Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003352_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:2:41240785:41247758:1 gene:Zm00001d003352 gene_biotype:protein_coding transcript_biotype:protein_coding description:Per1-like family protein
Sequence

ATGACAGACTGTCGCTACTTTTGCATGACGCGGAGAGAAGGGGAACGGCAGGCACTTGGT
CTGAGCCCCGTTAAATATCATGGAAAGTGGCCGTTCTTACGCGTTTCTGTGTTCCAGGAA
CCCCTTTCAGCTGCACTTTCTGCTGTCAACCTACTGATGCACTTCACTGGCTGGCTTTCA
TTTTTTCTTCTAGTGAATTACCAATTGCCTCTTAGACCCCAGGCCAAGAGAACTTACTAT
GAATATACTAGCTTGTGGCATATCTATGCAATCTTATCAATGAACGCATGGTTCTGGAGC
TCTATTTTCCATACTCGAGACATTGACTTGACTGAGAAATTGGACTATTCTTCAGCTGTG
GCCCTGCTTGGCTACTCGTTGATCCTTTCGTTGCTAAGGGCTTTCAATGTCAAGGATGAG
GCTAGCAGGGTGATGTTTGCAGCCCCTATTTTGGCATTCGTTACGACGCACATCTTGTAT
CTTAACTTCTATGAGCTTGACTATGGGTGGAACATGAAAGTTTGTGTGGTGATGGCCGCG
GTTCAACTTCTGACGTGGGCAGTCTGGGCTGGTGTAAGCCGGCATCCGTCGCGGCTGAAG
GTCTGGACAGTTGTTTTCGGAGGAGCACTCGCCATGCTACTTGAACTCTACGACTTCCCT
CCATACATGGGTTACGCCGACGCCCATTCGCTGTGGCACGCAAGCACCATTCCGCTCACC
TGTCTCTTGTGGAGCTTCATCAAGGACGATGCCAAGTTCCGCACGGCAACACTCGTCAAG
AAGGCAAAGTAA

Peptide Sequence

PEP ID

Zm00001d003352_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:2:41240785:41247758:1 gene:Zm00001d003352 transcript:Zm00001d003352_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Per1-like family protein
Sequence

MTDCRYFCMTRREGERQALGLSPVKYHGKWPFLRVSVFQEPLSAALSAVNLLMHFTGWLS
FFLLVNYQLPLRPQAKRTYYEYTSLWHIYAILSMNAWFWSSIFHTRDIDLTEKLDYSSAV
ALLGYSLILSLLRAFNVKDEASRVMFAAPILAFVTTHILYLNFYELDYGWNMKVCVVMAA
VQLLTWAVWAGVSRHPSRLKVWTVVFGGALAMLLELYDFPPYMGYADAHSLWHASTIPLT
CLLWSFIKDDAKFRTATLVKKAK

Transcript Sequence

Transcript ID

Zm00001d003352_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:41240785:41247758:1 gene:Zm00001d003352 gene_biotype:protein_coding transcript_biotype:protein_coding description:Per1-like family protein
Sequence

GGGGCAGAGCTGGGGCTATCTCTTGAGCTGGTGGTCAGGTACTCAGGAGGTCATCCATGA
TCCATCCTGATTCTCCCTCGTCCTGCTCCCCTTTCCTTGGCCGGCCGGCGCGCGGAGTGG
AGGTCGACCGACATTGAATTCCCTCTTTCCTTCTTTGCCGCTCAATTGCCCCCTTGCTCC
GCGGGAAGCTGGCCACCGGTCCTGCCTGCGCAATCCATTTTGTTCGTACTATTATTGTGT
AACCATTGTGCTCCGTGGAGCCGTAGAGGTGGAGATCTGGGTTGCCATTTCCAGACCCTG
GCCGCGTCCGCTGCGATGGGTCGAAGCGTCTGGGCGGTTCCGTTGGCTTCCCTTCTTGCG
TTTGGTTTGGTGCTCGGCTCCGTCGAGGCCAGCCTCGGGGATGTTGATCCGCGTTACAGG
TGAGCTGCATCTCTGTGTGTCTCTCCTCAATCTCTACTTGTCTCCAGCAGTACTAATTAG
TTATGCACCGATTATTTTCTGTTGCTCAAGACATGAAGCAAAACCCTGCTTGATCTAGAT
TCTTGTAGGAGGATTTCCGATTTCATAGTCCCACTGTTGTTATTGTTAATCCGGTAAATC
TTGGACAGGACATAACATCTATGGTCTGTTTATGACATGTAAAGATAATGATGTGTTAGT
GTGTTACCGTTTGAATGTGGCTGATGACTACTCCCATGCTAGCTAGTTTGCTGCATAGTA
ATATATCAATTTGAAATAGGGTCCCTCAAAATAGATCACACGCGCACAGCTGAATCTCTG
CGGCAAACGGTCATTTGATTAAGTTAACACTTGCTTTCTATGCCAAGTGGAACATGTATC
AGTGTCTTATGAGACGAGATGTGAAGCAATAAGGCATGAGCTTTACTAGAACAACTTGAT
TGCCTGGTGTGTAATTTTGTAACAACGAGTTGGTTCTAGGATCCTAGCAAACATTACAAC
ATCAACTTGGAAATAAGAATTTGGTTAATTATGTCTTATTTGGATTTGATGACATATTAT
GAACTAAACTTGCTATCTCTACACCTAAAAAGACTCTGACGTCATCTCTTGGTGACACCA
AATCTTGATCCTTGCTCATGTGTCCGTGTTCGATATGAATCATCCTTCATTCACAGCTCA
TGTGTTGTCGTCCTACCCAATTTCGATACGAAAACCAGATCTCACGTCCGCATCCAATTA
CTGAGGTTTATGGCCATGGTGCAGTACACAGGCATATATCTAGTGTACCTAGAAAAGCCA
AAGCAACTTACAATTTCGGACAGAGGGAGTACTATTTGTGAGAATGCAATAAGTTTTGAA
TTTATTGAATTTGACCCTATGACTTGTATATTGTGTCCATTACATTACTAGGCTTTTGAG
GCTTGAGCATTGTGCCTGATAAAAACACTGCACGAAGGAAGCCTGAACCTTTGATGAGTT
TTGCTGGGCCAGGTTGTGATGGAAGGGAAGCCCTAGTTGTATTGGATAGGAAGTGATTAC
ATATTTACATATATATAGAGACCCAGGATAAACCCTAACCCTAATGGGTCGGGAGCCCAA
CAGTGGTGCCAACCCGGCTACGGATACATATAGGAAACACACACTCTACCCTCCCCTCGT
AATCGCAACGGCAGCACCGCAAACGATGAGACTGGAGCATAAGCCGAAGGTAGGAGCCGA
CGGGTTGAAATCCCTCACAGTCGCAGTGCTGTGAGGGTGCAAGTGTTGCGGCTGGAGCAG
AGGCCGATGTGCACTCCATGCAGATGATAGCCCCTGGATGCCGAGGTAGCTGAAGTCGAG
GTGGTGTGCAGCCTCGTTCTTCGAGGGGTAGACGTTCGAGCGTCAACAGTCGGCGGGGCG
ACACAATAAAAGAAGAGCAGCAGCAGACCGGGGACCTTCTTGCTTCTTCTATCATCCGGT
CGTCGAGGGGCCTTGCCAGGGAGGCCAGCGGCAGCACACACATCTGCGTCGGTCAGGATG
GTCGTGCCTGCGGTTGAATAGAAGGGGTATCGCTAGATCCGGCCTTGGAAGACCACGACA
GCGTCGGATCTAGCCATGAAGACGGCGATCCGGCCAAAGGGACGACAGATCCAGACGGGA
AGGTTGCGGCAGCAGTGGATCTGGCCAAGAAAGCCGTGACAGCAACGGATCCAACTGTGG
CGGCGACGAAGAATGGGGAGGGAAATGGGGCGGGTCCAACCGGGCAGTGGCCTGTACTGG
GCTTGGCAGGATTGGTTTGACGCCGACGTTGAAGGAGAGACGCGGGGCGCTGCTGAAGGG
TTAGGAGATGGCCGGCGGTGGCGCTGTGGAGGCAGCGCTGGCTGAAGGAGAGGCCGCCAC
ACGCGTTGGAAGAAGGGTCGGCGCTAGGAGGACGATAGCGACACCGGAAGAGTGGGGTTG
GCAGCACTTGTGCCGCCGAAGGTGAAGGGAGCCGCGACGGGGCGTAGGTCGGTCGACGTT
GTCCCGAGGGGGCTCGTGCAAGGAGGGGTCATGGAGCACTAGGGGGCTCGCGTAGGGAGC
TGGAGAGGGGGTGGGGCTGGGGAAGACTCCACAGGGGGAGGGTGCTGGGCTTGAGCCGGT
GGCGGAGGCGCCAGATCTGGCCTGTGACGGCACCGGTGGGGGCTTTCCTGTTGGCGCCCA
ACGGCGACCGCAGCAGCGCTGTTCCAGGCGGCGCGTCCACAGCGGCGACGTGGGTCCGGG
CGGATACGCCAGCGACGGAAGCAGAGGTCGGCGGCGCGCGAGGCCATGCAGACCGGCAGC
GGCGGCCCTGTCGTCCCTAGGGAGGAGTAGGGAGCCTGGCCGAGCTCCATGCCGGCGCTT
GGGAGGTGTAGGGGCAAGGCCAGCGTCAAGGAAGAAGAAGAGGTCGGCGCGTCCGCGCTG
GGGGTCCGAGCAGGCAAGGAAGGGACCCCCCCAGGGATGGAATAGCCTCCCAGGGGGCTG
GCGGCTAGGGGTGGAGAAGAGGGAAAACCTAGCCCTCTGATACCATGTTGGAAACCCTAG
TTGTATTGGATATGAAGTGATTACATATATATAGAGACCCAGGATAAACCATAAGACTAA
TGGGTTGGCAGCCCAACAGTGGTGCCAGCCCGTCTACGGATACATATAAGAACACACACT
CTAACAGGTTGTACCTTTTTTTGGTTGGTACTTGAGCTTGAGATTGAATTAAGTTGTACC
TATGTAATGGTATAAAATTAAAATATTACTAGCTCAATTTTTTGTTAGCTTTGATGTGCA
GGAATGGTAAATATGATTTCCAAAAATAGATAAATAATTATTTTAGAACATTTCGCCCAT
CATAGAGCATCATGTGTACGTATTCACTTTCCTGTGCATTGAACTAAAAGAAGAAAAAAG
AAAGGCATTTACAAGGCGAAGTGAGATATGTGATAGCATTATTGAGAATTTAATGAGGTG
AATCAACAGCAATTAACAGTTGCCCTGAACTGTGAGAATGGGTGTGAGAAACCAAACATG
TTACACAACCACGAGGGAATCAGGGATGCTACGGGCCAAAAGCATTGTCCTCAGGGTTCA
ATCCAAACAGACCCTACATGCGTGGTGATGGCTCATTAGCATGACTTCGAAATTCTAACT
GCTTCGGTTTTTTTAAGGGCGCTGTTGTCCACTCCATTCTAGTATTTTGTTACCAGCATA
GCACTTTCCAGATCAGAGTTAGAGGTTAATAACATGCTTTGTGGCATATTTTGTATATCT
AGTATTTCGTAGCTAAATTGTAATTTTCGCACCTATTCATCTCTCATGCTTTCGTCATAT
GTTCTGCTCAAAGTCCAAAAGACAACTTATGAATCACACCTATTCTGTTCCTAGTTTTTC
TGATGAATTTCACCAGATTCATGTTCGAGAAAAGAATTTAACTAGATTAATCGTTATGTA
AATTTGTAAAGAACAGAGCTGTTCTATCTGAAGCTTATCCCAATGTGCAATGGTAGCATC
ATGTTCACTTTTCTTAAATTTATAATGTCGATGGCGTATATTATTTGATTTCATAAAAAT
AAGTAGATCTATTTCTAAAAATCATGTAAACAACATATATAAGCAACATACCGCATAAGC
ATTGAGTCAGGGTGGTAGAGGCTAGTTGCCTGAAGGGAGGATTTAGGGTATGCTTGGTTT
CCTGCCCTGTTGAGCCAAAAGGGTTTCCCTTTTTGTAATGCTAACAGAAATGGTTAGCTT
TATTTCGCTTCCAAAAGTTAGCATGGCCCTAAAAAATTTAGCTGTGCCAATGTATTTTCA
CTACTGAGCGCAGATAAATTTGGGGATCGGGGTGAGCAAATGTCTCATCGAAGAACTGGC
ACCGCCAACAAAAGGTTCTGGGTGAAGTGGCATCTCTGAACTGGTTGCATGGACTTTGGA
ACCTTTTGGCTATCTAGGGCTTGTTTGGATTCAGCATTTCAGCCTCCACATGTCCTGTCA
TTAGATATACAAATCAAGGTCCATGTCGATTATGTTTTGACACAAGATGTAATGATATAT
TGGGCCCACATGTCATATATATTCAAGGTACTTTTGGCAGGCATGATTACAATGCAAACA
GCCCTCCGTTGCCAAAATCGTAGATATGGCTAGTCTTGGTCATGACCAAATCTTGGAAGG
ATTAATTGGGGCTCAAGACCAAACATGCCTGTGACCTAAGGCGCAATGCTTGTGACCAAG
AATTTTGAAAACTTTGGTCAATGTTATATTCTTACAATCTCCAGATTTAGTTTCTCTAAG
AAGATATATGTCATATGTTGTGGGGCAGGCATATTGTAAGGTATGCCTAAAGGTATTATA
ACCCTTTGCCTGTTGTGGTTATACTCTATGTTTGCGGTATTCATTTCCTGTAGGCTCCTT
TCATTTTGTAAATATCAAATACCAATATCACTCTTGGAATTTGAAAGTGATTGTTAGTAA
CATTTACATTATTTGATTTCATGAAACACTAGCTGAATAGATTTTTCCATTTGCCATAAG
TAGCACATGCACTGAATTGCCACATTATTTGTCCATCTTATTCAATGCCTTTGCTTTATG
AATTACTTCGCCTTACTACTATTAAGAGCTTATGAAAATCTTTATTTTTCTGACCAACCT
TCAGAACTTGTGTGAGGGAGTGTCAAACTACAGGGATTATTGGGGAGAACGTGATCAGCC
ATTGTCAGTTCAAAGAGGACAACACTTCTGTTGGAGGCTCTTGGTATAACCAGGAGCAAA
TTTATATCCAGTGGAAAGAACTGAACTGTATGACAGACTGTCGCTACTTTTGCATGACGC
GGAGAGAAGGGGAACGGCAGGCACTTGGTCTGAGCCCCGTTAAATATCATGGAAAGTGGC
CGTTCTTACGCGTTTCTGTGTTCCAGGAACCCCTTTCAGCTGCACTTTCTGCTGTCAACC
TACTGATGCACTTCACTGGCTGGCTTTCATTTTTTCTTCTAGTGAATTACCAATTGCCTC
TTAGACCCCAGGCCAAGAGAACTTACTATGAATATACTAGCTTGTGGCATATCTATGCAA
TCTTATCAATGAACGCATGGTTCTGGAGCTCTATTTTCCATACTCGAGACATTGACTTGA
CTGAGAAATTGGACTATTCTTCAGCTGTGGCCCTGCTTGGCTACTCGTTGATCCTTTCGT
TGCTAAGGGCTTTCAATGTCAAGGATGAGGCTAGCAGGGTGATGTTTGCAGCCCCTATTT
TGGCATTCGTTACGACGCACATCTTGTATCTTAACTTCTATGAGCTTGACTATGGGTGGA
ACATGAAAGTTTGTGTGGTGATGGCCGCGGTTCAACTTCTGACGTGGGCAGTCTGGGCTG
GTGTAAGCCGGCATCCGTCGCGGCTGAAGGTCTGGACAGTTGTTTTCGGAGGAGCACTCG
CCATGCTACTTGAACTCTACGACTTCCCTCCATACATGGGTTACGCCGACGCCCATTCGC
TGTGGCACGCAAGCACCATTCCGCTCACCTGTCTCTTGTGGAGCTTCATCAAGGACGATG
CCAAGTTCCGCACGGCAACACTCGTCAAGAAGGCAAAGTAATTAAGCAAAGGGCCACACT
GTTAAGATATAGGGTCTGGGACCCATCGTGTACACGAGGAGCGGTTTGGGGCACACGTGT
TATACCGGACATCATGAAACCTCCAGTATATTTGCTCCCCCCCCCCCCATGATGCTCCTG
TGTCCTGTCCTGTCTCCCCTCCACTCACGAATTTTGTCCACAAACTCAGCGTATTCTTTA
GGGCGCATGTTCTGCCATTACGATCCGCCTTCTTACCTGAATGTGTAAAACTCAGGGAAT
TTTAGAATGTGTTGGTGGGCTTTGCTAGATTTTGTCATCGCCGAATCAGTTTTGCATTGT
GGAATCAGACAGGACAATGGACATCATCGGTGTGTTTGAGTGT