAAGGTTGATGCACCTATGGACTACACTGCA
ACGAGGCCACGCATAATGGACCATGCTGTTACACTTGAGGAAATTCAGAAGCACTTCGTC
AGTTACATGATAAACGATACCCTCGGTGCCATCTCCACCGCCCACTTGATCCACGCAGAC
CGTGATCCACTGAAAGCTCGCAGCCCCGAGTGCGTCCAGCTGGCCGCTCTGCACTCCATG
GCGGTCGACTTCGCCAAGACGGGAGCTCCAGCCGAGATGCCCCTGGCGCTGAGGCCCCGG
GAGTTTCCGGACTTCATGGAACGGTGGGAGAGGCCAATGTACGTCTCCAACGGCGTCCTC
GGCAAGCTCTACCGCGCTGCCCTGCGGCACGAGGAGGACGCAGAAGCGCTCCTGCCTGCG
GGCCCACCGAGCTGCGTGTACGACCCGGACCTCGAGGTCGCCGGTTTCGACGAGTTCCTG
GACGCAGCGGAGGAGCGGTACGAGGCGTACGCCGAGAGGCTGGGCGCCCTGATGACCTAC
TACTCGGCGGAGCGCGAGGACGAGATTCTGACAGGCAACATCCGGAACAAGCTGGTGTAC
CTGCGGCGGGACAACAAGCGCTACTTCGAGATGAAGGACCGCATCATCGCCGCCGTCGAC
GCGCTGCACGCGGAGGTGAGGGGGTGGCTCAGGGCGTGCAAGGAGGACGACGCGTCGAGG
GTGGCGTCGGCGTGGTACCACGTGACCTACCACCCGGACCGCCGCGGGGAGAAGCGGTTC
TGGAGCTTCCCGTGGATCATCTGCGACACCCTGCTGGCCATCAAGGCGGCGCGCAGGTGC
CGGAAGCGGGTGGAAGACGCCGCCGTGCCCATGGACTGCGACGGTTCCTAGACGGAGGTG
CCACTGTGGCAGTGAAGTGAGCCTGTGATGCGAGTGGAAACTGTAGTAATAAGATGCAGT
ACCGCTGAGCGCTGATTGCTGTAAAAAGAAGTTAGCGCGGGTTGTCTT