Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003106_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:2:32427122:32432353:1 gene:Zm00001d003106 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylate-binding protein 2

Sequence

ATGGCAGCGCAAGTGGCGGCGGTGGTGGTGCCGAATGTGGTGTCGCCGGGAGCGGTCGGC
GTCGGACTCGGCGTGGCGCAGCCGCTCCCGACCACGTCGCTCTACGTCGGCGACCTGGAG
GGGTCCGTCTCGGACTCGCAGCTGTACGAGCTCTTCAGCCAGGCGGGGCAGGTGGTGTCG
GTGCGCGTCTGCAGGGACGTCACCTCGCGCCGCTCGCTCGGATACGCCTACGTCAACTTC
AACAACCCCTTGGATGCTGCAAGGGCATTGGAAGTGCTGAACTTTGCTCCTCTTAACAAC
AAACCTATCCGGGTGATGTATTCAAACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCT
AACATTTTCATAAAGAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTT
TCTTCATTTGGTACCATTCTCTCATGTAAGGTAGCCATGGATGAAGGAGGCCAATCCAAA
GGCTTTGGTTTTGTTCAGTATGAAAAAGAAGAAGCAGCACAGAACGCTATAAAAAGTCTT
AACGGAATGCTTATAAATGATAAACCTGTTTTTGTTGGACCTTTTCTTCGCAAGCAAGAA
AGGGATCACTCTTTTGACAAGACAAAATTTAACAATGTCTTCGTGAAAAACTTGTCTGAG
TCTACCACAAAAGAAGATTTACTCAAAATCTTTGGTGAATATGGGAATATTACAAGTGCT
GTTGTGATGATTGGCATGGATGGTAAATCAAGGTGCTTTGGTTTCATCAATTTTGAGAAT
CCAGATGCAGCTTCCCGTGCTGTTCAGGAACTTAATGGTAAGAAGATAAATGACAAAGAG
TGGTATGTTGGAAGAGCTCAGAAGAAGTCAGAAAGAGAGATGGAACTAAAAAGGAGATTT
GAGCAGATCTTGAAAGATGCTGCTGACAAATATCAAGGACTGAACTTATATCTCAAGAAC
TTGGATGATAGCATTGGAGATGATCAACTTCGTGAATTGTTCTCAAATTTTGGCAAAATT
ACTTCATGCAAGGTGATGCGTGATCAAAATGGTCTTAGCAAAGGCTCTGGATTTGTTGCT
TTCTCAACTCGTGAGGAAGCATCTCAGGCTTTAACTGAAATGAATGGCAAAATGATATCT
GGAAAACCATTGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG
GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCCCGCGCCTT
CCAATGTACCCTCCTATGGCTCCTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATG
ATACCCCCTCAGCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGG
GGTCCTCATATGCCAAATTATTTTGTTCCAGTTGTCCAACACCAACAGGGCCAACAGGGT
CCACGCCCAGGTATTAGGCGTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTT
CAGCAGCAGATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
GAAGCTCCGGCGATGCCAGGGGTTGCTGGAGGTATGATGCAGGCATACGATATGGGCGGC
TTCCCTGTGAGGGATGCTGCCTTATCCCCGGCTGCCCAAATTGGGACTCTGACTTCTGCC
CTTGCAAATGCTAATCCTGAACAGCAAAGAACGATCCTTGGTGAAAACCTATACCCACTG
GTTGAGCAACTGGAACCAAACCAAGCGGCAAAGGTCACTGGAATGCTTTTGGAGATGGAT
CAGACTGAGGTCCTCCACCTGCTTGAGTCCCCTGATGCCCTCAAGTCAAAGGTTGCTGAG
GCGATGGATGTTCTCCACAATGTGGCCCATCAGCAAAACGCAAACACCCCGACCAGTCAG
CTTGCTGCATTATCACTAACCGAAGGCATTATCTCCTAA

Peptide Sequence

PEP ID

Zm00001d003106_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:2:32427122:32432353:1 gene:Zm00001d003106 transcript:Zm00001d003106_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylate-binding protein 2

Sequence

MAAQVAAVVVPNVVSPGAVGVGLGVAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVS
VRVCRDVTSRRSLGYAYVNFNNPLDAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSA
NIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSL
NGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSA
VVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRF
EQILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVA
FSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRL
PMYPPMAPQQLFYGQAPPAMIPPQPGFGFQQQLVPGMRPGGPHMPNYFVPVVQHQQGQQG
PRPGIRRGAGAQGQQPVPPFQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMMQAYDMGG
FPVRDAALSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMD
QTEVLHLLESPDALKSKVAEAMDVLHNVAHQQNANTPTSQLAALSLTEGIIS

Transcript Sequence

Transcript ID

Zm00001d003106_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:32427122:32432353:1 gene:Zm00001d003106 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylate-binding protein 2

Sequence

CTCTCGTTGAGAGAGTCGTCCCCTCCGCGTGCTCTCCGCCTGCGGCATCTGTATCCCACA
ACGAAAAACTACCAAAAAAATTAGAAATCCCCAAATCCGCGAGATCTATCAGTATCGAGC
GATTTACCGATCCGATTGCTAGGGTTTAGTTTCGAAAAAGAAACTCTGAAAAAAAATTCT
GGTCGAGGGGAGGAGACGATGGCAGCGCAAGTGGCGGCGGTGGTGGTGCCGAATGTGGTG
TCGCCGGGAGCGGTCGGCGTCGGACTCGGCGTGGCGCAGCCGCTCCCGACCACGTCGCTC
TACGTCGGCGACCTGGAGGGGTCCGTCTCGGACTCGCAGCTGTACGAGCTCTTCAGCCAG
GCGGGGCAGGTGGTGTCGGTGCGCGTCTGCAGGGACGTCACCTCGCGCCGCTCGCTCGGA
TACGCCTACGTCAACTTCAACAACCCCTTGGATGCTGCAAGGGCATTGGAAGTGCTGAAC
TTTGCTCCTCTTAACAACAAACCTATCCGGGTGATGTATTCAAACCGTGATCCAAGTAGC
CGCAGGAGTGGATCTGCTAACATTTTCATAAAGAATCTTGACAAGATGATAGACAATAAA
TCCCTTCATGAGACCTTTTCTTCATTTGGTACCATTCTCTCATGTAAGGTAGCCATGGAT
GAAGGAGGCCAATCCAAAGGCTTTGGTTTTGTTCAGTATGAAAAAGAAGAAGCAGCACAG
AACGCTATAAAAAGTCTTAACGGAATGCTTATAAATGATAAACCTGTTTTTGTTGGACCT
TTTCTTCGCAAGCAAGAAAGGGATCACTCTTTTGACAAGACAAAATTTAACAATGTCTTC
GTGAAAAACTTGTCTGAGTCTACCACAAAAGAAGATTTACTCAAAATCTTTGGTGAATAT
GGGAATATTACAAGTGCTGTTGTGATGATTGGCATGGATGGTAAATCAAGGTGCTTTGGT
TTCATCAATTTTGAGAATCCAGATGCAGCTTCCCGTGCTGTTCAGGAACTTAATGGTAAG
AAGATAAATGACAAAGAGTGGTATGTTGGAAGAGCTCAGAAGAAGTCAGAAAGAGAGATG
GAACTAAAAAGGAGATTTGAGCAGATCTTGAAAGATGCTGCTGACAAATATCAAGGACTG
AACTTATATCTCAAGAACTTGGATGATAGCATTGGAGATGATCAACTTCGTGAATTGTTC
TCAAATTTTGGCAAAATTACTTCATGCAAGGTGATGCGTGATCAAAATGGTCTTAGCAAA
GGCTCTGGATTTGTTGCTTTCTCAACTCGTGAGGAAGCATCTCAGGCTTTAACTGAAATG
AATGGCAAAATGATATCTGGAAAACCATTGTATGTTGCATTTGCGCAGCGCAAAGAAGAT
AGAAAAGCGATGTTGCAGGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCC
ACTCTAGCCCCGCGCCTTCCAATGTACCCTCCTATGGCTCCTCAGCAACTCTTCTATGGA
CAAGCGCCACCTGCTATGATACCCCCTCAGCCAGGATTTGGTTTCCAGCAACAACTTGTT
CCAGGCATGAGGCCTGGGGGTCCTCATATGCCAAATTATTTTGTTCCAGTTGTCCAACAC
CAACAGGGCCAACAGGGTCCACGCCCAGGTATTAGGCGTGGAGCTGGAGCCCAGGGTCAG
CAACCTGTGCCACCATTTCAGCAGCAGATTGTTCCAAGAGGACGGATGTACCGTTACCCA
ACTGGTCGCAACATGCCTGAAGCTCCGGCGATGCCAGGGGTTGCTGGAGGTATGATGCAG
GCATACGATATGGGCGGCTTCCCTGTGAGGGATGCTGCCTTATCCCCGGCTGCCCAAATT
GGGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGATCCTTGGT
GAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAGCGGCAAAGGTCACTGGA
ATGCTTTTGGAGATGGATCAGACTGAGGTCCTCCACCTGCTTGAGTCCCCTGATGCCCTC
AAGTCAAAGGTTGCTGAGGCGATGGATGTTCTCCACAATGTGGCCCATCAGCAAAACGCA
AACACCCCGACCAGTCAGCTTGCTGCATTATCACTAACCGAAGGCATTATCTCCTAACTT
GAAAGCCATAACAAACTATCTTCAGTTTGCAATTGAGTGATGTTTCCAGAGGTTATCTGG
CACATGACAGTATTGCTCCTTTTTTTTCTTCTATGGTTGGACTTGAGTGCTGTTTTCGTA
TTTG