Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003198_T034
CDS Infomation

cds chromosome:B73_RefGen_v4:2:35363304:35387614:-1 gene:Zm00001d003198 gene_biotype:protein_coding transcript_biotype:protein_coding description:eIF-2-alpha kinase GCN2
Sequence

ATGGGGCACAGCTCTAGAAAGAAAAAGAAGCGCGGCGCGGCCGGCCGCAAGGCAGCCAAG
GACCACGCCGCGCAGCTCGAAGGAGACGAGACCGCCCTCGACGAGGAGCTCACGGCCCTG
GCTTCAATTTTAGGGGAGGACTTCAAAGTAACATCAGAATCACCTCATACACGATGTAAT
ATATGTATTAGGCCTTATTCGGATGACATGGGCTTTGAAGATCTAAATATTTCAGCTATT
CTTATTGTGATATGTTTTCCTGGTTACCCCCACAAGTGTCCAAAGTTGCGGATCCTGCCT
GAAAAAAACTTGTCTAAAGAAGATACAGATCGGCTCCTTTCGCTTCTTATTGACCAGGCA
AACATTTATTCCCGAGAAGGACGTGTTATGATTTTCAATTTGTTTGAGGCTGCGCAAGAG
TTTCTATCTGAGATTGCTCCAGCTCGTGTTTCAGTGAGCACTGCTTCTTTCTTGGGTTTG
AGCTCAACTACTGATGACAATGTGGAAGTTGGCTTTGACAGTGATCCTTACCTGGGAATC
TCTTACATATATAACTCCTTCGATCTATATAGTCAGTTATATGATGATACTTATTGGAGT
CGACAAGGTTCAGATCTGACAACAGATAGTGGCAGGAAAAATATTGTATCTCAAGTTCAA
TCCAATGTTAGAAGCAAGAGGAAGACCATCATTGAAAAATCCCACATCTCAGCTGATAAG
GTCAATAATGCTAAAGAGTCATCTGGTGATAAAGCTGAACAGCAACATGCCACAAAGCAT
GGTGCCATACGGGAGGCAGCTCCAACTTTACATGTTGTGGATGAGGAAACTGAAATTTAC
GGCAAAAGTTTGTCTGCTAGCAATACAGGAAATACATCAGATACTCCTGAAAGGGGTTTT
AGCAGTCTAAATGAACCTGAGGACACTGACCTTGCAGATGAATCTTGGAATGAACAAGAT
TGTGATTCGGACTTCAGCTCTTCAAATGCACTACCTTATGTTTCATACATGTTAGATGAT
GCTTCACGAAACAAGAAAAGGGATTTAGTTCTGGTACATCTGCTTCGGATAGCCTGTGCG
TCGAAGGATTCTCTTTCAAGTGCTTTGCCAACAATATCAGCAGAGTTGTGCAACATAGGG
GTTCTTTCCGAATGGGCTAAGGATTTAATTTCTGATTCTCCTGCTGTTTTTGGAGAAACT
TTCAGTCATGTTTTTGGGCAACAAATGATCTCTTCAGAGTGTTCTCTATTTTGGAGACCT
GATAATTCATCATCTAAGCCAAATTCTCGTTATTTGAATGATTTTGAGGAGCTCCGTTCA
CTTGGTCAGGGGGGCTTTGGTCGTGTTGCATTATGCAAAAACAAGCTAGATGGGCGCCAA
TATGCTGTTAAAAAGATACGTCTGAAGGATAGAAGTCCTCAATTGAATGAGAAGATTTTA
AGAGAGGTAGCCACACTTTCAAGATTGCAACATCAACATGTTGTCCGTTATTACCAGGCA
TGGATTGAAACTGAATACGGTCATCATAATATTTTGAATGCTGGCGGGTCCTGCACTGCT
GAGAGCTCTATCTTTAGTTATGATGAAGTCAGCCTATCGGATGCAGGTGGTGGGAATAAG
CAGGAATCCACGTACTTGTACATTCAAATGGAGTATTGTCCTAGGACTTTGCGGCAGGAT
TTTGAGACATACATCTCGTCTTTTGATGTTGACCATGCCTGGCACCTGTTTCGACAAATT
GTGGAAGGTCTAGCTCATGTCCATAGTCAAGGAATCCTACACAGAGACCTGACACCCAGC
AACATATTTTTTGATGTCCGCAATGATATTAAAATTGGAGATTTTGGTTTAGCCAAATTT
CTGAAGCTGGAGCAGCTAGATCATGACCAATATCTTCCTACTGAAGCACTGGGTGTATCA
ATGGATGGAACAGGTCAAGTTGGTACATATTTTTATACTGCACCAGAGGTAGAGCAGAAA
TGGCCACAGATTAATGAAAAGGTTGACATGTACAGTTTGGGAGTAATATTTTTTGAGCTT
TGGCATCCATTTGCCACAGCGATGGAAAGGCATCTTGTTCTTTCCGATCTTAAGCAGAAG
GGAGACCCGCCATTGTCATGGGAATCAAAATTTCCTCGTCAGTCAGTCCTGTTAAGAAGC
TTGCTGTCACCAAGCCCGTCTAACCGTCCATCTGCTGTCGAGGTCTTGCAAAATGAACTG
CCTCCTCGGATGGAAGATGAGTGGCTAAATGATGTACTTAGAATGATACGGACACCAGAA
GACACATATGTTTATGACCGGGTTATATCTACAATATTTAATGAGGACAGGTTCGCCAAA
ATGCAAGGCCAACATGATAGCAGCAAAAAGTCCACTGGTAACATTGATAACAGTGAACTT
TTGGATACCATCGTTGAGGTTGCCAAGGAGGTTTTCAAGCGGCATTGTGCTAAAAGGTTC
CAAATATCACCTTTGCATACTTTGGAGTGGAATTTTACCAAAAACAGGTAA

Peptide Sequence

PEP ID

Zm00001d003198_P034
PEP Infomation

pep chromosome:B73_RefGen_v4:2:35363304:35387614:-1 gene:Zm00001d003198 transcript:Zm00001d003198_T034 gene_biotype:protein_coding transcript_biotype:protein_coding description:eIF-2-alpha kinase GCN2
Sequence

MGHSSRKKKKRGAAGRKAAKDHAAQLEGDETALDEELTALASILGEDFKVTSESPHTRCN
ICIRPYSDDMGFEDLNISAILIVICFPGYPHKCPKLRILPEKNLSKEDTDRLLSLLIDQA
NIYSREGRVMIFNLFEAAQEFLSEIAPARVSVSTASFLGLSSTTDDNVEVGFDSDPYLGI
SYIYNSFDLYSQLYDDTYWSRQGSDLTTDSGRKNIVSQVQSNVRSKRKTIIEKSHISADK
VNNAKESSGDKAEQQHATKHGAIREAAPTLHVVDEETEIYGKSLSASNTGNTSDTPERGF
SSLNEPEDTDLADESWNEQDCDSDFSSSNALPYVSYMLDDASRNKKRDLVLVHLLRIACA
SKDSLSSALPTISAELCNIGVLSEWAKDLISDSPAVFGETFSHVFGQQMISSECSLFWRP
DNSSSKPNSRYLNDFEELRSLGQGGFGRVALCKNKLDGRQYAVKKIRLKDRSPQLNEKIL
REVATLSRLQHQHVVRYYQAWIETEYGHHNILNAGGSCTAESSIFSYDEVSLSDAGGGNK
QESTYLYIQMEYCPRTLRQDFETYISSFDVDHAWHLFRQIVEGLAHVHSQGILHRDLTPS
NIFFDVRNDIKIGDFGLAKFLKLEQLDHDQYLPTEALGVSMDGTGQVGTYFYTAPEVEQK
WPQINEKVDMYSLGVIFFELWHPFATAMERHLVLSDLKQKGDPPLSWESKFPRQSVLLRS
LLSPSPSNRPSAVEVLQNELPPRMEDEWLNDVLRMIRTPEDTYVYDRVISTIFNEDRFAK
MQGQHDSSKKSTGNIDNSELLDTIVEVAKEVFKRHCAKRFQISPLHTLEWNFTKNR

Transcript Sequence

Transcript ID

Zm00001d003198_T034
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:35363304:35387614:-1 gene:Zm00001d003198 gene_biotype:protein_coding transcript_biotype:protein_coding description:eIF-2-alpha kinase GCN2
Sequence

GCGGCTCTGCCCGACGCCATCGCCACGCCAGACGCCAGCGCAGATCTCCCTTCCCGTTTG
TCCTTCCGGCGGGCGAGGGTGACGCCCGCCACACCGCGAGCTCCAGCTGCTCTAATCGAT
GGGGCACAGCTCTAGAAAGAAAAAGAAGCGCGGCGCGGCCGGCCGCAAGGCAGCCAAGGA
CCACGCCGCGCAGCTCGAAGGAGACGAGACCGCCCTCGACGAGGAGCTCACGGCCCTGGC
TTCAATTTTAGGGGAGGACTTCAAAGTAACATCAGAATCACCTCATACACGATGTAATAT
ATGTATTAGGCCTTATTCGGATGACATGGGCTTTGAAGATCTAAATATTTCAGCTATTCT
TATTGTGATATGTTTTCCTGGTTACCCCCACAAGTGTCCAAAGTTGCGGATCCTGCCTGA
AAAAAACTTGTCTAAAGAAGATACAGATCGGCTCCTTTCGCTTCTTATTGACCAGGCAAA
CATTTATTCCCGAGAAGGACGTGTTATGATTTTCAATTTGTTTGAGGCTGCGCAAGAGTT
TCTATCTGAGATTGCTCCAGCTCGTGTTTCAGTGAGCACTGCTTCTTTCTTGGGTTTGAG
CTCAACTACTGATGACAATGTGGAAGTTGGCTTTGACAGTGATCCTTACCTGGGAATCTC
TTACATATATAACTCCTTCGATCTATATAGTCAGTTATATGATGATACTTATTGGAGTCG
ACAAGGTTCAGATCTGACAACAGATAGTGGCAGGAAAAATATTGTATCTCAAGTTCAATC
CAATGTTAGAAGCAAGAGGAAGACCATCATTGAAAAATCCCACATCTCAGCTGATAAGGT
CAATAATGCTAAAGAGTCATCTGGTGATAAAGCTGAACAGCAACATGCCACAAAGCATGG
TGCCATACGGGAGGCAGCTCCAACTTTACATGTTGTGGATGAGGAAACTGAAATTTACGG
CAAAAGTTTGTCTGCTAGCAATACAGGAAATACATCAGATACTCCTGAAAGGGGTTTTAG
CAGTCTAAATGAACCTGAGGACACTGACCTTGCAGATGAATCTTGGAATGAACAAGATTG
TGATTCGGACTTCAGCTCTTCAAATGCACTACCTTATGTTTCATACATGTTAGATGATGC
TTCACGAAACAAGAAAAGGGATTTAGTTCTGGTACATCTGCTTCGGATAGCCTGTGCGTC
GAAGGATTCTCTTTCAAGTGCTTTGCCAACAATATCAGCAGAGTTGTGCAACATAGGGGT
TCTTTCCGAATGGGCTAAGGATTTAATTTCTGATTCTCCTGCTGTTTTTGGAGAAACTTT
CAGTCATGTTTTTGGGCAACAAATGATCTCTTCAGAGTGTTCTCTATTTTGGAGACCTGA
TAATTCATCATCTAAGCCAAATTCTCGTTATTTGAATGATTTTGAGGAGCTCCGTTCACT
TGGTCAGGGGGGCTTTGGTCGTGTTGCATTATGCAAAAACAAGCTAGATGGGCGCCAATA
TGCTGTTAAAAAGATACGTCTGAAGGATAGAAGTCCTCAATTGAATGAGAAGATTTTAAG
AGAGGTAGCCACACTTTCAAGATTGCAACATCAACATGTTGTCCGTTATTACCAGGCATG
GATTGAAACTGAATACGGTCATCATAATATTTTGAATGCTGGCGGGTCCTGCACTGCTGA
GAGCTCTATCTTTAGTTATGATGAAGTCAGCCTATCGGATGCAGGTGGTGGGAATAAGCA
GGAATCCACGTACTTGTACATTCAAATGGAGTATTGTCCTAGGACTTTGCGGCAGGATTT
TGAGACATACATCTCGTCTTTTGATGTTGACCATGCCTGGCACCTGTTTCGACAAATTGT
GGAAGGTCTAGCTCATGTCCATAGTCAAGGAATCCTACACAGAGACCTGACACCCAGCAA
CATATTTTTTGATGTCCGCAATGATATTAAAATTGGAGATTTTGGTTTAGCCAAATTTCT
GAAGCTGGAGCAGCTAGATCATGACCAATATCTTCCTACTGAAGCACTGGGTGTATCAAT
GGATGGAACAGGTCAAGTTGGTACATATTTTTATACTGCACCAGAGGTAGAGCAGAAATG
GCCACAGATTAATGAAAAGGTTGACATGTACAGTTTGGGAGTAATATTTTTTGAGCTTTG
GCATCCATTTGCCACAGCGATGGAAAGGCATCTTGTTCTTTCCGATCTTAAGCAGAAGGG
AGACCCGCCATTGTCATGGGAATCAAAATTTCCTCGTCAGTCAGTCCTGTTAAGAAGCTT
GCTGTCACCAAGCCCGTCTAACCGTCCATCTGCTGTCGAGGTCTTGCAAAATGAACTGCC
TCCTCGGATGGAAGATGAGTGGCTAAATGATGTACTTAGAATGATACGGACACCAGAAGA
CACATATGTTTATGACCGGGTTATATCTACAATATTTAATGAGGACAGGTTCGCCAAAAT
GCAAGGCCAACATGATAGCAGCAAAAAGTCCACTGGTAACATTGATAACAGTGAACTTTT
GGATACCATCGTTGAGGTTGCCAAGGAGGTTTTCAAGCGGCATTGTGCTAAAAGGTTCCA
AATATCACCTTTGCATACTTTGGAGTGGAATTTTACCAAAAACAGGTAAGTTAATGTGTG
ATGTTTTGTTTGTAGTAATATTTGGTGGATGTTTGATGATCCCATAAGATAGAAACCGAC
AAGTGATCCCGATTTTTTTAATAATGCTTTACTCTAAAGTTCAGCGTCGGAGTTACGTTT
GGCCATGCCCCCCCCCCCCCAACGATTCTCTCTGGCTGGCATAGAGGGAGTCTGTGGCCA
CATCCCTCTGTGTATTTGGCCTTCGTGTTTGTGATCTGCAGCCACTGGCCAGCCGGCCAG
GGCCAGACCCACTCCCAACGCAGCAGCCTCCTATTGCTCACAGGCTAAAAGTACCATAAG
TAGCCGATTGAATAATATTTACTTGTCAATCGAGATCATGTGTTACTTTCCTTTAGAGAA
TTTTATTATTTGATTTGATATTTTATTTGCTCTAATCTACAAATTACGTAGTACTTCTAC
ATACTACTATCTGCTAGTTTTGCAAAAAAAAAAATCTCGAACGTGCAGGAGAATTGCGCA
TCGTTCC