Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003119_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:2:32817727:32825772:-1 gene:Zm00001d003119 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trafficking protein particle complex II-specific subunit 120 homolog
Sequence

ATGGGCCAAAGTGACCCTATTTTGGAGGATGAAGTCAAATATCGCTATTACACCATTATC
CAGCTATACAGAAGAGCCACTTTACAAGATAATGCTCAAAGAGTTTCACCTGTGAGCTTT
GAGCTTGAAGCTGCCTTGAAGTTGGCAAGATACTTGTGCAGGCGAGAACTTGCCAAGGAG
GTCTCAGATTTGTTAATGGGAGCTGCTGATGGTGCCAAGGCTCTTATTGATGCCAGTGAT
CGGCTCATACTATATATTGAAATTGCAAGACTTTTTGGTACACTTGGTTATAAGCGCAAG
GCGGCCTTTTTTTCAAGACAAGTTGCACAGTTGTACCTTCAGCAAGACAATGCATATGCT
GCTATGAGTGCTATGCAGGTTCTAACTATGACTACAAATGCATACCATGTCCAAAGCCGA
AAGACTATGAAAATGAATCATGATCCGTCCAAGGAACCTCGTGCTGGCAATACTGATTCT
GGAAAGGTGCACCCTCAGTCTATAGTGTCATTGTTTGAGTCACAATGGAGTACCCTTCAA
ATGGTGGTTCTAAGAGAAATATTGATATCGTCGATCCGGGCGGCAGATCCACTCTCATCA
TGGAGCGCTGCAGCTCGTCTTCTTCGATCATTTTACCCACTCATCACACCAGCTGGTCAG
AGTGGCCTAGCAAGCTCACTTGCAAACGCTGCTGACAAGCTTCCAACAGGCACACGCTGT
GCCGATCCATGTCTTCCTTTTATCAGGTTGCATTCTTTCCCGCTTCACCCTTCTCAAAGG
GATATAGTAAAACGGAATCCACATAAAAAGGAGTGGTGGGCTGGTGCAGGTCCTTCAGGA
CCTTTCATTTATACTCCTTTCAGCAAAGCAGGAGCTTCTGGGACTTCCAAGCAAGAGCTT
AGTTGGATTGTGGGGGAGCCGGTTCAAGTCATGGTTGAGTTAGCAAACCCTTGCAGCTTC
GACATAGTTGTGGAGAGCATCTATCTCTCTGTCCATTCTGGGAATTTTGATGCCTTTCCA
GTTAGCGTTAGTCTTCCACCTAACACTTCAAAATTAGTTTTATTATCTGGTATTCCAACA
AAAGTCGGACAAATATCAATTCCTGGGTGCATTGTTCATTGCTTTGGTGTTATTACAGAA
CACCTATTCAAAGAGGTCGATTGTTTGCTCCTTGGAGCTGCACAAGGGCTTGTCCTTTCT
GATCCTTTCAGATGCTGTGGCTCTAGCAAGTTCAAGAGTGTCAACTTTCCTAGCATTTCT
GTTGTTCCTCCTCTGCCATTGTTAATTGCCAATGTTGTGGGTGGAGATGGTTCTATTCTT
CTTTATGAAGGAGAAATTCGTGATGTTCTGATAACACTGACAAATGCCGGAACCGTGCCA
GTTGAAGAAGCAAATGTTGCATTGTCAGGGAAGAATCAGGATTCTGTTATTTCGATTGCT
CATAGCACATGGAAATCTGCGCTCCCTATTAAACCGGGTGGAGAAGTGACATTTGCAGTG
ACTCTAAGAGCCTGGCATCTCAGCTCAGCAGATTTGGAAGCAGATGGCAGTAGATCTCCT
GTAAATTCAAGGAGAATAGCAAGAGAAGGAACCAATCCATTCTTGGATATTCACTATGCT
GGTCCTGCTGCGAATCTTGAGAATGGAGATGTTTCTCTTCTACCTGGAAGACGCCTAGTT
GTTCCCTTGAATATCTGTGTTGTGCAGGGCATGCGTCTTGTAAGAGCACGCCTGTTGTCC
ATGGAAATACCTGCTCGATTTACTGAAACACACTTAAAACCTGTCAGTGGCAAAGACATA
AACTTATTGAAGGTTGATCCCTATAAAGGAAGCTGGGGGCTCCGCCTTCTGGAACTTGAG
CTTTTCAATCCTACTGATGTCGTTTTTTATGTTGATGTTGCTGTGCATTTGGATGACACG
GATGTGGACCAAGAAGTAATTTCAGACGGGGATGCTGCTTGTCACAAAACTAGAATTGAT
CGGGACTACTCTGCCAGAGTTCTCATACCTCTTGAGAACTTCAAATTGCCTGTTCTTGAT
GCTTCCTTCTTTGTAAAGGCAAGTAGTAGTGATGAACCTCTTGGATCCAGGGCCGCCGCC
ATAGCAGAAAGGAATGCCAAGGCAGAGCTAAATGCGTCTATCAACAACTTGATTTCAAAA
ATAAAAGTGAAATGGCACTCTGGGAGAAATAGCTCAGGTGAGCTGAATATTAAAGATGCT
ATCCAGACGGCACTACAAGCATCTATAATGGACATACTGTTGCCAGATCCCCTGATGTTT
AGCTTTAAGCTTGTTACGAATGGAACTGTGGTCAATGTCGATTCTCCAAAGGATTCTGGC
AATGTTCTGAGGTGCAAAGATCCTATATCTGCTCATGAAATGACCCATATGGAAGTTCAG
ATTCGCAACAACACAAAGGAAATTATCCGGATGAACCTTAGCATTTCATGCAAAGATGTT
GCTGGAGAGAATTGCTTCGATGAAAATAGTGCTACTGTCCTCTGGGCTGGTGTTCTTAGC
GATATACACCTGGAAGTTCCACCGTTGCAAGAGGTGGTACATCCTTTCTCCATGTATTTC
CTTGTACCGGGTGACTACTCGCTCCAAGCTGCTTCTGTTATAATCGATGCCACAGACGTT
CTTCGTGCTCGTGCAAAGGCGGAGTCACCAGATGAACCTATACTGTGTCGCGGATCCCCA
TTCCATATCCGGGTAGTCGGTACAGCATAG

Peptide Sequence

PEP ID

Zm00001d003119_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:2:32817727:32825772:-1 gene:Zm00001d003119 transcript:Zm00001d003119_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trafficking protein particle complex II-specific subunit 120 homolog
Sequence

MGQSDPILEDEVKYRYYTIIQLYRRATLQDNAQRVSPVSFELEAALKLARYLCRRELAKE
VSDLLMGAADGAKALIDASDRLILYIEIARLFGTLGYKRKAAFFSRQVAQLYLQQDNAYA
AMSAMQVLTMTTNAYHVQSRKTMKMNHDPSKEPRAGNTDSGKVHPQSIVSLFESQWSTLQ
MVVLREILISSIRAADPLSSWSAAARLLRSFYPLITPAGQSGLASSLANAADKLPTGTRC
ADPCLPFIRLHSFPLHPSQRDIVKRNPHKKEWWAGAGPSGPFIYTPFSKAGASGTSKQEL
SWIVGEPVQVMVELANPCSFDIVVESIYLSVHSGNFDAFPVSVSLPPNTSKLVLLSGIPT
KVGQISIPGCIVHCFGVITEHLFKEVDCLLLGAAQGLVLSDPFRCCGSSKFKSVNFPSIS
VVPPLPLLIANVVGGDGSILLYEGEIRDVLITLTNAGTVPVEEANVALSGKNQDSVISIA
HSTWKSALPIKPGGEVTFAVTLRAWHLSSADLEADGSRSPVNSRRIAREGTNPFLDIHYA
GPAANLENGDVSLLPGRRLVVPLNICVVQGMRLVRARLLSMEIPARFTETHLKPVSGKDI
NLLKVDPYKGSWGLRLLELELFNPTDVVFYVDVAVHLDDTDVDQEVISDGDAACHKTRID
RDYSARVLIPLENFKLPVLDASFFVKASSSDEPLGSRAAAIAERNAKAELNASINNLISK
IKVKWHSGRNSSGELNIKDAIQTALQASIMDILLPDPLMFSFKLVTNGTVVNVDSPKDSG
NVLRCKDPISAHEMTHMEVQIRNNTKEIIRMNLSISCKDVAGENCFDENSATVLWAGVLS
DIHLEVPPLQEVVHPFSMYFLVPGDYSLQAASVIIDATDVLRARAKAESPDEPILCRGSP
FHIRVVGTA

Transcript Sequence

Transcript ID

Zm00001d003119_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:32817727:32825772:-1 gene:Zm00001d003119 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trafficking protein particle complex II-specific subunit 120 homolog
Sequence

AGATCTGCCTTTCCCGACCCGGAGCCAGCCAGGTGAGCCGAGGCAGGGGGGACGCGCCAC
TGGCCATGGAGCCCGGGTTGAGCATCGAGTCCGGTTCTGCCATCCGCGTCGCGGTGCTCC
CCGTGGGCGGCCCGATTCCGCCGCCGCGCCTGCGCGAGTACGCGGCCCTGGTGGCGCGCC
ACGCGCGCGTCGACCTCGCCTCGCTCCGCACCTACTACGCGGAGCACCAGAAGAGCCCCT
TCCAGCACCAGCCCTGGGAGACCGGATGCCTCCGCCTCAAGTTCGTGCTCGGCGGCTGCG
TGCCTTCACCCTGGGAGGACTTCCAGTCCTCGCGCAAGGTGCTCGCCGTGATCGGCATCT
GTCACCTGCCGTCCTCGCCCGACCTCGACCACGTGGCGGCAGACTTCATAGACGCTGCGC
GGTCGTACCCGTCGGCGCTCGCCAACCGCTGCTTCGCCTTCTGCCCCACGGACGCACAGC
TGTCAGCGAAGAAGAGGGACGATATTATTATGTTCCCTCCTTCTGATCAGCAATCGCTGG
AACTTCATATGCTTACAATGATCCAAGATCTCGCTGCTTCTTTGTTGATGGAGTTTGAGA
AGTGGGTCTTGCGTGCAGAATCCACAGGAACCATTTTGAAGACCCCTTTGGATTCACAAT
CCAGTCTTGGCTCAGAGGAGGTTCATAGGTAATTAAGGCTAAAAAAAGAAGGCTTGGTCG
TGCACAGAAGATAATAGGAGATTATTGCCTCTTGGCTGGATCACCTGTGGATGCTAATGC
ACATTACACCACCGCTATAGAGCTTGCAAGATTGACCGGTGATGTTTTCTGGCATGCTGG
AGCCCTTGAGGGTAGTGTCTGCGCATTAGTGGTGGATAGGATGGGCCAAAGTGACCCTAT
TTTGGAGGATGAAGTCAAATATCGCTATTACACCATTATCCAGCTATACAGAAGAGCCAC
TTTACAAGATAATGCTCAAAGAGTTTCACCTGTGAGCTTTGAGCTTGAAGCTGCCTTGAA
GTTGGCAAGATACTTGTGCAGGCGAGAACTTGCCAAGGAGGTCTCAGATTTGTTAATGGG
AGCTGCTGATGGTGCCAAGGCTCTTATTGATGCCAGTGATCGGCTCATACTATATATTGA
AATTGCAAGACTTTTTGGTACACTTGGTTATAAGCGCAAGGCGGCCTTTTTTTCAAGACA
AGTTGCACAGTTGTACCTTCAGCAAGACAATGCATATGCTGCTATGAGTGCTATGCAGGT
TCTAACTATGACTACAAATGCATACCATGTCCAAAGCCGAAAGACTATGAAAATGAATCA
TGATCCGTCCAAGGAACCTCGTGCTGGCAATACTGATTCTGGAAAGGTGCACCCTCAGTC
TATAGTGTCATTGTTTGAGTCACAATGGAGTACCCTTCAAATGGTGGTTCTAAGAGAAAT
ATTGATATCGTCGATCCGGGCGGCAGATCCACTCTCATCATGGAGCGCTGCAGCTCGTCT
TCTTCGATCATTTTACCCACTCATCACACCAGCTGGTCAGAGTGGCCTAGCAAGCTCACT
TGCAAACGCTGCTGACAAGCTTCCAACAGGCACACGCTGTGCCGATCCATGTCTTCCTTT
TATCAGGTTGCATTCTTTCCCGCTTCACCCTTCTCAAAGGGATATAGTAAAACGGAATCC
ACATAAAAAGGAGTGGTGGGCTGGTGCAGGTCCTTCAGGACCTTTCATTTATACTCCTTT
CAGCAAAGCAGGAGCTTCTGGGACTTCCAAGCAAGAGCTTAGTTGGATTGTGGGGGAGCC
GGTTCAAGTCATGGTTGAGTTAGCAAACCCTTGCAGCTTCGACATAGTTGTGGAGAGCAT
CTATCTCTCTGTCCATTCTGGGAATTTTGATGCCTTTCCAGTTAGCGTTAGTCTTCCACC
TAACACTTCAAAATTAGTTTTATTATCTGGTATTCCAACAAAAGTCGGACAAATATCAAT
TCCTGGGTGCATTGTTCATTGCTTTGGTGTTATTACAGAACACCTATTCAAAGAGGTCGA
TTGTTTGCTCCTTGGAGCTGCACAAGGGCTTGTCCTTTCTGATCCTTTCAGATGCTGTGG
CTCTAGCAAGTTCAAGAGTGTCAACTTTCCTAGCATTTCTGTTGTTCCTCCTCTGCCATT
GTTAATTGCCAATGTTGTGGGTGGAGATGGTTCTATTCTTCTTTATGAAGGAGAAATTCG
TGATGTTCTGATAACACTGACAAATGCCGGAACCGTGCCAGTTGAAGAAGCAAATGTTGC
ATTGTCAGGGAAGAATCAGGATTCTGTTATTTCGATTGCTCATAGCACATGGAAATCTGC
GCTCCCTATTAAACCGGGTGGAGAAGTGACATTTGCAGTGACTCTAAGAGCCTGGCATCT
CAGCTCAGCAGATTTGGAAGCAGATGGCAGTAGATCTCCTGTAAATTCAAGGAGAATAGC
AAGAGAAGGAACCAATCCATTCTTGGATATTCACTATGCTGGTCCTGCTGCGAATCTTGA
GAATGGAGATGTTTCTCTTCTACCTGGAAGACGCCTAGTTGTTCCCTTGAATATCTGTGT
TGTGCAGGGCATGCGTCTTGTAAGAGCACGCCTGTTGTCCATGGAAATACCTGCTCGATT
TACTGAAACACACTTAAAACCTGTCAGTGGCAAAGACATAAACTTATTGAAGGTTGATCC
CTATAAAGGAAGCTGGGGGCTCCGCCTTCTGGAACTTGAGCTTTTCAATCCTACTGATGT
CGTTTTTTATGTTGATGTTGCTGTGCATTTGGATGACACGGATGTGGACCAAGAAGTAAT
TTCAGACGGGGATGCTGCTTGTCACAAAACTAGAATTGATCGGGACTACTCTGCCAGAGT
TCTCATACCTCTTGAGAACTTCAAATTGCCTGTTCTTGATGCTTCCTTCTTTGTAAAGGC
AAGTAGTAGTGATGAACCTCTTGGATCCAGGGCCGCCGCCATAGCAGAAAGGAATGCCAA
GGCAGAGCTAAATGCGTCTATCAACAACTTGATTTCAAAAATAAAAGTGAAATGGCACTC
TGGGAGAAATAGCTCAGGTGAGCTGAATATTAAAGATGCTATCCAGACGGCACTACAAGC
ATCTATAATGGACATACTGTTGCCAGATCCCCTGATGTTTAGCTTTAAGCTTGTTACGAA
TGGAACTGTGGTCAATGTCGATTCTCCAAAGGATTCTGGCAATGTTCTGAGGTGCAAAGA
TCCTATATCTGCTCATGAAATGACCCATATGGAAGTTCAGATTCGCAACAACACAAAGGA
AATTATCCGGATGAACCTTAGCATTTCATGCAAAGATGTTGCTGGAGAGAATTGCTTCGA
TGAAAATAGTGCTACTGTCCTCTGGGCTGGTGTTCTTAGCGATATACACCTGGAAGTTCC
ACCGTTGCAAGAGGTGGTACATCCTTTCTCCATGTATTTCCTTGTACCGGGTGACTACTC
GCTCCAAGCTGCTTCTGTTATAATCGATGCCACAGACGTTCTTCGTGCTCGTGCAAAGGC
GGAGTCACCAGATGAACCTATACTGTGTCGCGGATCCCCATTCCATATCCGGGTAGTCGG
TACAGCATAGGCAGTTCTTCTGAGTTACTCCTAGTCTAGAGGCCTCATTTTACTGTGACA
ATTGTAGGTGTGGAAAATCTTGTACAAGAGTGATCCCTGGCGCCCTGCCCCTCATGCGAT
ATGTTTTTTGTCCTTTTTGTTGGCTTCTTTGTAAGTCATGTCATGTACAGTGTACAAGCA
TAGTGAGTATTGTTTCAAGCACAGAAATTGTATGTCGATGATTC