Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003214_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:2:36238543:36251578:-1 gene:Zm00001d003214 gene_biotype:protein_coding transcript_biotype:protein_coding description: protoporphyrinogen IX oxidase2
Sequence

ATGCATTCCCAGCATTGTGGAATTTGGAAAGAAATTATTGTTGGTGCCATCTTGTCTAAG
CTAGCAGCTAAAGGTGATCCAGTAAAGACAAGACATGATTCATCAGGGAAAAGAAGGAAT
AGACGAGTGTCGTTTTCATTTCATGGTGGAATGCAGTCACTAATAAATGCACTTCACAAT
GAAGTTGGAGATGATAATGTGAAGCTTGGTACAGAAGTGTTGTCATTGGCATGTACATTT
GATGGAGTTCCTGCACTAGGCAGGTGGTCAATTTCTGTTGATTCGAAGGATAGCGGTGAC
AAGGACCTTGCTAGTAACCAAACCTTTGATGCTGTTATAATGACAGCTCCATTGTCAAAT
GTCCGGAGGATGAAGTTCACAAAAGGTGGAGCTCCGGTTGTTCTTGACTTTCTTCCTAAG
ATGGATTATCTACCACTATCTCTCATGGTGACTGCTTTTAAGAAGGATGATGTCAAGAAA
CCTCTGGAAGGATTTGGGGTCTTAATACCTTACAAGGAACAGCAAAAACATGGTCTGAAA
ACCCTTGGGACTCTCTTTTCCTCAATGATGTTCCCAGATCGAGCTCCTGATGACCAATAT
TTATATACAACATTTGTTGGGGGTAGCCACAATAGAGATCTTGCTGGAGCTCCAACGTCT
ATTCTGAAACAACTTGTGACCTCTGACCTTAAAAAACTCTTGGGCGTAGAGGGGCAACCA
ACTTTTGTCAAGCATGTATACTGGGGAAATGCTTTTCCTTTGTATGGCCATGATTATAGT
TCTGTATTGGAAGCTATAGAAAAGATGGAGAAAAACCTTCCAGGGTTCTTCTACGCAGGA
AATAACAAGGATGGGCTTGCTGTTGGAAGTGTTATAGCTTCAGGAAGCAAGGCTGCTGAC
CTTGCAATCTCATATCTTGAATCTCACACCAAGCATAATAATTCACATTGA

Peptide Sequence

PEP ID

Zm00001d003214_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:2:36238543:36251578:-1 gene:Zm00001d003214 transcript:Zm00001d003214_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description: protoporphyrinogen IX oxidase2
Sequence

MHSQHCGIWKEIIVGAILSKLAAKGDPVKTRHDSSGKRRNRRVSFSFHGGMQSLINALHN
EVGDDNVKLGTEVLSLACTFDGVPALGRWSISVDSKDSGDKDLASNQTFDAVIMTAPLSN
VRRMKFTKGGAPVVLDFLPKMDYLPLSLMVTAFKKDDVKKPLEGFGVLIPYKEQQKHGLK
TLGTLFSSMMFPDRAPDDQYLYTTFVGGSHNRDLAGAPTSILKQLVTSDLKKLLGVEGQP
TFVKHVYWGNAFPLYGHDYSSVLEAIEKMEKNLPGFFYAGNNKDGLAVGSVIASGSKAAD
LAISYLESHTKHNNSH

Transcript Sequence

Transcript ID

Zm00001d003214_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:36238543:36251578:-1 gene:Zm00001d003214 gene_biotype:protein_coding transcript_biotype:protein_coding description: protoporphyrinogen IX oxidase2
Sequence

GCGGACAGCCTGAGTCCACCCCCCGTCCCTTTCCCTCTCCTACCTCCACCTCCACGACAA
CAAGCAAATCCCCATCCAGTTCCAAACCCTAACTCAAATGCTCGCTTTGACTGCCTCAGC
CTCATCCGCTTCGTCCCATCCTTATCGCCACGCCTCCGCGCACACTCGTCGCCCCCGCCT
ACGTGCGGTCCTCGCGATGGCGGGCTCCGACGACCCCCGTGCAGCGCCCGCCAGATCGGT
CGCCGTCGTCGGCGCCGGGGTCAGCGGGCTCGCGGCGGCGTACAGGCTCAGACAGAGCGG
CGTGAACGTAACGGTGTTCGAAGCGGCCGACAGGGCGGGAGGAAAGATACGGACCAATTC
CGAGGGCGGGTTTGTCTGGGATGAAGGAGCTAACACCATGACAGAAGGTGAATGGGAGGC
CAGTAGACTGATTGATGATCTTGGTCTACAAGACAAACAGCAGTATCCTAACTCCCAACA
CAAGCGTTACATTGTCAAAGATGGAGCACCAGCACTGGTAAAAGGGCTTTGATGTAATCA
TGCATGTCTCTCTTTTCGTCATGTATTCTGCCTCACTTTTGAATATCCTGCCTTTTGGTC
TCATAAGATTCCTTCGGATCCCATTTCGCTAATGAAAAGCAGTGTTCTTTCGACAAAATC
AAAGGTATGTTCAGCCATTGAGTACAAACTGCCGAGTGCCGACTAACAAAATGTCATAAC
ATTGCTAGTATCAATGCCTACCATCATCAATTGAAGTAGTTTGTTAGTTACTTTAAGGTA
ACTACTTGATAAATTCTTATATTCCTCCATTTATTTTTCCTTCAAGCTATGTGTTTATGA
TCTGCGGTGATTATGTCATTTTATTCTAAAAAAAACTCGACCTGCGGAGGGTAAGACAAC
CCCTGGACATTATATTAAGAAGACCTTCTCAAGTGGGTTGAGAAAACCCTCAAACCCCTG
CTCCACCCATACACAGCGGCACCGTAGCCCATGTGAGAATGACAGCGATTGGGGCCATGC
ATTAGACCTGTGCTTTGGCGTGGGACGGACGAGGGGATTTCCCCCGAACCCCTGCCGTAG
CCCATGTGAGAATGACCGCAACTAGGGCCGGACATTAGACTTGTGCTTTAGCGTGGAACA
GATGAGGAGATTTCCCCCCGAACCTCTGCCACACCCATACACAACGGCACTGTAGCCCAT
ATGAGAATGACCGCGACCAGAGCCGGACATTAGACATGTTCTTTGGCGTGGGACAGACGA
GTGGAATTTTTAACCTTAGATTGAAATTCACTCTCACAGGGAGTTGAACTCAGGACATGA
GGGTGCTACTCAGACCACGTAACCAACTCAGTTAGAGGCCTTCGTATGTCATTATGTTTT
AACTGAATTATGTTTTATCTGTGGCTCTTTGAAGATTGCGTTATTTTTTGAACCATTTCT
CTACAAGAAAGCTAACACAAGAAACTCTGGAAAAGTGTCTGAGGAGCACTTGAGTGAGAG
GTGAACCTTCGTATTCTTCGTGTCTTGCATTGATATGAAATTTAAAATTGCAATCATATA
TCAATATATCATACTAGTATTATTTTCTTTAAGTAAGTCTTGAGCTATGCGTTATACCTA
TCGATTCCTCATTATTTTCAAATTCTGAAAATCAATATTATGGTATCCCATATAATATAC
ACCATTGCAGTGTTCTCTTTTGAGTGTAGAGAACTAGAGATAATAGAATTATCTTGTTTG
AAAACATTTGCAGTGTTGGGAGCTTCTGTGAACGCCACTTTGGAAGAGAAGTTGTTGACT
ATTTTGTTGATCCATTTGTAGCTGGAACAAGTGCAGGAGATCCAGAGTCACTATCTATTC
GTCATGCATTCCCAGCATTGTGGAATTTGGAAAGAAATTATTGTTGGTGCCATCTTGTCT
AAGCTAGCAGCTAAAGGTGATCCAGTAAAGACAAGACATGATTCATCAGGGAAAAGAAGG
AATAGACGAGTGTCGTTTTCATTTCATGGTGGAATGCAGTCACTAATAAATGCACTTCAC
AATGAAGTTGGAGATGATAATGTGAAGCTTGGTACAGAAGTGTTGTCATTGGCATGTACA
TTTGATGGAGTTCCTGCACTAGGCAGGTGGTCAATTTCTGTTGATTCGAAGGATAGCGGT
GACAAGGACCTTGCTAGTAACCAAACCTTTGATGCTGTTATAATGACAGCTCCATTGTCA
AATGTCCGGAGGATGAAGTTCACAAAAGGTGGAGCTCCGGTTGTTCTTGACTTTCTTCCT
AAGATGGATTATCTACCACTATCTCTCATGGTGACTGCTTTTAAGAAGGATGATGTCAAG
AAACCTCTGGAAGGATTTGGGGTCTTAATACCTTACAAGGAACAGCAAAAACATGGTCTG
AAAACCCTTGGGACTCTCTTTTCCTCAATGATGTTCCCAGATCGAGCTCCTGATGACCAA
TATTTATATACAACATTTGTTGGGGGTAGCCACAATAGAGATCTTGCTGGAGCTCCAACG
TCTATTCTGAAACAACTTGTGACCTCTGACCTTAAAAAACTCTTGGGCGTAGAGGGGCAA
CCAACTTTTGTCAAGCATGTATACTGGGGAAATGCTTTTCCTTTGTATGGCCATGATTAT
AGTTCTGTATTGGAAGCTATAGAAAAGATGGAGAAAAACCTTCCAGGGTTCTTCTACGCA
GGAAATAACAAGGATGGGCTTGCTGTTGGAAGTGTTATAGCTTCAGGAAGCAAGGCTGCT
GACCTTGCAATCTCATATCTTGAATCTCACACCAAGCATAATAATTCACATTGAAAGCGT
CTGACCTATCCTCTAGCAGTTGTCGACAAATTTGTCCAGTTCATGTACAGTAGAAACCGA
TGCGTTGCAGTCTCAGAACATCTTCACTTCAGATATTAACCCTTCGTTGAACATCCACCA
GAAAGGTAGTCACATGTGTAAGTCGGAAAATGAGGTTAAAAACTATTATGGTGGCCGAAA
TGCTCTTTTTTGTTTTCCTCACAAGTGGCCTACGACACTTGATGTTGGAAATACATTTAA
ATTTGTTGAATTGTTTGAGAACACATGCGTGACGTGTAATATTTGCCTATTGTGATTTTA
GCAGTAGATTCTTTG