Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003123_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:2:32961279:32965721:1 gene:Zm00001d003123 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTTTGTAATTCAGGAGAGCGATGATGTCCATGCTGAACTGGCATCATTCCTTCTTCAG
AACCTTACAAAAGAAGCACAAGAAACTCTCCCGGCATCTTTTGGACTTGCAGAGAGGGTA
CTAGGCCTATGCAGGGACAAGCTCAAACCAGTGTTTCATGAGTTACTTAAGGCCACTCTC
TTGGATGAATACAGCAATGTTGTTACGATGTTGTTCCAAGATGCTTCAGATGCTGGAGAG
AACAATGTCGATGCATCAGGAAAAGACATGGCAGCTGAAGGTAAACTTTCTGAAAAGTCT
GTTTCTGATGAGTCACGACAGGAAACTTCAAAGGTAGACCGAAATGTCAATTGCCTAGGC
CAAGAAGGTACTAGCCCAAGTAGTACTCCAACAACTGCCATTAGCAATGGTGGTGCTCCG
ATTGACAATGTCAAGTCTCCAGATGAACCAGATTCTTCAAAACAGAAGCCAGAACTGACT
TTTCTTGACAAGCAGACCAAAAGTTCTGAGCAATTGGTATCTTGTGATGTAGAAGTACAA
GAACCAGTGACTGTTGGAACTGAAAAGCTATCTGATATCAATTCAAAGAAAGATCACAAG
CTTGGTTCTTCCACCGGATCTGAGATGACTGAACAACCCAAGGTTGTTAAAGACAATGAG
AGTCTAGTAGCATCTGAGTTATCCCCAGAGACAAATGATGGTGATAAAAAGCAGCTAACA
GAGTCTGGCAATATAACTGCTGACGAATCATCAAAACCAATCGATACTAAACCTGCTTCT
GTTAAACCAAAGAGGGGCCGACCTCCAGCAGCAAAGTCTCAGGAGAAAAAGCCTGTTGGA
AAGAAACAGGCATCAAACCTAAAATCTCCAAAACTTGATCCTGTCACTGATTCTGTAGGG
AGAGCTACCAGGCAACTGAATAATGATGTTGCAAAGTCTTCATCAACTAAGGCTGTTGAT
GGAGAATCTGGGAAGAAGCAACATAAAACCAGTATGAAATTTCAGAAAGAAGATGCCGCC
TCTGATAAAGACACCGATGATGATATTAGTTTGAAGGAAATGGTGTCCCCAACAAGGATT
GATAAATCAAAAGGCCAACAAGAAGATAGAGGGACGTCATCAAAAAGGAAACGTCTGCTG
GAAGCTCAAGATACCCCTGTATCGAAGAAAAACAAAATGCTTGACAAAAACCTTATTGGC
TCAAGAATTAAAGTTTGGTGGCCAGATGACAAAATGTTTTATGCGGGTGTTGTTGAATCA
TTCGATGCCTCGTCAAAGAAGCACAAGGTTTCGTATGATGATGGTGATGTTGAGGTACTA
GCTCTTAAGAAGGAAAGATGGGAGTTCATTGCTGAGGAACAAGGCGCTGATCCTGATGTG
GCATCTAATATGCCACGTGGCAGGAAAGCTAAAGGGAGCTCGGTTCAACAAATGGAGGGA
AAAACAGGAACACCTCAAAGTGATGTTAAGAATTCTCCCAAGAAGAGAGGGCGCCCAAAA
GGTGTGCGCTCCAGCAATAATATGCCAAATGCTGATAGCTCTGTGACTCCAGCCAGACTG
AAGGGAAAAAGTGTCGAGAAGGATACTGAAGAGACACCTAAGACTGGCAGTAACTCTAAG
AAGGAAGGTGCAAAACCCTCTCGATCTACTGGAAAGGCTAAGGATTCTGTTGTCAAGGCA
AGCAGCAAGGATGAGGCTGATAGCACCGACAACTCAAAGGATGCTGCTGCCAGTGAAGAC
AAGGATTCAAAAGATGAAGTGAAATCCAGTGAAGCTATCGATGGATCCAAGACAAATGGC
CTTTCAACCAAAAGGAAGCCAGATGAGAATGAAGGTGAGTCATCAGAGGAGGAGAAGGCG
TCTACTAAAACTACTACCAGAAAGAAGCGCAGAAGAAAGAGCCGCAACTAG

Peptide Sequence

PEP ID

Zm00001d003123_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:2:32961279:32965721:1 gene:Zm00001d003123 transcript:Zm00001d003123_T008 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MFVIQESDDVHAELASFLLQNLTKEAQETLPASFGLAERVLGLCRDKLKPVFHELLKATL
LDEYSNVVTMLFQDASDAGENNVDASGKDMAAEGKLSEKSVSDESRQETSKVDRNVNCLG
QEGTSPSSTPTTAISNGGAPIDNVKSPDEPDSSKQKPELTFLDKQTKSSEQLVSCDVEVQ
EPVTVGTEKLSDINSKKDHKLGSSTGSEMTEQPKVVKDNESLVASELSPETNDGDKKQLT
ESGNITADESSKPIDTKPASVKPKRGRPPAAKSQEKKPVGKKQASNLKSPKLDPVTDSVG
RATRQLNNDVAKSSSTKAVDGESGKKQHKTSMKFQKEDAASDKDTDDDISLKEMVSPTRI
DKSKGQQEDRGTSSKRKRLLEAQDTPVSKKNKMLDKNLIGSRIKVWWPDDKMFYAGVVES
FDASSKKHKVSYDDGDVEVLALKKERWEFIAEEQGADPDVASNMPRGRKAKGSSVQQMEG
KTGTPQSDVKNSPKKRGRPKGVRSSNNMPNADSSVTPARLKGKSVEKDTEETPKTGSNSK
KEGAKPSRSTGKAKDSVVKASSKDEADSTDNSKDAAASEDKDSKDEVKSSEAIDGSKTNG
LSTKRKPDENEGESSEEEKASTKTTTRKKRRRKSRN

Transcript Sequence

Transcript ID

Zm00001d003123_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:32961279:32965721:1 gene:Zm00001d003123 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GATGTTTGTAATTCAGGAGAGCGATGATGTCCATGCTGAACTGGCATCATTCCTTCTTCA
GAACCTTACAAAAGAAGCACAAGAAACTCTCCCGGCATCTTTTGGACTTGCAGAGAGGGT
ACTAGGCCTATGCAGGGACAAGCTCAAACCAGTGTTTCATGAGTTACTTAAGGCCACTCT
CTTGGATGAATACAGCAATGTTGTTACGATGTTGTTCCAAGATGCTTCAGATGCTGGAGA
GAACAATGTCGATGCATCAGGAAAAGACATGGCAGCTGAAGGTAAACTTTCTGAAAAGTC
TGTTTCTGATGAGTCACGACAGGAAACTTCAAAGGTAGACCGAAATGTCAATTGCCTAGG
CCAAGAAGGTACTAGCCCAAGTAGTACTCCAACAACTGCCATTAGCAATGGTGGTGCTCC
GATTGACAATGTCAAGTCTCCAGATGAACCAGATTCTTCAAAACAGAAGCCAGAACTGAC
TTTTCTTGACAAGCAGACCAAAAGTTCTGAGCAATTGGTATCTTGTGATGTAGAAGTACA
AGAACCAGTGACTGTTGGAACTGAAAAGCTATCTGATATCAATTCAAAGAAAGATCACAA
GCTTGGTTCTTCCACCGGATCTGAGATGACTGAACAACCCAAGGTTGTTAAAGACAATGA
GAGTCTAGTAGCATCTGAGTTATCCCCAGAGACAAATGATGGTGATAAAAAGCAGCTAAC
AGAGTCTGGCAATATAACTGCTGACGAATCATCAAAACCAATCGATACTAAACCTGCTTC
TGTTAAACCAAAGAGGGGCCGACCTCCAGCAGCAAAGTCTCAGGAGAAAAAGCCTGTTGG
AAAGAAACAGGCATCAAACCTAAAATCTCCAAAACTTGATCCTGTCACTGATTCTGTAGG
GAGAGCTACCAGGCAACTGAATAATGATGTTGCAAAGTCTTCATCAACTAAGGCTGTTGA
TGGAGAATCTGGGAAGAAGCAACATAAAACCAGTATGAAATTTCAGAAAGAAGATGCCGC
CTCTGATAAAGACACCGATGATGATATTAGTTTGAAGGAAATGGTGTCCCCAACAAGGAT
TGATAAATCAAAAGGCCAACAAGAAGATAGAGGGACGTCATCAAAAAGGAAACGTCTGCT
GGAAGCTCAAGATACCCCTGTATCGAAGAAAAACAAAATGCTTGACAAAAACCTTATTGG
CTCAAGAATTAAAGTTTGGTGGCCAGATGACAAAATGTTTTATGCGGGTGTTGTTGAATC
ATTCGATGCCTCGTCAAAGAAGCACAAGGTTTCGTATGATGATGGTGATGTTGAGGTACT
AGCTCTTAAGAAGGAAAGATGGGAGTTCATTGCTGAGGAACAAGGCGCTGATCCTGATGT
GGCATCTAATATGCCACGTGGCAGGAAAGCTAAAGGGAGCTCGGTTCAACAAATGGAGGG
AAAAACAGGAACACCTCAAAGTGATGTTAAGAATTCTCCCAAGAAGAGAGGGCGCCCAAA
AGGTGTGCGCTCCAGCAATAATATGCCAAATGCTGATAGCTCTGTGACTCCAGCCAGACT
GAAGGGAAAAAGTGTCGAGAAGGATACTGAAGAGACACCTAAGACTGGCAGTAACTCTAA
GAAGGAAGGTGCAAAACCCTCTCGATCTACTGGAAAGGCTAAGGATTCTGTTGTCAAGGC
AAGCAGCAAGGATGAGGCTGATAGCACCGACAACTCAAAGGATGCTGCTGCCAGTGAAGA
CAAGGATTCAAAAGATGAAGTGAAATCCAGTGAAGCTATCGATGGATCCAAGACAAATGG
CCTTTCAACCAAAAGGAAGCCAGATGAGAATGAAGGTGAGTCATCAGAGGAGGAGAAGGC
GTCTACTAAAACTACTACCAGAAAGAAGCGCAGAAGAAAGAGCCGCAACTAGTTGCCCAG
AAGCTATGCAGCTCATCATCTAAGTGGCGTTCCGCCCTTGCAGTCTCAAGTCTCAAAGAT
GTTGGCATGAGGCATGCCATGTACTGTACGCTTTATATTCACTGGACCGGTTACCAGCTT
AGCGCTTTGGTAGTTGGCCATTATGAGTCAGCTCGTAGTTATAGCAGTCTT