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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d003057_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:30670978:30671580:1 gene:Zm00001d003057 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Sequence

ATGGACATGTCGCCGAACCCCGACAGCCCCTCGTCAGGAGGGGGCAACGGCATCGGGCCG
AGCAGCGGAGGCGCATCGCCGTCGGTTGGTTCCATGACGCCGCAGTCGCCGAGCCGGTAC
GAGGCGCAGAAGCGGCGCGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCG
CCGCTGAGCCTGGCGCAGTGCAGCGGGGCTCACGTCCTGGAGTTCCTCCGCTACCTGGAC
CAGTTCGGCAAGACCAAGGTGCACGGCCCGGCGTGCCCCTTCTTCGGCCATCCGAACCCG
CCGGCGCCGTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCAGCCTGGACGCCCTGGTGGGC
CGCCTCCGCGCCGCCTTCGAGGAGAACGGGGGCCGCCCGGAGTCCAACCCCTTCGCGGCG
CGCGCCGTGCGCCTCTACCTCCGCGAGGTCCGCGAGCACCAGGCCCGCGCCCGCGGCGTC
AGCTACGAGAAGAAGAAGCGCAAGAAGCCGCAGCAGCTGCAGGGCGACAGCAGCGGCGGC
CTTCACGGCCACGCGCACCAGCCGCCGCCGCCGCCCCCGCCGCCCGCCGGCGCCGCCTGC
TGA

Peptide Sequence

PEP ID

Zm00001d003057_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:30670978:30671580:1 gene:Zm00001d003057 transcript:Zm00001d003057_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Sequence

MDMSPNPDSPSSGGGNGIGPSSGGASPSVGSMTPQSPSRYEAQKRRDWNTFGQYLRNHRP
PLSLAQCSGAHVLEFLRYLDQFGKTKVHGPACPFFGHPNPPAPCPCPLRQAWGSLDALVG
RLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQLQGDSSGG
LHGHAHQPPPPPPPPAGAAC

Transcript Sequence

Transcript ID

Zm00001d003057_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:30670978:30671580:1 gene:Zm00001d003057 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Sequence

ATGGACATGTCGCCGAACCCCGACAGCCCCTCGTCAGGAGGGGGCAACGGCATCGGGCCG
AGCAGCGGAGGCGCATCGCCGTCGGTTGGTTCCATGACGCCGCAGTCGCCGAGCCGGTAC
GAGGCGCAGAAGCGGCGCGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCG
CCGCTGAGCCTGGCGCAGTGCAGCGGGGCTCACGTCCTGGAGTTCCTCCGCTACCTGGAC
CAGTTCGGCAAGACCAAGGTGCACGGCCCGGCGTGCCCCTTCTTCGGCCATCCGAACCCG
CCGGCGCCGTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCAGCCTGGACGCCCTGGTGGGC
CGCCTCCGCGCCGCCTTCGAGGAGAACGGGGGCCGCCCGGAGTCCAACCCCTTCGCGGCG
CGCGCCGTGCGCCTCTACCTCCGCGAGGTCCGCGAGCACCAGGCCCGCGCCCGCGGCGTC
AGCTACGAGAAGAAGAAGCGCAAGAAGCCGCAGCAGCTGCAGGGCGACAGCAGCGGCGGC
CTTCACGGCCACGCGCACCAGCCGCCGCCGCCGCCCCCGCCGCCCGCCGGCGCCGCCTGC
TGA