Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d002919_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:2:26656581:26661097:1 gene:Zm00001d002919 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGGGCAACATGACCCGCTCAAACTCGCCCGTCTCCCGCCGCATCGTCCTCTCCTTCCTC
GACTTCCTTAACTCCGTCGAATTAGCTCCTGGTGTTGATCCTGAAGCTCTGGAAGTTGCT
AAGGATTGTCTGGAGTCCATTTTTAGTGTTAACTCAACAGCCACTGGTGACGCAATACAA
CCAGGACTGTTGTTTGAGCTATTTGCTTCTCTCGAAGCAAATGAAAGAGACCAGGCAAGA
GCTGCTTTGCTGTCACAATCTGTTTCAAACAAGCCATCTCAAACTGCGGGTACATCAAAT
GTCGAAGAAGACTCAAACAAATGCACAACATCAAATAGCGACAGCCAGGTGGAGGATACA
TTTGAACTAGATCATTCAGGAGATGAACTATTTGCAAAATTTTATGCTGCACTTGATGAA
ATCAATTTCTTTAAGACATCACCTGCTGGAGCTGAAGATCCTGGTCTACTTTCAAAAGCA
ACACAATACTTTGATGATGCATTACTGGCGATGCAGAAGTTGGGAAAGAAAAGGGCAAGC
TTAGTAGACATTGCAGAGTCCTTTAAATCAAGAGGGAATGAATTCATGAGATCAAACCAA
CACCTTAAAGCGGTAGAGCTGTACACCTGTGCCATTGCATTGAACCAACAAAATGCCATT
TACTATTGCAACAGGGCTGCTGCATATACCCTTCTTAATATGAACAACAAAGCTATTGAG
GACTGCCTGAAGTCAATTGAAATTGACCCTCACTACAGCAAAGCATATAGCCGACTCGGA
TCTGCTTATTTTGCTATGGGGAATTATCACGATGCTCTGTACAAGGGATACTTGAAAGCC
GCCGAGCTTGATCCCAGTAATGAAAATGTCAGGCAGAATATTGAGGTCACAAAAAAGAAA
CTGGCTGAACAACGAGTCCCACCAGAAGAGCAGAACACACATGCAGGCCAAGCTCAAGGA
CCACATCCAATATTTACAAGTGGTGGTGTTCCTTTCAATCTGTTTCCACCAGGTAGTTCT
CCAGTTCAAGAATTCTTCGCTGGCTGGTCGTCCGATGTTGGTGCACCACCACCAGGACAT
TCGATAAGTATAAATTTGAATGATATTTTTGGCCAAGCAAATGTCAATGCTAGCGGTCAA
GGATCAAGTCAAACAGGGAATTCAAATAACCATACTCCATCTGCTTCTTTCTCAACTGGT
GCTGCTGTTCCTCCTCCCTTTGCCTTCTCGGGCTCAGGAAATGAAGGAACGCAGGCACGC
CAAGCTTCTAATGGACTTGAAGGGGAACATGGTGAACCAGGCATACACAGGGATGATGAC
GTCCATATAAATTTGGCTGGACCCGAGCAGGCTGCGGAGGCTTTGAGAGCTGTGATGCAG
ATGCTTGGGCCACAGATGGGTCAACATGAGGGTGCACCTAGAGGTTTGATACTAATCTGA

Peptide Sequence

PEP ID

Zm00001d002919_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:2:26656581:26661097:1 gene:Zm00001d002919 transcript:Zm00001d002919_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MGNMTRSNSPVSRRIVLSFLDFLNSVELAPGVDPEALEVAKDCLESIFSVNSTATGDAIQ
PGLLFELFASLEANERDQARAALLSQSVSNKPSQTAGTSNVEEDSNKCTTSNSDSQVEDT
FELDHSGDELFAKFYAALDEINFFKTSPAGAEDPGLLSKATQYFDDALLAMQKLGKKRAS
LVDIAESFKSRGNEFMRSNQHLKAVELYTCAIALNQQNAIYYCNRAAAYTLLNMNNKAIE
DCLKSIEIDPHYSKAYSRLGSAYFAMGNYHDALYKGYLKAAELDPSNENVRQNIEVTKKK
LAEQRVPPEEQNTHAGQAQGPHPIFTSGGVPFNLFPPGSSPVQEFFAGWSSDVGAPPPGH
SISINLNDIFGQANVNASGQGSSQTGNSNNHTPSASFSTGAAVPPPFAFSGSGNEGTQAR
QASNGLEGEHGEPGIHRDDDVHINLAGPEQAAEALRAVMQMLGPQMGQHEGAPRGLILI

Transcript Sequence

Transcript ID

Zm00001d002919_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:2:26656581:26661097:1 gene:Zm00001d002919 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

AGGCGGTGGAGTATGCCACCAACTTCAACTGGAAACTCGTAAGAGGAAAAAAAAACACAC
CCGCCCCGCCGTCCACCTCTCCGCCTCCTCCGGTGCCGGCGCTGGAGCGGCCGACCCACG
CAATCTATGGGCAACATGACCCGCTCAAACTCGCCCGTCTCCCGCCGCATCGTCCTCTCC
TTCCTCGACTTCCTTAACTCCGTCGAATTAGCTCCTGGTGTTGATCCTGAAGCTCTGGAA
GTTGCTAAGGATTGTCTGGAGTCCATTTTTAGTGTTAACTCAACAGCCACTGGTGACGCA
ATACAACCAGGACTGTTGTTTGAGCTATTTGCTTCTCTCGAAGCAAATGAAAGAGACCAG
GCAAGAGCTGCTTTGCTGTCACAATCTGTTTCAAACAAGCCATCTCAAACTGCGGGTACA
TCAAATGTCGAAGAAGACTCAAACAAATGCACAACATCAAATAGCGACAGCCAGGTGGAG
GATACATTTGAACTAGATCATTCAGGAGATGAACTATTTGCAAAATTTTATGCTGCACTT
GATGAAATCAATTTCTTTAAGACATCACCTGCTGGAGCTGAAGATCCTGGTCTACTTTCA
AAAGCAACACAATACTTTGATGATGCATTACTGGCGATGCAGAAGTTGGGAAAGAAAAGG
GCAAGCTTAGTAGACATTGCAGAGTCCTTTAAATCAAGAGGGAATGAATTCATGAGATCA
AACCAACACCTTAAAGCGGTAGAGCTGTACACCTGTGCCATTGCATTGAACCAACAAAAT
GCCATTTACTATTGCAACAGGGCTGCTGCATATACCCTTCTTAATATGAACAACAAAGCT
ATTGAGGACTGCCTGAAGTCAATTGAAATTGACCCTCACTACAGCAAAGCATATAGCCGA
CTCGGATCTGCTTATTTTGCTATGGGGAATTATCACGATGCTCTGTACAAGGGATACTTG
AAAGCCGCCGAGCTTGATCCCAGTAATGAAAATGTCAGGCAGAATATTGAGGTCACAAAA
AAGAAACTGGCTGAACAACGAGTCCCACCAGAAGAGCAGAACACACATGCAGGCCAAGCT
CAAGGACCACATCCAATATTTACAAGTGGTGGTGTTCCTTTCAATCTGTTTCCACCAGGT
AGTTCTCCAGTTCAAGAATTCTTCGCTGGCTGGTCGTCCGATGTTGGTGCACCACCACCA
GGACATTCGATAAGTATAAATTTGAATGATATTTTTGGCCAAGCAAATGTCAATGCTAGC
GGTCAAGGATCAAGTCAAACAGGGAATTCAAATAACCATACTCCATCTGCTTCTTTCTCA
ACTGGTGCTGCTGTTCCTCCTCCCTTTGCCTTCTCGGGCTCAGGAAATGAAGGAACGCAG
GCACGCCAAGCTTCTAATGGACTTGAAGGGGAACATGGTGAACCAGGCATACACAGGGAT
GATGACGTCCATATAAATTTGGCTGGACCCGAGCAGGCTGCGGAGGCTTTGAGAGCTGTG
ATGCAGATGCTTGGGCCACAGATGGGTCAACATGAGGGTGCACCTAGAGGTTTGATACTA
ATCTGA