Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002936_T042
CDS Infomation

cds chromosome:B73_RefGen_v4:2:27307063:27322283:1 gene:Zm00001d002936 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transportin-1
Sequence

ATGCCTCCTGAAGGTTTACGGGAGTTCTTGCCACGCTTAATCCCGACTTTGTTGTCGAAC
ATGGTATATGCTGATGATGATGAGTCCCTTGATGATGCTGAGGAAGATGAATCCTTTCCG
GACAGGGACCAGGATTTGAAGCCCCGCTTTCATGCCTCTCGATTGCATGGATCACAAACT
GGAGATGATGATGATGATGATGATGCTGTAAATGTCTGGAACCTGCGGAAGTGTAGTGCT
GCTGGGTTGGATGTTCTCTCTAATGTGTTTGGTGACAGCATCCTTCCAACTTTAATGCCA
TTGATTGAGCAAAACTTGGCTCGAACAGATGACAATTCTTGGAAGGAGAGGGAAACTGCT
GTTTTGTGTCTAGGCGCTATAGCAGAGGGGTGCATTGGTGGTCTATACCCACACCTTCCT
CAGATTGTTGCCTTCCTAATCCCACTTCTTGATGATAAATTTCCTCTTATACGGAGTATT
ACGTGTTGGACGCTCTCTCGATATAGCAAATTCATTGTTCAGAGCCTTGATCATCCAAAT
GGACGTGAACAATTTGATAAGATTCTCATGGGATTGCTAAGAAGGATATTGGATACTAAC
AAAAGAGTGCAAGAGGCTGCTTGTTCAGCGTTTGCAACTCTTGAAGAGGAAGCTTCTGAA
GAATTAGTACCCCACTTGGAAGTAATTTTGCAGCACCTCATGTGTGCCTATGGAAAATAC
CAGAGACGAAATCTTCGGATACTCTATGATGCCCTTGGTACCCTGGCTGATGCTGTTGGA
GCAGAATTAAATCAGGCAAAATATCTAGATATATTTATGCCGCCTTTGATCACGAAGTGG
CAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACATCTATT
GCACAGGCATTGGGACCAGGATTTGCTCAGTTTGCGGAACCAGTGTTTCAAAGGTGCATC
AATCTTATCCAATCGCAACAGTTGGCAAAGATTGATCCTACTGCAGCTGGTGCGGTGTAT
GATAGAGAATTCATTGTTTGTTCGTTGGACCTACTGTCTGGACTTGCAGAAGGTCTTGGC
GCTGGTATTGAAAGTCTTGTTGCACAGAGCAGTTTGAGAGATCTGCTTTTGCAATGCTGC
ATGGATGAAGCAGCTGATGTTCGACAAAGTGCCCTTGCCCTTCTTGGAGACCTTTCTAGG
GTTTGCCCAATACATTTGCATCCACGTCTTCAAGAATTTCTTACTGTTGCAGCAAAGCAA
CTGAACCCTCAGTCTGTGAAGGATGCGGTATCAGTAGCTAACAATGCCTGTTGGGCTATT
GGAGAATTAGCAATCAAGATTGGCAAAGAAATAGCACCTGTGGTGATCACCGTTGTTTCG
TGCTTGATTACCATCCTAAAATCCCCAGAGGGTTTGAACAAGTCACTTGTTGAAAATAGT
GCGATCACTCTTGGGAGGCTTAGCTGGGTCTGTCCAGACATCGTGGCCCCTCATATGGAG
CATTTCATGCAAGCATGGTGCAGTGCCTTGTGCACGATCAGAGATGATTTTGAGAAAGAG
GACGCGTTTCATGGACTGTGTGCAATGGTGGCAGCAAACCCTACAGGAGCCGCTGGTTCA
TTAGCTTACATCTGCCAGGCCTGTGCAAGTTGGACTGAGATAAAAAGCGAAGGTCTTCAC
AATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGCTGCTTGGAAACAACGGTGGGTGG
GAACAATGCATGGCCGCCCTGAAACCAGACGTTGTGCAGAAATTAGCTAGATACGGAGTA
TGA

Peptide Sequence

PEP ID

Zm00001d002936_P042
PEP Infomation

pep chromosome:B73_RefGen_v4:2:27307063:27322283:1 gene:Zm00001d002936 transcript:Zm00001d002936_T042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transportin-1
Sequence

MPPEGLREFLPRLIPTLLSNMVYADDDESLDDAEEDESFPDRDQDLKPRFHASRLHGSQT
GDDDDDDDAVNVWNLRKCSAAGLDVLSNVFGDSILPTLMPLIEQNLARTDDNSWKERETA
VLCLGAIAEGCIGGLYPHLPQIVAFLIPLLDDKFPLIRSITCWTLSRYSKFIVQSLDHPN
GREQFDKILMGLLRRILDTNKRVQEAACSAFATLEEEASEELVPHLEVILQHLMCAYGKY
QRRNLRILYDALGTLADAVGAELNQAKYLDIFMPPLITKWQQLSNSDKDLFPLLECFTSI
AQALGPGFAQFAEPVFQRCINLIQSQQLAKIDPTAAGAVYDREFIVCSLDLLSGLAEGLG
AGIESLVAQSSLRDLLLQCCMDEAADVRQSALALLGDLSRVCPIHLHPRLQEFLTVAAKQ
LNPQSVKDAVSVANNACWAIGELAIKIGKEIAPVVITVVSCLITILKSPEGLNKSLVENS
AITLGRLSWVCPDIVAPHMEHFMQAWCSALCTIRDDFEKEDAFHGLCAMVAANPTGAAGS
LAYICQACASWTEIKSEGLHNEVCQILNGYKQLLGNNGGWEQCMAALKPDVVQKLARYGV

Transcript Sequence

Transcript ID

Zm00001d002936_T042
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:27307063:27322283:1 gene:Zm00001d002936 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transportin-1
Sequence

TGCAGTCACATCTTAAAAATGTTACTGAATTGATTCTGCAAGCTAATAAAGATCCAGATG
ATGAAGTCGCTCTGGAAGCTTGCGAGTTCTGGTCTGCATACTGTGATGTGAGCATGCCTC
CTGAAGGTTTACGGGAGTTCTTGCCACGCTTAATCCCGACTTTGTTGTCGAACATGGTAT
ATGCTGATGATGATGAGTCCCTTGATGATGCTGAGGAAGATGAATCCTTTCCGGACAGGG
ACCAGGATTTGAAGCCCCGCTTTCATGCCTCTCGATTGCATGGATCACAAACTGGAGATG
ATGATGATGATGATGATGCTGTAAATGTCTGGAACCTGCGGAAGTGTAGTGCTGCTGGGT
TGGATGTTCTCTCTAATGTGTTTGGTGACAGCATCCTTCCAACTTTAATGCCATTGATTG
AGCAAAACTTGGCTCGAACAGATGACAATTCTTGGAAGGAGAGGGAAACTGCTGTTTTGT
GTCTAGGCGCTATAGCAGAGGGGTGCATTGGTGGTCTATACCCACACCTTCCTCAGATTG
TTGCCTTCCTAATCCCACTTCTTGATGATAAATTTCCTCTTATACGGAGTATTACGTGTT
GGACGCTCTCTCGATATAGCAAATTCATTGTTCAGAGCCTTGATCATCCAAATGGACGTG
AACAATTTGATAAGATTCTCATGGGATTGCTAAGAAGGATATTGGATACTAACAAAAGAG
TGCAAGAGGCTGCTTGTTCAGCGTTTGCAACTCTTGAAGAGGAAGCTTCTGAAGAATTAG
TACCCCACTTGGAAGTAATTTTGCAGCACCTCATGTGTGCCTATGGAAAATACCAGAGAC
GAAATCTTCGGATACTCTATGATGCCCTTGGTACCCTGGCTGATGCTGTTGGAGCAGAAT
TAAATCAGGCAAAATATCTAGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAAC
TTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACATCTATTGCACAGG
CATTGGGACCAGGATTTGCTCAGTTTGCGGAACCAGTGTTTCAAAGGTGCATCAATCTTA
TCCAATCGCAACAGTTGGCAAAGATTGATCCTACTGCAGCTGGTGCGGTGTATGATAGAG
AATTCATTGTTTGTTCGTTGGACCTACTGTCTGGACTTGCAGAAGGTCTTGGCGCTGGTA
TTGAAAGTCTTGTTGCACAGAGCAGTTTGAGAGATCTGCTTTTGCAATGCTGCATGGATG
AAGCAGCTGATGTTCGACAAAGTGCCCTTGCCCTTCTTGGAGACCTTTCTAGGGTTTGCC
CAATACATTTGCATCCACGTCTTCAAGAATTTCTTACTGTTGCAGCAAAGCAACTGAACC
CTCAGTCTGTGAAGGATGCGGTATCAGTAGCTAACAATGCCTGTTGGGCTATTGGAGAAT
TAGCAATCAAGATTGGCAAAGAAATAGCACCTGTGGTGATCACCGTTGTTTCGTGCTTGA
TTACCATCCTAAAATCCCCAGAGGGTTTGAACAAGTCACTTGTTGAAAATAGTGCGATCA
CTCTTGGGAGGCTTAGCTGGGTCTGTCCAGACATCGTGGCCCCTCATATGGAGCATTTCA
TGCAAGCATGGTGCAGTGCCTTGTGCACGATCAGAGATGATTTTGAGAAAGAGGACGCGT
TTCATGGACTGTGTGCAATGGTGGCAGCAAACCCTACAGGAGCCGCTGGTTCATTAGCTT
ACATCTGCCAGGCCTGTGCAAGTTGGACTGAGATAAAAAGCGAAGGTCTTCACAATGAGG
TGTGCCAGATTCTGAATGGCTACAAGCAGCTGCTTGGAAACAACGGTGGGTGGGAACAAT
GCATGGCCGCCCTGAAACCAGACGTTGTGCAGAAATTAGCTAGATACGGAGTATGATGAG
AAGCAAGCTCGTGTGGTTTATTCACCTCATACACCGACCATCATCTTTATGGCGGAGACA
AGAGAGGAGCAGAAAGGGGTGGGGGTCGTCGAGAGTGTCTCTGCTGCTGATGCATCATCT
TTACATGTGTGGCACTTGAGAGTCGATTCGGTTCGTTGGTACGCCATTGTCCGTTCGTTC
ATTGTTATACTGGTTGGTGCACAGCATTTCCAGAGCGAGAGTAGGATGTCTTGGTAAACC
CCCCATGTGTATTGGTTGGTTGGGCCAGTGGACTTGGTTTTGGTTTTTTTGTCATTCCTA
CTGGCAAACACAACAAGGCCACCACCCTCTTGCTCGCCCCACCCCGGCAACATTGAGAAA
ACAGAAAGGTTTTGTAGCGTGTAATTCTCTCTCTTTTCTTGGTTTCTTATTATTATTAGG
TGTAGGATTGTTTTCGAGTCTTGTTTGGCAGGAAGGGTTTGTACGAGAAATCAATTGATT
GCTCACTCACCACAAAATAATAAAAAAGATCGATCGATGGGGCTTGT