Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003087_T040
CDS Infomation

cds chromosome:B73_RefGen_v4:2:31809098:31819663:1 gene:Zm00001d003087 gene_biotype:protein_coding transcript_biotype:protein_coding description:CLIP-associated protein
Sequence

ATGACAACACACTTGCCCACCAAAGAAAGATCAAGGTCACCATACTTGAGTAATATGTCA
TCTGAGTCCATGTCTGGCTTATCACTGCCTTACTCAAGAAGATCTTCGGAGAGGCTTCAA
GAAGGAGGCCGCATGGATGAGAGCTATGATATCCGTTCAACTAGGCGAATGCCTCAAATG
CACTTCGACAGAAACTATGTTGATATGCCTTACAGGGATGCCAGCCACAGAGATTCACAT
AACAACAATGTCCCAAATTTTCAGAGACCTCTTCTAAGGAAACAAGTAATGTCAAGGGCT
TCTGCAAGTGGCAGACACAGCTTTGATGATAGTCATGTACCATCAGGTGACGTGCCTAGC
TATACAGATTCTCTGGCTTCTCTAAATGATGCACTTTCTGAGGGTCTCAGCCCTAGTTCT
GACTGGGTAGCAAGAGTTTCAGCTTTCGAGTTTATTAGAAATTTATTGAAACAAGGCCAG
AAAGGCATTCAAGAAATTACTCAGAATTTTGAGAAGGTTATGAAGCTGTTTTTCCGTCAT
TTGGATGATCCTCACCATAAGGTTGCACAGGCAGCTTTCTCTACACTTGCAGAGATTATC
CCAGCTTCCAAGAAGCCATTTGAAAGTTATGTAGAGCGAATTCTACCTTATGTATTTTCA
CGGCTTATTGATCCAAAAGAGTTGGTGAAAAAACCATGCTCCATAACATTGGAGGTTGTT
GGTCGAACATATGCTATTGATATGTTACTACCTGCACTAGTACGCTCATTAGATGAACAG
AGATCTCCAAAGGCAAAATTGGCCGTTCTTGAGTTTGCAAATAAATCATTCAGCAAGTAC
ACTGTGGACTCTGATGGTTATAGTAACAGTGGCTTCCTTAAACTATGGCTTTCAAAATTG
GCACCTTTGGTAAATGAAAAGAATGCAAAATTAAAGGAGGCATCTATTTCTGGTATCATA
TCCGTTTATTCTCATTTTGATTCAACAGCAGTGCTAAATTTTATTCTCAGTTTGTCAGTT
GAAGATCAAAACCTCTTGAGGAGAGCTCTGAAGATCAAAACCCCTCGTATCGAGGTTGAT
CTGGTGAACTACTTGCAGAGCAAGAAAGAACGTCCACGCCCCAAATCTTATGACCAGGTG
GATTTTGGAACTTCGGAGGATGGCTATGCACTGACATCCAAGAAGAGCTATCCATTTGGA
CGGTTTTCTTCTAGTTCCCTTGATGCTGAAGGGGGAAAGATGATCAGTTCGATGCACGAA
CCAGTGCTGCATAATGTTTCTATAGGTCGAACAACTTCTGATATGAGCATGGATCATGCT
ATTCAAAGTTTGGAGTCATCTACAGGAGCTGAAGTTCATTTAACTAGGAGTAGGGAACCA
AAGAATAACATTAACTCAGTTGTGGAAGCTGCTCGCTCTTGGACAAACTACACTGAAAAA
ACTGATGCCTCTTTAGATGGTGAAACTGCTACCAGTACTCCTCGGTTAGATGTCAGCCGG
TTTGTAACTTCTGATGGGCATAATACTGTTGGCTCAACCACTGAAGAAAGTGTTCAAGAG
GGTGATATGATTGTGAATCTTAGTTCTATAAAGACCAGCCTTCAAATGGACAACGGTCTG
AGCGTACCACAACTTCTCTATCAGATAAGCAATGACACTGAAGTTTCAAGCTCAGAAAAG
CGGGAAGCACTACAACAATTGGTCGATGCTTCCCTCGATAACAACAGCTCCATTTGGGCA
AAGTACTTCAATCAAATCTTAAAGGTTGTGCTTGAAGTATTAGATGACTCTGATTCATCC
ATGAGGGAGCTTGCTTTATCTTTGATTACTGAGATGCTCAACTACCAGAAAGATGCAATT
GAAGACTCTATGGAGATTGTTTTTGAAAAACTCCTGCATGTGACCAAAGATGCTGTGGCC
AAGATTTCAAATGAGGCAAACCAATGCTTAAATGTTCTATTGGCAAAATACAACCCTTTC
ACATGTCTTGCTATTACTGTACCTTTATTGGTCAGTGATGATGAGAAGATGCTTGTTGTG
TGTATCAACTGCTTGACAAAGCTTGTTGGACGCCTTTCTCAAGAGGAATTGATTGTTCAA
TTGCCTACATTTCTGCCAGCATTATTTGATGCTTTTAACAACCAAAGTCCAGATGTCCGA
AAGGTCAGTACCATCATATTTTCCTTGCTTTGCATTATTCTTTTTTTTTACTCTAGACTG
TTGTGTTCTGTCTGGTGGATATCTACATCATGCTTGGGAAAGCATTTGCTCCATACTTGG
AAGGGCTTAGCAGCACGCAGCTCCGCCTAG

Peptide Sequence

PEP ID

Zm00001d003087_P040
PEP Infomation

pep chromosome:B73_RefGen_v4:2:31809098:31819663:1 gene:Zm00001d003087 transcript:Zm00001d003087_T040 gene_biotype:protein_coding transcript_biotype:protein_coding description:CLIP-associated protein
Sequence

MTTHLPTKERSRSPYLSNMSSESMSGLSLPYSRRSSERLQEGGRMDESYDIRSTRRMPQM
HFDRNYVDMPYRDASHRDSHNNNVPNFQRPLLRKQVMSRASASGRHSFDDSHVPSGDVPS
YTDSLASLNDALSEGLSPSSDWVARVSAFEFIRNLLKQGQKGIQEITQNFEKVMKLFFRH
LDDPHHKVAQAAFSTLAEIIPASKKPFESYVERILPYVFSRLIDPKELVKKPCSITLEVV
GRTYAIDMLLPALVRSLDEQRSPKAKLAVLEFANKSFSKYTVDSDGYSNSGFLKLWLSKL
APLVNEKNAKLKEASISGIISVYSHFDSTAVLNFILSLSVEDQNLLRRALKIKTPRIEVD
LVNYLQSKKERPRPKSYDQVDFGTSEDGYALTSKKSYPFGRFSSSSLDAEGGKMISSMHE
PVLHNVSIGRTTSDMSMDHAIQSLESSTGAEVHLTRSREPKNNINSVVEAARSWTNYTEK
TDASLDGETATSTPRLDVSRFVTSDGHNTVGSTTEESVQEGDMIVNLSSIKTSLQMDNGL
SVPQLLYQISNDTEVSSSEKREALQQLVDASLDNNSSIWAKYFNQILKVVLEVLDDSDSS
MRELALSLITEMLNYQKDAIEDSMEIVFEKLLHVTKDAVAKISNEANQCLNVLLAKYNPF
TCLAITVPLLVSDDEKMLVVCINCLTKLVGRLSQEELIVQLPTFLPALFDAFNNQSPDVR
KVSTIIFSLLCIILFFYSRLLCSVWWISTSCLGKHLLHTWKGLAARSSA

Transcript Sequence

Transcript ID

Zm00001d003087_T040
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:31809098:31819663:1 gene:Zm00001d003087 gene_biotype:protein_coding transcript_biotype:protein_coding description:CLIP-associated protein
Sequence

GGAGTTGATCCTCCATCATCTCGTGATCCTCCTGTGCTGCTTGCAGCACCAGCATCAAAT
GTTCTATCATTGCAGAACTCAGCACTGTTGGACTCATCCCTTCCTACCATCCCACCTAGT
TCGCGAAATGGAGGTTCCCGCTTATTGGAAACGATGACAACACACTTGCCCACCAAAGAA
AGATCAAGGTCACCATACTTGAGTAATATGTCATCTGAGTCCATGTCTGGCTTATCACTG
CCTTACTCAAGAAGATCTTCGGAGAGGCTTCAAGAAGGAGGCCGCATGGATGAGAGCTAT
GATATCCGTTCAACTAGGCGAATGCCTCAAATGCACTTCGACAGAAACTATGTTGATATG
CCTTACAGGGATGCCAGCCACAGAGATTCACATAACAACAATGTCCCAAATTTTCAGAGA
CCTCTTCTAAGGAAACAAGTAATGTCAAGGGCTTCTGCAAGTGGCAGACACAGCTTTGAT
GATAGTCATGTACCATCAGGTGACGTGCCTAGCTATACAGATTCTCTGGCTTCTCTAAAT
GATGCACTTTCTGAGGGTCTCAGCCCTAGTTCTGACTGGGTAGCAAGAGTTTCAGCTTTC
GAGTTTATTAGAAATTTATTGAAACAAGGCCAGAAAGGCATTCAAGAAATTACTCAGAAT
TTTGAGAAGGTTATGAAGCTGTTTTTCCGTCATTTGGATGATCCTCACCATAAGGTTGCA
CAGGCAGCTTTCTCTACACTTGCAGAGATTATCCCAGCTTCCAAGAAGCCATTTGAAAGT
TATGTAGAGCGAATTCTACCTTATGTATTTTCACGGCTTATTGATCCAAAAGAGTTGGTG
AAAAAACCATGCTCCATAACATTGGAGGTTGTTGGTCGAACATATGCTATTGATATGTTA
CTACCTGCACTAGTACGCTCATTAGATGAACAGAGATCTCCAAAGGCAAAATTGGCCGTT
CTTGAGTTTGCAAATAAATCATTCAGCAAGTACACTGTGGACTCTGATGGTTATAGTAAC
AGTGGCTTCCTTAAACTATGGCTTTCAAAATTGGCACCTTTGGTAAATGAAAAGAATGCA
AAATTAAAGGAGGCATCTATTTCTGGTATCATATCCGTTTATTCTCATTTTGATTCAACA
GCAGTGCTAAATTTTATTCTCAGTTTGTCAGTTGAAGATCAAAACCTCTTGAGGAGAGCT
CTGAAGATCAAAACCCCTCGTATCGAGGTTGATCTGGTGAACTACTTGCAGAGCAAGAAA
GAACGTCCACGCCCCAAATCTTATGACCAGGTGGATTTTGGAACTTCGGAGGATGGCTAT
GCACTGACATCCAAGAAGAGCTATCCATTTGGACGGTTTTCTTCTAGTTCCCTTGATGCT
GAAGGGGGAAAGATGATCAGTTCGATGCACGAACCAGTGCTGCATAATGTTTCTATAGGT
CGAACAACTTCTGATATGAGCATGGATCATGCTATTCAAAGTTTGGAGTCATCTACAGGA
GCTGAAGTTCATTTAACTAGGAGTAGGGAACCAAAGAATAACATTAACTCAGTTGTGGAA
GCTGCTCGCTCTTGGACAAACTACACTGAAAAAACTGATGCCTCTTTAGATGGTGAAACT
GCTACCAGTACTCCTCGGTTAGATGTCAGCCGGTTTGTAACTTCTGATGGGCATAATACT
GTTGGCTCAACCACTGAAGAAAGTGTTCAAGAGGGTGATATGATTGTGAATCTTAGTTCT
ATAAAGACCAGCCTTCAAATGGACAACGGTCTGAGCGTACCACAACTTCTCTATCAGATA
AGCAATGACACTGAAGTTTCAAGCTCAGAAAAGCGGGAAGCACTACAACAATTGGTCGAT
GCTTCCCTCGATAACAACAGCTCCATTTGGGCAAAGTACTTCAATCAAATCTTAAAGGTT
GTGCTTGAAGTATTAGATGACTCTGATTCATCCATGAGGGAGCTTGCTTTATCTTTGATT
ACTGAGATGCTCAACTACCAGAAAGATGCAATTGAAGACTCTATGGAGATTGTTTTTGAA
AAACTCCTGCATGTGACCAAAGATGCTGTGGCCAAGATTTCAAATGAGGCAAACCAATGC
TTAAATGTTCTATTGGCAAAATACAACCCTTTCACATGTCTTGCTATTACTGTACCTTTA
TTGGTCAGTGATGATGAGAAGATGCTTGTTGTGTGTATCAACTGCTTGACAAAGCTTGTT
GGACGCCTTTCTCAAGAGGAATTGATTGTTCAATTGCCTACATTTCTGCCAGCATTATTT
GATGCTTTTAACAACCAAAGTCCAGATGTCCGAAAGGTCAGTACCATCATATTTTCCTTG
CTTTGCATTATTCTTTTTTTTTACTCTAGACTGTTGTGTTCTGTCTGGTGGATATCTACA
TCATGCTTGGGAAAGCATTTGCTCCATACTTGGAAGGGCTTAGCAGCACGCAGCTCCGCC
TAGTAACCATCTACGCTAACCGGATTTCACAGGCGAGGTCCGGCAAGCCAATCGATTCTA
ACCAATGAGGTTGTAACATTGTTATTATTTGTGGTCTATATGAGCATTTCTCCGGTAGGG
TGGTTTTCTTGTCATTTGTTTGTGTATGTGTATAGTATAAACAAGCGCCTCCCATCTGTT
AAGAGCTCCTGGTTTTTG