Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003256_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:38086415:38091164:1 gene:Zm00001d003256 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
Sequence

ATGATTAAGCAGATCCTTGGCAGGCTGCCGAGGAAGCCGGGGAAGGCTGGGGATAGCCGG
GAAGCTGCTGCTGCGGGGAATGGAACTGAGCCGTCGAATTCCTACAGTGTTGTGAGGGGC
ATGGACCCAGGGAACAAGAGGGCTGGAAATGGAGACTATCCAGTTCCATCTGGTCTAACT
TCTAACCCAGTGATGAATGGGGCTGTGGTGTATCACTCCAGTGAGCCGTTACCGGCATTC
AAGGATGTGCCGGCATCAGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTATGCTGT
GCTGTGTATGACTTCGCGGATCCAACTAAGAACCTCAAGGAGAAGGAGGTGAAGCGTCAG
ACACTTATGGAGCTTGTTGATTACATCACTTCTGCGAATGGCAAGTTCTCAGAGGTTGTC
ATGCTGGAGATCACAAAGATGGTGTCGATTAATTTGTTCCGGAGCTCCAGCCCCACCCCT
CGTGAGAACAAGGCCATTGAAGGGGTTGATCTGGAGGAGGACGAGCCTCTCATGGATCCT
GCATGGTCGCACCTGCAGATCGTGTATGAGGTTTTCTTGAGATTTGTAGCATCACAGGAG
ACAGATGCAAAGCTGGCCAAGAGGTATATAGACCATTCCTTCATTCTTAGGCTGCTAGAC
CTTTTTGACTCGGAGGACCCCAGGGAAAGGGATTATCTAAAGACGATACTTCATCGAATA
TATGGTAAATTCATGGTTCATCGACCATTCATCAGGAAAGCAATTAACAACATATTCTAC
AGGTTTATATTCGAAACAGAGAAACATAATGGTGTTGCAGAGTTGTTGGAGATCCTGGGC
AGTATTATCAATGGGTTTGCCCTTCCGCTTAAGGAAGAGCACAAATTATTCCTTGTTCGT
GCATTGATCCCTCTTCACAAGCCAAAATGTGTATCTATGTACCATCAGCAGCTATCATAT
TGCATCACACAGTTTGTTGAGAAGGATTGCAAACTTGCTGACACAGTTATTAGAGGCTTA
CTTAAATATTGGCCTGTGACAAACAGCTCAAAGGAGGTGATGTTCTTGGGTGAGTTAGAA
GAGGTTTTAGAGGCAACACAGCTTGCAGAGTTCCAAAGATGCATGGTTCCACTCTTCCGT
CAGATTGCCCGTAGCATGAACAGCTCTCATTTCCAGGTGGCAGAGCGGGCCTTGTTTCTC
TGGAACAATGACCATATCGAAAACCTAATCAAGCAAAACTACAAGGTGCTATTACCTATC
ATCTATCCAGCACTCGAGAGAAACTCCAGAGATCACTGGAACCAAGCTGTCCGTAGCCTG
ACGCTGAATGTCCGCAAGATCTTCTCTGATCACGATTCTGCATTTTTTGGGGAGTGCGAT
CAGAGGTTCAGTGACGAGGAGCTCAAGCAGGAGGAATCTGATTCGAAGCGAGAAGCCCTA
TGGATGCGCTTGGAGGAAATGGCCGCCTCAAAACCTCGCGAAAACAGTCCCTTAGGCGCA
CCGAATGGCAAACCCAGCCAAGCTGCTGGCTAG

Peptide Sequence

PEP ID

Zm00001d003256_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:38086415:38091164:1 gene:Zm00001d003256 transcript:Zm00001d003256_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
Sequence

MIKQILGRLPRKPGKAGDSREAAAAGNGTEPSNSYSVVRGMDPGNKRAGNGDYPVPSGLT
SNPVMNGAVVYHSSEPLPAFKDVPASEKQNLFVKKVNLCCAVYDFADPTKNLKEKEVKRQ
TLMELVDYITSANGKFSEVVMLEITKMVSINLFRSSSPTPRENKAIEGVDLEEDEPLMDP
AWSHLQIVYEVFLRFVASQETDAKLAKRYIDHSFILRLLDLFDSEDPRERDYLKTILHRI
YGKFMVHRPFIRKAINNIFYRFIFETEKHNGVAELLEILGSIINGFALPLKEEHKLFLVR
ALIPLHKPKCVSMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSSKEVMFLGELE
EVLEATQLAEFQRCMVPLFRQIARSMNSSHFQVAERALFLWNNDHIENLIKQNYKVLLPI
IYPALERNSRDHWNQAVRSLTLNVRKIFSDHDSAFFGECDQRFSDEELKQEESDSKREAL
WMRLEEMAASKPRENSPLGAPNGKPSQAAG

Transcript Sequence

Transcript ID

Zm00001d003256_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:38086415:38091164:1 gene:Zm00001d003256 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
Sequence

CTCCCCTTGAAGTCGCAGCCTCGCAGCAGGCTTGCGCAAGCTTTTACTCCTCAGTCCTGC
TCCATCTGCCTTTGCTACTTTTGGGGGACCTCCACGCCCCTCAAATCCAGAGAACAAAAA
GGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGGGAGGCAGAGAGCTTGCCAT
CCCAAGCAAAGGTTCCCTCCTTCCCCACCTCGCGCTCAACCCCCCTCATCCTCGCACATC
CGATTGTGCCCTGTGCTCTGCCGTTCTCTTATCCAAGATTTCGCTGGCGGCGGCTCAGGG
AGCGAACAAAGATTGTTTTTTTTTTCGGGCTATGGAGACGAGGCCTGATTCATTCAGGCC
CGGGCGGTGGAGTGGCTTCCTGACCGGGTCTGATTCGTATTGGTTCAAATGATCTGGGCG
GCTTAATTGGTTGCATCCGCTTCCGCCGGGGAATCGGAGCTAGGGCTGTGGTTTGTTGGC
CGGCTGGTGGATTTGTCGGCTTGGGTCTGGTGAGATCTGGAGGGTTTCTGGTTCAGCGCA
CGGGCCGCAGGTCTGCGTAGATCCCCTCTTCGATTCCGTGGCGGATTTGTTTAGGGTTTT
GGTTTGAGTCTGGTGGAACATGATTAAGCAGATCCTTGGCAGGCTGCCGAGGAAGCCGGG
GAAGGCTGGGGATAGCCGGGAAGCTGCTGCTGCGGGGAATGGAACTGAGCCGTCGAATTC
CTACAGTGTTGTGAGGGGCATGGACCCAGGGAACAAGAGGGCTGGAAATGGAGACTATCC
AGTTCCATCTGGTCTAACTTCTAACCCAGTGATGAATGGGGCTGTGGTGTATCACTCCAG
TGAGCCGTTACCGGCATTCAAGGATGTGCCGGCATCAGAGAAGCAGAATTTGTTTGTCAA
GAAGGTGAACCTATGCTGTGCTGTGTATGACTTCGCGGATCCAACTAAGAACCTCAAGGA
GAAGGAGGTGAAGCGTCAGACACTTATGGAGCTTGTTGATTACATCACTTCTGCGAATGG
CAAGTTCTCAGAGGTTGTCATGCTGGAGATCACAAAGATGGTGTCGATTAATTTGTTCCG
GAGCTCCAGCCCCACCCCTCGTGAGAACAAGGCCATTGAAGGGGTTGATCTGGAGGAGGA
CGAGCCTCTCATGGATCCTGCATGGTCGCACCTGCAGATCGTGTATGAGGTTTTCTTGAG
ATTTGTAGCATCACAGGAGACAGATGCAAAGCTGGCCAAGAGGTATATAGACCATTCCTT
CATTCTTAGGCTGCTAGACCTTTTTGACTCGGAGGACCCCAGGGAAAGGGATTATCTAAA
GACGATACTTCATCGAATATATGGTAAATTCATGGTTCATCGACCATTCATCAGGAAAGC
AATTAACAACATATTCTACAGGTTTATATTCGAAACAGAGAAACATAATGGTGTTGCAGA
GTTGTTGGAGATCCTGGGCAGTATTATCAATGGGTTTGCCCTTCCGCTTAAGGAAGAGCA
CAAATTATTCCTTGTTCGTGCATTGATCCCTCTTCACAAGCCAAAATGTGTATCTATGTA
CCATCAGCAGCTATCATATTGCATCACACAGTTTGTTGAGAAGGATTGCAAACTTGCTGA
CACAGTTATTAGAGGCTTACTTAAATATTGGCCTGTGACAAACAGCTCAAAGGAGGTGAT
GTTCTTGGGTGAGTTAGAAGAGGTTTTAGAGGCAACACAGCTTGCAGAGTTCCAAAGATG
CATGGTTCCACTCTTCCGTCAGATTGCCCGTAGCATGAACAGCTCTCATTTCCAGGTGGC
AGAGCGGGCCTTGTTTCTCTGGAACAATGACCATATCGAAAACCTAATCAAGCAAAACTA
CAAGGTGCTATTACCTATCATCTATCCAGCACTCGAGAGAAACTCCAGAGATCACTGGAA
CCAAGCTGTCCGTAGCCTGACGCTGAATGTCCGCAAGATCTTCTCTGATCACGATTCTGC
ATTTTTTGGGGAGTGCGATCAGAGGTTCAGTGACGAGGAGCTCAAGCAGGAGGAATCTGA
TTCGAAGCGAGAAGCCCTATGGATGCGCTTGGAGGAAATGGCCGCCTCAAAACCTCGCGA
AAACAGTCCCTTAGGCGCACCGAATGGCAAACCCAGCCAAGCTGCTGGCTAGAATAGCCC
ACCATATCAGCCGCAGCCGTGTAACTCTGACTCTGGGTTGTGATTTTAGCTTTGGGACTT
TTTTTTGTCGTTGGTTTGCCTCTGGCCCTGTTGTAGGTGGGTAGGATGTGTTTGGTTTTG
TCAGGACTGTATGTTCAAAGTGTACACATACAGAGGAATTTGAGAGATTTGGCATGTGTA
GTAACATTACTCAGGATTACCATATAGCCCAATAAACAACGTCGATTTTGATTGCAAATA
CCTAGTTTGGGTGGTTTATATACCGAAATGACAATGAGCGATGTGTTCTTGT