Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003213_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:2:36131338:36135502:-1 gene:Zm00001d003213 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGCTCGGACCTCGTCCGCCCCCGTGTTGCCGCCCACGCGCTCGTGTCTGCCGCAGCG
CGCGGCTTCGTCGACGTGGTCGACACGCTCATCAAGTGTGGAGCTGATCCAAACGCGACC
GCCCGGGTGCTCCTGCGGTCGCTGAAGCCATCCCTGCACGCCAACGTCGACTGCACGGCG
CTCTTTGCAGCAATCGTGAGCCGTCAAGTCGCTGTGGTCCGCCATCTGCTTCAGGCCGGC
GTGAAGAGGGACACGAAGGTGAGGCTGGGAGCGTGGTCCTGGGACGCGTCCACCGGCGAG
GAGCTGCGCGTCGGCGCCGGACTCGCCGAACCTTACGACGCGGTATGGTGCGCCGTGGAG
TACTACGAGTCCACGGGCTCCATCCTACGCATGCTCCTCCGTAGCGGGTTCACGTCGACT
GCCGCTCACCTCGGCCGGACGCTCCTCCACCACGCCATCCTATGCGGCAGCGCTGGTGCC
GTCCAGACCTTGCTGGCGTCCGGTGCAGACTCGGAAGCTCCCGTGAAGACGACCAGGAGC
AACAGGTCCAGGCCGGTTCACCTGGCCGCGCGCCTCGGCCAGCCGGAGATCCTGCGGATG
CTGGCTGACAGGGGCTGCGACCTGAACGCGAGGGCGGAGGCTGGCGACACTGCCGCCATC
ATCTGCTCGCGCCACAAACGCGAGGACTGCCTCCGAGTTCTCGTGTCCGCCGGTGCAGAT
GTCGCGCTGTTAAACTCGGCTGGCGACTCGTCGGCCTCCGTCGCTTCCTCTGGGGGATGG
AAGACCGGCTTCGAACGGGCTGTTATTGGCGCGATTCGGTGCGGGGCCGTCCCACGCTCC
AGCGAACGGAGCGTGTTCTCCCCGCTGATGTTCGGCGCGCTGTGCGGCGACGCGACCGCG
ATGGAAGTGCTGCTCTCTCAACCAGACGTGGACGTGGACGAGCAGGATTCGGACGGATGC
TCGCCCATAATGGCTGCTGCCAAGATGGGAAACGTCGAGGCCTTCCGCGCCCTCGTATTC
GCCGGCGCCAACGTGAAGCTGAGCAACAAGCGCGGGGAGACGGCCATCGGGCTGGCGCAG
CAGAGCAAGAAGAGAGACCTCTTCGAGCAGGTCATGCTCGAGCTCGCGCTGGAGAAGGGC
ATGCCTGGAGGCTTCTACGCGCTTCACTGCGCCTCCCGGCGCGGCGACACCGCGGCGGTG
CGCCACCTCGCCAGCACGGGCTGCGACGTCAATATCCCCGACGGTGACGGCTACACCCCG
CTGATGCTCGCGGCCAGGGAAGGCCACGCGGGCGTGTGCGAGCTTCTCATCTCCTACGGC
GCTCGCTGCGACCTCCGGACGCCGCGCGGCGAGACGGCGCTCTCCCTGGCGCGAGCAGCG
CTGGCTACGGCGGCGTTCAACAAGGCCGAAGACGTGATCATGGACGAGATGGGCCGGCAG
GCGGTCCTTCAGGGCGCGCGCGTCAGGAAGCACACCAAGGGCGGACGCGCGAGGCCTCAC
GGCAAGTCGCTGCGCATGGTCGCTGCGGCGGGCGTGCTCCGGTGGGGCGGGTCAAGCCGG
CGCAACGTGATCTGCCGGGAGGCCGAGGTCGGTGGCAGCTCGGCGTTCCAGCGGCACAGG
CAGAGGAAGGGGGACGCGTATGAGCCGGGGCTGTTCCGCGTGGTGACTGCGACAGGGAGG
GAGGTGCACTTCGTGTGCCAGGGCGGTAAGGAGGCCGCGGAGCTGTGGGTGAGGGGCATC
AGGGCCGTCACCAGGGCGGCGTTTGGCAAGAGAGGCAAGGAGTGA

Peptide Sequence

PEP ID

Zm00001d003213_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:2:36131338:36135502:-1 gene:Zm00001d003213 transcript:Zm00001d003213_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGSDLVRPRVAAHALVSAAARGFVDVVDTLIKCGADPNATARVLLRSLKPSLHANVDCTA
LFAAIVSRQVAVVRHLLQAGVKRDTKVRLGAWSWDASTGEELRVGAGLAEPYDAVWCAVE
YYESTGSILRMLLRSGFTSTAAHLGRTLLHHAILCGSAGAVQTLLASGADSEAPVKTTRS
NRSRPVHLAARLGQPEILRMLADRGCDLNARAEAGDTAAIICSRHKREDCLRVLVSAGAD
VALLNSAGDSSASVASSGGWKTGFERAVIGAIRCGAVPRSSERSVFSPLMFGALCGDATA
MEVLLSQPDVDVDEQDSDGCSPIMAAAKMGNVEAFRALVFAGANVKLSNKRGETAIGLAQ
QSKKRDLFEQVMLELALEKGMPGGFYALHCASRRGDTAAVRHLASTGCDVNIPDGDGYTP
LMLAAREGHAGVCELLISYGARCDLRTPRGETALSLARAALATAAFNKAEDVIMDEMGRQ
AVLQGARVRKHTKGGRARPHGKSLRMVAAAGVLRWGGSSRRNVICREAEVGGSSAFQRHR
QRKGDAYEPGLFRVVTATGREVHFVCQGGKEAAELWVRGIRAVTRAAFGKRGKE

Transcript Sequence

Transcript ID

Zm00001d003213_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:36131338:36135502:-1 gene:Zm00001d003213 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GATGCTCATTTCGCCACGCCCTGTTCGATGCTACTGCCCCTTATCTTTAGTGTCTGTAGG
CCAAGGAGAGTAAAGAGAAGGAATGCTACTATAGTAAAAAAAAATGTAGAAGCAATCAGT
GTAGGCAAAGGGAGCGGACGTGAACGGCAAGGTGTTCCGGGGCTACCCGACGACGGCCGC
GGCACGGGAAGGGTGCGCGGAGGTGGCGGAGCTGCTTGTGCGTGCGGGCGCGTCGCAGCC
GGCCTGCGAAGAGGCCGTCGTCGAGGCTGCGTTGCAGGGACAGGCGGCCCTCGCGGCCAT
CTTCATGGGCTCGGACCTCGTCCGCCCCCGTGTTGCCGCCCACGCGCTCGTGTCTGCCGC
AGCGCGCGGCTTCGTCGACGTGGTCGACACGCTCATCAAGTGTGGAGCTGATCCAAACGC
GACCGCCCGGGTGCTCCTGCGGTCGCTGAAGCCATCCCTGCACGCCAACGTCGACTGCAC
GGCGCTCTTTGCAGCAATCGTGAGCCGTCAAGTCGCTGTGGTCCGCCATCTGCTTCAGGC
CGGCGTGAAGAGGGACACGAAGGTGAGGCTGGGAGCGTGGTCCTGGGACGCGTCCACCGG
CGAGGAGCTGCGCGTCGGCGCCGGACTCGCCGAACCTTACGACGCGGTATGGTGCGCCGT
GGAGTACTACGAGTCCACGGGCTCCATCCTACGCATGCTCCTCCGTAGCGGGTTCACGTC
GACTGCCGCTCACCTCGGCCGGACGCTCCTCCACCACGCCATCCTATGCGGCAGCGCTGG
TGCCGTCCAGACCTTGCTGGCGTCCGGTGCAGACTCGGAAGCTCCCGTGAAGACGACCAG
GAGCAACAGGTCCAGGCCGGTTCACCTGGCCGCGCGCCTCGGCCAGCCGGAGATCCTGCG
GATGCTGGCTGACAGGGGCTGCGACCTGAACGCGAGGGCGGAGGCTGGCGACACTGCCGC
CATCATCTGCTCGCGCCACAAACGCGAGGACTGCCTCCGAGTTCTCGTGTCCGCCGGTGC
AGATGTCGCGCTGTTAAACTCGGCTGGCGACTCGTCGGCCTCCGTCGCTTCCTCTGGGGG
ATGGAAGACCGGCTTCGAACGGGCTGTTATTGGCGCGATTCGGTGCGGGGCCGTCCCACG
CTCCAGCGAACGGAGCGTGTTCTCCCCGCTGATGTTCGGCGCGCTGTGCGGCGACGCGAC
CGCGATGGAAGTGCTGCTCTCTCAACCAGACGTGGACGTGGACGAGCAGGATTCGGACGG
ATGCTCGCCCATAATGGCTGCTGCCAAGATGGGAAACGTCGAGGCCTTCCGCGCCCTCGT
ATTCGCCGGCGCCAACGTGAAGCTGAGCAACAAGCGCGGGGAGACGGCCATCGGGCTGGC
GCAGCAGAGCAAGAAGAGAGACCTCTTCGAGCAGGTCATGCTCGAGCTCGCGCTGGAGAA
GGGCATGCCTGGAGGCTTCTACGCGCTTCACTGCGCCTCCCGGCGCGGCGACACCGCGGC
GGTGCGCCACCTCGCCAGCACGGGCTGCGACGTCAATATCCCCGACGGTGACGGCTACAC
CCCGCTGATGCTCGCGGCCAGGGAAGGCCACGCGGGCGTGTGCGAGCTTCTCATCTCCTA
CGGCGCTCGCTGCGACCTCCGGACGCCGCGCGGCGAGACGGCGCTCTCCCTGGCGCGAGC
AGCGCTGGCTACGGCGGCGTTCAACAAGGCCGAAGACGTGATCATGGACGAGATGGGCCG
GCAGGCGGTCCTTCAGGGCGCGCGCGTCAGGAAGCACACCAAGGGCGGACGCGCGAGGCC
TCACGGCAAGTCGCTGCGCATGGTCGCTGCGGCGGGCGTGCTCCGGTGGGGCGGGTCAAG
CCGGCGCAACGTGATCTGCCGGGAGGCCGAGGTCGGTGGCAGCTCGGCGTTCCAGCGGCA
CAGGCAGAGGAAGGGGGACGCGTATGAGCCGGGGCTGTTCCGCGTGGTGACTGCGACAGG
GAGGGAGGTGCACTTCGTGTGCCAGGGCGGTAAGGAGGCCGCGGAGCTGTGGGTGAGGGG
CATCAGGGCCGTCACCAGGGCGGCGTTTGGCAAGAGAGGCAAGGAGTGAGTGACGCATGG
CTGCTCTCTCTCCGTTAGGCTCTGTAGGTTGCAGCGAGCGCGTGCTTGTAAAGAGTTGTA
GCGGGCGTAGAGCCGTAGGGGTGCTATGTGGTTCGGTGTGGGGTGCAGCTGCGCTGGTCT
TCAGCTCGAAGGCTTTGGCTTGCCATGATGGTTTTTGGTTCAGGGGCATGGTGTTGTGTT
GTGTGTATATAGACTGGCTGTTGTCTCATCGAAGTTGCTTTAG